BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192736.2.4
(838 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB660236.1|CB660236 OSJNEd01M22.f OSJNEd Oryza sativa (j... 539 e-151
gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L... 539 e-151
ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S... 539 e-151
gb|AU165744.1|AU165744 AU165744 Rice panicle at flowering s... 519 e-145
gb|D22660.2|D22660 RICC0773A Rice callus Oryza sativa (japo... 513 e-143
gb|CV723695.1|CV723695 root--04-H09.g1 Rice root lambda pha... 509 e-142
gb|CO436075.1|CO436075 OsMR997 5MT resistant rice mutant cD... 486 e-134
gb|AU162248.1|AU162248 AU162248 Rice panicle shorter than 3... 484 e-134
gb|CF326195.1|CF326195 JMT1--05-F24.g1 AtJMT-overexpressing... 484 e-134
gb|CV722210.1|CV722210 YBH--06-N13.b1 Rice before heading y... 480 e-133
gb|AU068867.1|AU068867 AU068867 Rice callus Oryza sativa (j... 474 e-131
gb|CV728548.1|CV728548 COLD--01-N20.b1 Cold treated rice le... 470 e-130
gb|AU068866.1|AU068866 AU068866 Rice callus Oryza sativa (j... 468 e-129
gb|AU165743.1|AU165743 AU165743 Rice panicle at flowering s... 468 e-129
gb|CB660235.1|CB660235 OSJNEd01M21.r OSJNEd Oryza sativa (j... 452 e-124
dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA... 373 e-100
gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbar... 373 e-100
gb|AC137930.3| Oryza sativa (japonica cultivar-group) chrom... 373 e-100
gb|AACV01005846.1| Oryza sativa (japonica cultivar-group) c... 373 e-100
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 373 e-100
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 373 e-100
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 373 e-100
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 373 e-100
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 373 e-100
gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06... 349 2e-093
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 349 2e-093
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 349 2e-093
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 349 2e-093
gb|D15340.1|D15340 RICC0480A Rice callus Oryza sativa (japo... 347 6e-093
gb|AACV01021751.1| Oryza sativa (japonica cultivar-group) c... 345 2e-092
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 345 2e-092
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 345 2e-092
gb|D22841.1|D22841 RICC1572A Rice callus Oryza sativa (japo... 343 9e-092
gb|C73999.1|C73999 C73999 Rice panicle shorter than 3cm Ory... 327 6e-087
gb|AU166202.1|AU166202 AU166202 Rice immature leaf includin... 313 8e-083
gb|AU064030.1|AU064030 AU064030 Rice panicle at flowering s... 283 7e-074
gb|AU093356.1|AU093356 AU093356 Rice callus Oryza sativa (j... 276 2e-071
gb|D39148.1|D39148 RICR2556A Rice root Oryza sativa (japoni... 272 3e-070
gb|AZ130887.1|AZ130887 OSJNBb0070E08r CUGI Rice BAC Library... 266 2e-068
gb|AACV01033842.1| Oryza sativa (japonica cultivar-group) C... 266 2e-068
gb|AU029874.1|AU029874 AU029874 Rice cDNA from immature lea... 254 7e-065
gb|AU095004.1|AU095004 AU095004 Rice immature leaf includin... 252 3e-064
gb|C29036.1|C29036 C29036 Rice callus cDNA Oryza sativa (ja... 238 4e-060
gb|D15553.1|D15553 RICC0814A Rice callus Oryza sativa (japo... 224 6e-056
gb|C26950.2|C26950 C26950 Rice callus cDNA Oryza sativa (ja... 182 2e-043
gb|AU108724.1|AU108724 AU108724 Rice callus Oryza sativa (j... 176 1e-041
gb|D15320.1|D15320 RICC0448A Rice callus Oryza sativa (japo... 172 2e-040
gb|AU063167.2|AU063167 AU063167 Rice callus Oryza sativa (j... 125 4e-026
gb|AU095471.1|AU095471 AU095471 Rice root Oryza sativa (jap... 115 4e-023
gb|AU030211.1|AU030211 AU030211 Rice cDNA from immature lea... 100 2e-018
gb|AU062795.1|AU062795 AU062795 Rice callus Oryza sativa (j... 80 2e-012
gb|D22840.1|D22840 RICC1572B Rice callus Oryza sativa (japo... 54 1e-004
gb|D22803.1|D22803 RICC1355A Rice callus Oryza sativa (japo... 50 0.002
gb|AQ867235.1|AQ867235 nbeb0031I13f CUGI Rice BAC Library (... 42 0.48
gb|AQ871229.1|AQ871229 nbeb0042N09r CUGI Rice BAC Library (... 42 0.48
gb|AQ916723.1|AQ916723 nbeb0067G09f CUGI Rice BAC Library (... 42 0.48
gb|AZ127216.1|AZ127216 OSJNBb0083E18f CUGI Rice BAC Library... 42 0.48
gb|AZ132696.1|AZ132696 OSJNBb0107L04f CUGI Rice BAC Library... 42 0.48
dbj|AP005253.1| Oryza sativa (japonica cultivar-group) chro... 42 0.48
dbj|AP003850.2| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AK101022.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.48
dbj|AP005259.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005410.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC O... 42 0.48
emb|AL731749.3|CNS08C7Y Oryza sativa chromosome 12, . BAC O... 42 0.48
dbj|AP004746.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005499.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005517.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005489.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AC105734.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbar... 42 0.48
emb|AL732645.4|CNS08C9K Oryza sativa chromosome 12, . BAC O... 42 0.48
gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 ... 42 0.48
dbj|AP003808.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005257.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP006159.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005444.4| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005103.5| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP005745.2| Oryza sativa (japonica cultivar-group) geno... 42 0.48
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 42 0.48
dbj|AP006070.2| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AC109832.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
dbj|AP003921.3| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AC135431.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
dbj|AP004320.2| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP003344.2| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AACV01002439.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
gb|AACV01004350.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
gb|AACV01008827.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
gb|AACV01012008.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
gb|AACV01017079.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
gb|AACV01032307.1| Oryza sativa (japonica cultivar-group) C... 42 0.48
gb|AACV01032626.1| Oryza sativa (japonica cultivar-group) C... 42 0.48
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.48
ref|NM_191459.1| Oryza sativa (japonica cultivar-group), p... 42 0.48
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107202.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.48
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.48
dbj|AP003265.4| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|CH401227.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromoso... 42 0.48
emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromoso... 42 0.48
emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromoso... 42 0.48
emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromoso... 42 0.48
emb|CR933498.1|OSJN00303 Oryza sativa genomic DNA, chromoso... 42 0.48
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.48
gb|AC112208.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|AC135503.8| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|AC146948.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.48
>gb|CB660236.1|CB660236 OSJNEd01M22.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01M22 5', mRNA sequence
Length = 782
Score = 539 bits (272), Expect = e-151
Identities = 440/496 (88%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 72 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 131
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 132 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 191
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 192 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 251
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 311
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 312 tgggaaccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 371
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 372 gtgcactgaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaa 431
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||| ||||||||||| ||| || || || ||||||||
Sbjct: 432 ggctcgtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcat 491
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| ||||| ||||| ||||| || || || || ||||||||||| |||||
Sbjct: 492 ggttgagggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatct 551
Query: 543 caagggcggttactag 558
|||||| |||||||||
Sbjct: 552 caagggtggttactag 567
>gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds
Length = 753
Score = 539 bits (272), Expect = e-151
Identities = 440/496 (88%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 16 gatgccggcggaccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 75
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 76 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 135
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 136 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 195
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 196 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 255
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 256 tgggaaccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 315
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 316 gtgcactgaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaa 375
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||| ||||||||||| ||| || || |||||||||||
Sbjct: 376 ggctcgtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcctggcttcat 435
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| ||||| ||||| ||||| || || || || ||||||||||| |||||
Sbjct: 436 ggttgagggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatct 495
Query: 543 caagggcggttactag 558
|||||| |||||||||
Sbjct: 496 caagggtggttactag 511
>ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribosomal protein L21
(OSJNBa0006L06.3), mRNA
Length = 783
Score = 539 bits (272), Expect = e-151
Identities = 440/496 (88%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 77 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 136
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 137 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 196
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 197 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 256
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 316
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 317 tgggaaccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 376
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 377 gtgcactgaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaa 436
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||| ||||||||||| ||| || || || ||||||||
Sbjct: 437 ggctcgtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcat 496
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| ||||| ||||| ||||| || || || || ||||||||||| |||||
Sbjct: 497 ggttgagggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatct 556
Query: 543 caagggcggttactag 558
|||||| |||||||||
Sbjct: 557 caagggtggttactag 572
>gb|AU165744.1|AU165744 AU165744 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4280, mRNA sequence
Length = 634
Score = 519 bits (262), Expect = e-145
Identities = 419/468 (89%), Gaps = 8/468 (1%)
Strand = Plus / Plus
Query: 97 cgcgacctgttcgcgcggccc-ttccgcaagaaggggtacatcccgctcaccacgtacct 155
|||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 4 cgcgacctcttcgcgcggcccgttccgcaagaagggttacatcccgctcaccacntacct 63
Query: 156 gcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaaggg 215
| | || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 64 gaggacgtncaagatcggcgattacgtcgacgtcaaggtgaacggcgccgtgcacaaggg 123
Query: 216 catgccgcacaagttctaccac-ggccgcaccgggagcgtctggaacgtcaccaagcgcg 274
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 124 catgccgcacaagttctaccacgggccgcaccggccgcgtctggaacgtcaccaagcgcg 183
Query: 275 ccattggcgtcgagatcaacaagcaggt---taacggtcgcatcatcaggaagcggatcc 331
|||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 184 ccatcggcgtcgagatcaacaagcaggtcggtaac---cgcatcatcaggaagaggatcc 240
Query: 332 atgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaag 391
||||||| ||||||||||| ||||| ||| | ||||| |||||| ||||||||||||||
Sbjct: 241 atgtccgtgtggagcatgtccagccatccaggtgcaccgaggagctccgcctgaggaaaa 300
Query: 392 ccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaaga 451
|||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 301 tcaagaacgatcagctcaaggctgatgccaaggcccgtggtgaggttatcagcaccaaga 360
Query: 452 ggcagcctgtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtca 511
| ||||| | ||||||||||||||| |||||||| ||||||||||| || ||||| || |
Sbjct: 361 gacagcccgagggacccaaacctggtttcatggttgagggtgctacgctggagactgtta 420
Query: 512 ctcctattccttatgatgtggtcaacgatctcaagggcggttactaga 559
| || ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 421 cccccattccgtatgatgtggtcaatgatctcaagggtggttactaga 468
>gb|D22660.2|D22660 RICC0773A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0773, mRNA sequence
Length = 729
Score = 513 bits (259), Expect = e-143
Identities = 436/496 (87%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| |||||| |||| ||||||| |||||| |||||||||| || ||| |
Sbjct: 35 gatgccggcgggccacgggntgcgtgcgcggacgcgcgacttgttcgcgcgnccgttcag 94
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||
Sbjct: 95 gaagaaggggtacatcccgctcaccacctacntccgcacctacaagatcggcgagcacgt 154
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 155 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 214
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 215 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 274
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 275 tgggaaccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 334
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 335 gtgcactgaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaa 394
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||| ||||||||||| ||| || || || ||||||||
Sbjct: 395 ggctcgtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcat 454
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| ||||| ||||| ||||| || || || || ||||||||||| |||||
Sbjct: 455 ggttgagggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatct 514
Query: 543 caagggcggttactag 558
|||||| |||||||||
Sbjct: 515 caagggtggttactag 530
>gb|CV723695.1|CV723695 root--04-H09.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-H09, mRNA sequence
Length = 478
Score = 509 bits (257), Expect = e-142
Identities = 378/417 (90%), Gaps = 6/417 (1%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 65 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 124
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
|||||| |||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 125 tccgcatgaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 184
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 244
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 245 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 304
Query: 299 aggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct: 305 aggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagc 361
Query: 356 cctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcgg 415
| ||| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| |
Sbjct: 362 catccaggtgcaccgaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctg 421
Query: 416 atgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaac 472
||||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 422 atgccaaggcccgtggtgaggttatcagcaccaagagacagcccgagggacccaaac 478
>gb|CO436075.1|CO436075 OsMR997 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 866
Score = 486 bits (245), Expect = e-134
Identities = 381/425 (89%), Gaps = 6/425 (1%)
Strand = Plus / Plus
Query: 138 cccgctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaa 197
|||||||||||| |||||| | || |||||||||||||| ||||||||||||||||| ||
Sbjct: 64 cccgctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaa 123
Query: 198 cggcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccgggagcgtctg 257
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 124 cggcgccgtgcacaagggcatgccgcacaagttctaccacggccgcaccggccgcgtctg 183
Query: 258 gaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggttaacggt---cgcat 314
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 184 gaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt---cggtaaccgcat 240
Query: 315 catcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagagga 374
|||||||||| ||||||||||||| ||||||||||| ||||| ||| | ||||| |||||
Sbjct: 241 catcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcaccgagga 300
Query: 375 gttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtga 434
| |||||||||||||| |||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 301 gctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgtggtga 360
Query: 435 ggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgagggtgc 494
||| |||||||||||||| ||||| | ||||||||||||||| |||||||| ||||||||
Sbjct: 361 ggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgagggtgc 420
Query: 495 tacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggcggtta 554
||| || ||||| || || || ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 421 tacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggtggtta 480
Query: 555 ctaga 559
|||||
Sbjct: 481 ctaga 485
>gb|AU162248.1|AU162248 AU162248 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30121, mRNA sequence
Length = 656
Score = 484 bits (244), Expect = e-134
Identities = 408/458 (89%), Gaps = 9/458 (1%)
Strand = Plus / Plus
Query: 106 ttcgcgcggcccttccgcaagaaggggtacatcccgctcaccacgtacc-tgcgcaccta 164
||||||||||| |||||||||||||| |||||||||||||| || |||| || | || ||
Sbjct: 15 ttcgcgcggccgttccgcaagaagggttacatcccgctcacnacctaccctgaggacgta 74
Query: 165 caagatcggcgactacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgca 224
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 75 caagatcggcgattacgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgca 134
Query: 225 caagttctaccacggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgt 284
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 135 caagttctaccacggccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgt 194
Query: 285 cgagatcaacaagcaggt---taacggtcgcatcatcaggaagcggatccatgtccgcgt 341
|||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 195 cgagatcaacaagcaggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgt 251
Query: 342 ggagcatgtgcagccctcccgttgcacagaggagttccgcctgaggaaagccaagaatga 401
||||||||| ||||| ||| | ||||| |||||| |||||||||||||| |||||| ||
Sbjct: 252 ggagcatgtccagccatccaggtgcaccgaggag-tccgcctgaggaaaatcaagaacga 310
Query: 402 ccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgt 461
||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 311 tcagctcaaggctgatgccaaggcccgtggtgaggttatcagcaccaagagacagcccga 370
Query: 462 gggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattcc 521
||||||||||||||| |||||||| |||||| ||| || ||||| || || || |||||
Sbjct: 371 gggacccaaacctggtttcatggttgagggt-ntacgctggagactgttacccccattcc 429
Query: 522 ttatgatgtggtcaacgatctcaagggcggttactaga 559
|||||||||||||| ||||||||||| ||||||||||
Sbjct: 430 gtatgatgtggtcaatgatctcaagggtggttactaga 467
>gb|CF326195.1|CF326195 JMT1--05-F24.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-F24, mRNA sequence
Length = 583
Score = 484 bits (244), Expect = e-134
Identities = 393/440 (89%), Gaps = 7/440 (1%)
Strand = Plus / Minus
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
||||||||| ||||||||||||||||| |||||| | || ||||||||||| || |||||
Sbjct: 583 caagaagggttacatcccgctcaccacctacctgaggacgtacaagatcgg-gattacgt 525
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 465
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 464 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 405
Query: 303 ---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctc 359
|||| ||||||||||||||| ||||||||||||| ||||||||||| ||||| ||
Sbjct: 404 cggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatc 348
Query: 360 ccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgc 419
| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| |||||
Sbjct: 347 caggtgcaccgaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgc 288
Query: 420 caaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggctt 479
||||||||| |||||||| |||||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 287 caaggcccgtggtgaggttatcagcaccaagagacagcccgagggacccaaacctggttt 228
Query: 480 catggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacga 539
|||||| ||||||||||| || ||||| || || || ||||| |||||||||||||| ||
Sbjct: 227 catggttgagggtgctacgctggagactgttacccccattccgtatgatgtggtcaatga 168
Query: 540 tctcaagggcggttactaga 559
||||||||| ||||| ||||
Sbjct: 167 tctcaagggtggttaataga 148
>gb|CV722210.1|CV722210 YBH--06-N13.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-N13, mRNA sequence
Length = 455
Score = 480 bits (242), Expect = e-133
Identities = 348/382 (91%), Gaps = 6/382 (1%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 75 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 134
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 135 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 194
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 254
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 255 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 314
Query: 299 aggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct: 315 aggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagc 371
Query: 356 cctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcgg 415
| ||| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| |
Sbjct: 372 catccaggtgcaccgaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctg 431
Query: 416 atgccaaggcccgcggtgaggt 437
||||||||||||| ||||||||
Sbjct: 432 atgccaaggcccgtggtgaggt 453
>gb|AU068867.1|AU068867 AU068867 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50765_8Z, mRNA sequence
Length = 602
Score = 474 bits (239), Expect = e-131
Identities = 396/443 (89%), Gaps = 9/443 (2%)
Strand = Plus / Plus
Query: 120 ccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgacta 179
|||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| ||
Sbjct: 1 ccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatta 60
Query: 180 cgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61 cgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctacca-gg 119
Query: 240 ccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagca 299
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 120 ccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagca 179
Query: 300 ggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagcc 356
||| |||| ||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct: 180 ggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagcc 236
Query: 357 ctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcgga 416
||| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| ||
Sbjct: 237 atccaggtgcaccgaggag-tccgcctgaggaaaatcaagaacgatcagctcaaggctga 295
Query: 417 tgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctgg 476
|||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct: 296 tgccaaggcccgtggtgaggttatcagcaccaagagacagcccgagggacccaaacctgg 355
Query: 477 cttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaa 536
|||||||| ||||||| ||| || ||||| || || || ||||| ||||||||||||||
Sbjct: 356 tttcatggttgagggtg-tacgctggagactgttacccccattccgtatgatgtggtcaa 414
Query: 537 cgatctcaagggcggttactaga 559
||||||||||| ||||||||||
Sbjct: 415 tgatctcaagggtggttactaga 437
>gb|CV728548.1|CV728548 COLD--01-N20.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-N20, mRNA sequence
Length = 428
Score = 470 bits (237), Expect = e-130
Identities = 356/396 (89%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 14 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 73
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||
Sbjct: 74 gaagaaggggtacatcccgctcaccacctacctccgcacctacnagatcggcgagcacgt 133
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 134 ctacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 193
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 194 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 253
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 254 tgggaaccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 313
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct: 314 gtgcactgaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaa 373
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcc 458
||| || |||||||| |||||||| |||||||||||
Sbjct: 374 ggctcgtggtgaggtcatcagcacgaagaggcagcc 409
>gb|AU068866.1|AU068866 AU068866 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50765_7A, mRNA sequence
Length = 418
Score = 468 bits (236), Expect = e-129
Identities = 375/420 (89%), Gaps = 6/420 (1%)
Strand = Plus / Plus
Query: 120 ccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgacta 179
|||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| ||
Sbjct: 1 ccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatta 60
Query: 180 cgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacgg 120
Query: 240 ccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagca 299
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 121 ccgcaccggccgcgtctggaacgtcaccaagcgcgccatcgggttcgagatcaacaagca 180
Query: 300 ggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagcc 356
||| |||| ||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct: 181 ggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagcc 237
Query: 357 ctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcgga 416
||| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| ||
Sbjct: 238 atccaggtgcaccgaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctga 297
Query: 417 tgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctgg 476
|||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct: 298 tgccaaggcccgtggtgaggttatcagcaccaagagacagcccgagggacccaaacctgg 357
Query: 477 cttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaa 536
|||||||| ||||||||||| || ||||| || || || ||||| ||||||||||||||
Sbjct: 358 tttcatggttgagggtgctacgctggagactgttacccccattccgtatgatgtggtcaa 417
>gb|AU165743.1|AU165743 AU165743 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4280, mRNA sequence
Length = 425
Score = 468 bits (236), Expect = e-129
Identities = 339/372 (91%), Gaps = 6/372 (1%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 57 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 116
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 117 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 176
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 236
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 237 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 296
Query: 299 aggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct: 297 aggtcggtaac---cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagc 353
Query: 356 cctcccgttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcgg 415
| ||| | ||||| |||||| |||||||||||||| |||||| || ||||||||||| |
Sbjct: 354 catccaggtgcaccgaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctg 413
Query: 416 atgccaaggccc 427
||||||||||||
Sbjct: 414 atgccaaggccc 425
>gb|CB660235.1|CB660235 OSJNEd01M21.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01M21 3', mRNA sequence
Length = 716
Score = 452 bits (228), Expect = e-124
Identities = 429/496 (86%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 713 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 654
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||| ||||||| ||||| ||||| ||||||||||| || ||||
Sbjct: 653 gaagaaggggtacatcccgttcaccacttacctccgcacttacaagatcggggagcacgt 594
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 593 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttttaccacggccg 534
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
| |||| |||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 533 ccccggccgcgtttggaacgtcaccaagcgcgccatcggggtggagatcaacaagcaggt 474
Query: 303 taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccg 362
| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| |
Sbjct: 473 tgggacccgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccag 414
Query: 363 ttgcacagaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaa 422
||||| |||||||||| ||||||||| |||||| | |||||||||||| ||||||||
Sbjct: 413 gtgcactgaggagttccccctgaggaagatcaagaacgcccagctcaaggcagatgccaa 354
Query: 423 ggcccgcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcat 482
||| || |||||||| |||||||| ||||||||||| ||| || || || ||||||||
Sbjct: 353 ggctcgtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcat 294
Query: 483 ggtcgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatct 542
||| |||||||| ||||| ||||| ||| | || || || || ||||||||||| |||||
Sbjct: 293 ggttgagggtgcaacactggagactgtcccccccatcccgtacgatgtggtcaatgatct 234
Query: 543 caagggcggttactag 558
|||||| |||||||||
Sbjct: 233 caagggtggttactag 218
>dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I10, full
insert sequence
Length = 2007
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 76 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 135
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 136 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 195
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 255
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 256 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 315
Query: 299 aggt 302
||||
Sbjct: 316 aggt 319
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 1388 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 1447
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 1448 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 1507
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 1508 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 1567
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 1568 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 1627
Query: 550 ggttactaga 559
||||||||||
Sbjct: 1628 ggttactaga 1637
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0081A17, from chromosome 3, complete sequence
Length = 134821
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Minus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 79282 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 79223
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 79222 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 79163
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79162 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 79103
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 79102 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 79043
Query: 299 aggt 302
||||
Sbjct: 79042 aggt 79039
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 77970 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 77911
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 77910 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 77851
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 77850 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 77791
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 77790 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 77731
Query: 550 ggttactaga 559
||||||||||
Sbjct: 77730 ggttactaga 77721
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11,
complete sequence
Length = 156647
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 137068 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 137127
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 137128 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 137187
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137188 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 137247
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 137248 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 137307
Query: 299 aggt 302
||||
Sbjct: 137308 aggt 137311
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 138380 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 138439
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 138440 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 138499
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 138500 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 138559
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 138560 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 138619
Query: 550 ggttactaga 559
||||||||||
Sbjct: 138620 ggttactaga 138629
>gb|AACV01005846.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005846, whole
genome shotgun sequence
Length = 30975
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Minus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 3497 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 3438
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 3437 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 3378
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 3318
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3317 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 3258
Query: 299 aggt 302
||||
Sbjct: 3257 aggt 3254
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 2185 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 2126
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 2125 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 2066
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 2065 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 2006
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 2005 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 1946
Query: 550 ggttactaga 559
||||||||||
Sbjct: 1945 ggttactaga 1936
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 659251 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 659310
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 659311 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 659370
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659371 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 659430
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 659431 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 659490
Query: 299 aggt 302
||||
Sbjct: 659491 aggt 659494
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 660563 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 660622
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 660623 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 660682
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 660683 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 660742
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 660743 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 660802
Query: 550 ggttactaga 559
||||||||||
Sbjct: 660803 ggttactaga 660812
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 cgcccaccgccgtcgccgccc 34
|||||||||||||||||||||
Sbjct: 1182964 cgcccaccgccgtcgccgccc 1182944
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 2251679 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 2251738
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 2251739 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 2251798
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251799 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 2251858
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2251859 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 2251918
Query: 299 aggt 302
||||
Sbjct: 2251919 aggt 2251922
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 2252991 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 2253050
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 2253051 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 2253110
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 2253111 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 2253170
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 2253171 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 2253230
Query: 550 ggttactaga 559
||||||||||
Sbjct: 2253231 ggttactaga 2253240
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 2444041 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 2444100
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 2444101 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 2444160
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2444161 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 2444220
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2444221 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 2444280
Query: 299 aggt 302
||||
Sbjct: 2444281 aggt 2444284
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 2445353 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 2445412
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 2445413 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 2445472
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 2445473 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 2445532
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 2445533 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 2445592
Query: 550 ggttactaga 559
||||||||||
Sbjct: 2445593 ggttactaga 2445602
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 2246786 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 2246845
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 2246846 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 2246905
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246906 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 2246965
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2246966 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 2247025
Query: 299 aggt 302
||||
Sbjct: 2247026 aggt 2247029
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 2248098 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 2248157
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 2248158 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 2248217
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 2248218 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 2248277
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 2248278 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 2248337
Query: 550 ggttactaga 559
||||||||||
Sbjct: 2248338 ggttactaga 2248347
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 cgcccaccgccgtcgccgccc 34
|||||||||||||||||||||
Sbjct: 33648912 cgcccaccgccgtcgccgccc 33648892
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 cgcccaccgccgtcgccgccc 34
|||||||||||||||||||||
Sbjct: 2770499 cgcccaccgccgtcgccgccc 2770479
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 373 bits (188), Expect = e-100
Identities = 230/244 (94%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct: 2246774 ggaagatgccggcggggcacgggctgcgggcgcggacgcgcgacctcttcgcgcggccgt 2246833
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 2246834 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 2246893
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246894 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 2246953
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2246954 gccgcaccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagc 2247013
Query: 299 aggt 302
||||
Sbjct: 2247014 aggt 2247017
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 2248086 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 2248145
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 2248146 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 2248205
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 2248206 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 2248265
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 2248266 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 2248325
Query: 550 ggttactaga 559
||||||||||
Sbjct: 2248326 ggttactaga 2248335
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 cgcccaccgccgtcgccgccc 34
|||||||||||||||||||||
Sbjct: 33558440 cgcccaccgccgtcgccgccc 33558420
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 cgcccaccgccgtcgccgccc 34
|||||||||||||||||||||
Sbjct: 2770389 cgcccaccgccgtcgccgccc 2770369
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
sequence
Length = 162339
Score = 349 bits (176), Expect = 2e-093
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 15312 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 15253
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 15252 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 15193
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15192 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 15133
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15132 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 15073
Score = 224 bits (113), Expect = 6e-056
Identities = 215/249 (86%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 14330 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 14271
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 14270 gaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaaggctcgt 14211
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 14210 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 14151
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 14150 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaagggt 14091
Query: 550 ggttactag 558
|||||||||
Sbjct: 14090 ggttactag 14082
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 349 bits (176), Expect = 2e-093
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 3403226 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 3403167
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 3403166 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 3403107
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3403106 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 3403047
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3403046 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 3402987
Score = 224 bits (113), Expect = 6e-056
Identities = 215/249 (86%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 3402244 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 3402185
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 3402184 gaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaaggctcgt 3402125
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 3402124 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 3402065
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 3402064 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaagggt 3402005
Query: 550 ggttactag 558
|||||||||
Sbjct: 3402004 ggttactag 3401996
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 349 bits (176), Expect = 2e-093
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 16670795 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 16670736
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 16670735 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 16670676
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16670675 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 16670616
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 16670615 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 16670556
Score = 224 bits (113), Expect = 6e-056
Identities = 215/249 (86%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 16669813 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 16669754
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 16669753 gaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaaggctcgt 16669694
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 16669693 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 16669634
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 16669633 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaagggt 16669574
Query: 550 ggttactag 558
|||||||||
Sbjct: 16669573 ggttactag 16669565
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 349 bits (176), Expect = 2e-093
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 16679835 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 16679776
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 16679775 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 16679716
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16679715 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 16679656
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 16679655 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcaggt 16679596
Score = 224 bits (113), Expect = 6e-056
Identities = 215/249 (86%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 16678853 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 16678794
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 16678793 gaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaaggctcgt 16678734
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 16678733 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 16678674
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 16678673 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaagggt 16678614
Query: 550 ggttactag 558
|||||||||
Sbjct: 16678613 ggttactag 16678605
>gb|D15340.1|D15340 RICC0480A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0480A, mRNA sequence
Length = 404
Score = 347 bits (175), Expect = 6e-093
Identities = 271/301 (90%), Gaps = 8/301 (2%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||| |
Sbjct: 56 ggaagatgccggcggggcacgggctgcgggcgcggac--gngacctcttcgcgcggccgt 113
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 114 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 173
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 233
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 234 gccgcaccggcgcggtctggaacgtcaccaagcgcgccatcgggttcgagatcaacaagc 293
Query: 299 aggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| |||||||||| || ||||||||||| ||||
Sbjct: 294 aggtcggtaac---cgcatcatcaggaagaggatccatgttcgtgtggagcatgttcagc 350
Query: 356 c 356
|
Sbjct: 351 c 351
>gb|AACV01021751.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021751, whole
genome shotgun sequence
Length = 14041
Score = 345 bits (174), Expect = 2e-092
Identities = 222/238 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 1236 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 1177
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 1176 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 1117
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1116 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 1057
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcag 300
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1056 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcag 999
Score = 210 bits (106), Expect = 9e-052
Identities = 215/250 (86%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 255 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 196
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 195 gaggagttccgcctgaggaatatcaagaacgaccagctcaaggcagatgccaaggctcgt 136
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 135 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 76
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaa-cgatctcaaggg 548
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 75 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatggatctcaaggg 16
Query: 549 cggttactag 558
|||||||||
Sbjct: 15 tggttactag 6
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 345 bits (174), Expect = 2e-092
Identities = 222/238 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 4585531 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 4585472
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 4585471 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 4585412
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4585411 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 4585352
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcag 300
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4585351 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcag 4585294
Score = 210 bits (106), Expect = 9e-052
Identities = 215/250 (86%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 4584550 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 4584491
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 4584490 gaggagttccgcctgaggaatatcaagaacgaccagctcaaggcagatgccaaggctcgt 4584431
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 4584430 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 4584371
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaa-cgatctcaaggg 548
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 4584370 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatggatctcaaggg 4584311
Query: 549 cggttactag 558
|||||||||
Sbjct: 4584310 tggttactag 4584301
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 345 bits (174), Expect = 2e-092
Identities = 222/238 (93%)
Strand = Plus / Minus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 15451325 gatgccggcgggccacgggctgcgtgcgcggacgcgcgacctgttcgcgcggccgttcag 15451266
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 15451265 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 15451206
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15451205 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 15451146
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcag 300
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15451145 caccggccgcgtctggaacgtcaccaagcgcgccatcggcgtcgagatcaacaagcag 15451088
Score = 210 bits (106), Expect = 9e-052
Identities = 215/250 (86%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 15450344 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 15450285
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 15450284 gaggagttccgcctgaggaatatcaagaacgaccagctcaaggcagatgccaaggctcgt 15450225
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 15450224 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 15450165
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaa-cgatctcaaggg 548
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 15450164 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatggatctcaaggg 15450105
Query: 549 cggttactag 558
|||||||||
Sbjct: 15450104 tggttactag 15450095
>gb|D22841.1|D22841 RICC1572A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1572_1A, mRNA sequence
Length = 400
Score = 343 bits (173), Expect = 9e-092
Identities = 297/335 (88%), Gaps = 9/335 (2%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| || |||| | ||||| ||||||||||| |
Sbjct: 62 ggaagatgccggcggggcacgggctgcgggcgtggac--gggacctcttcgcgcggccgt 119
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 120 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 179
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 239
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 240 gccgcaccggcgctgtctggaacgtcaccaagcgcgccatcgggttcgagatcaacaagc 299
Query: 299 aggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 300 aggtcggtaac---cgcatcatcaggaagaggatccatgtccgtntggagcatgtccagc 356
Query: 356 cctcccgttgcacagaggagttccgcctgaggaaa 390
| | | | ||||| |||||| |||| |||||||||
Sbjct: 357 cattcaggtgcaccgaggagctccg-ctgaggaaa 390
>gb|C73999.1|C73999 C73999 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30121_1A, mRNA sequence
Length = 415
Score = 327 bits (165), Expect = 6e-087
Identities = 227/244 (93%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||| |
Sbjct: 61 ggaagatgccggcggggcacgggctgcgggcgcggac--gggacctcttcgcgcggccgt 118
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 119 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 178
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||| || |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 239 gccgcacc-ggcgcgtctggaacgtcaccaagcgcgccatcgg-gtcgagatcaacaagc 296
Query: 299 aggt 302
||||
Sbjct: 297 aggt 300
>gb|AU166202.1|AU166202 AU166202 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50763, mRNA sequence
Length = 410
Score = 313 bits (158), Expect = 8e-083
Identities = 267/301 (88%), Gaps = 8/301 (2%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||| ||||||||||||||||||||| ||||||| | |||| |||||| |||| |
Sbjct: 61 ggaagatnccggcggggcacgggctgcgggcgcggacgnga-acctcttcgcg-ggccgt 118
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 119 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 178
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 179 acgtcgacgtcaaggtgaacggcgccgtgcacaanggcatnccgcacaagttctaccacg 238
Query: 239 gccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagc 298
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 239 gccgcaccggcgccgtctggaacgtcaccaagcgcgccatcnggttcgagatcaacaagc 298
Query: 299 aggttaacggt---cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagc 355
|||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct: 299 aggt---cggtaaccgcatcatcaggaagaggatccatgtccgtgtggagcatgttcagc 355
Query: 356 c 356
|
Sbjct: 356 c 356
>gb|AU064030.1|AU064030 AU064030 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3460_1A, mRNA sequence
Length = 391
Score = 283 bits (143), Expect = 7e-074
Identities = 289/336 (86%), Gaps = 10/336 (2%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcga-cctgttcgcgcggccc 117
||||||||||||||||||||||||||||| || |||| | || ||| |||||||||||
Sbjct: 54 ggaagatgccggcggggcacgggctgcgggcgnggac--gggancctcttcgcgcggccn 111
Query: 118 ttccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgac 177
|||||||||| ||| ||||||||||||||||| ||||| | || ||||| ||||||||
Sbjct: 112 ttccgcaagangggttacatcccgctcaccacctacctnaggacgtacaanatcggcgat 171
Query: 178 tacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccac 237
||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 172 tacntcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaatttctaccac 231
Query: 238 ggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaag 297
||||||||||| | |||||||| |||||||||||||| || ||||||||||||||
Sbjct: 232 ggccgcaccggcgctttttggaacgtnaccaagcgcgccatcgg-ntcgagatcaacaag 290
Query: 298 caggt---taacggtcgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcag 354
||||| |||| ||| ||||||||||| ||||||||||||| |||||||||| |||
Sbjct: 291 caggtcggtaac---cgcntcatcaggaagaggatccatgtccgtttggagcatgtccag 347
Query: 355 ccctcccgttgcacagaggagttccgcctgaggaaa 390
|| ||| | ||||| |||||| ||||||| ||||||
Sbjct: 348 ccatccaggtgcaccgaggagctccgcctnaggaaa 383
>gb|AU093356.1|AU093356 AU093356 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0773, mRNA sequence
Length = 343
Score = 276 bits (139), Expect = 2e-071
Identities = 220/242 (90%), Gaps = 5/242 (2%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| ||||||| | |||||||||||| |||| ||| |
Sbjct: 73 gatgccggcgggccacgggctgcgtgcgcggac--gggacctgttcgcg-ggccgttcag 129
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 130 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 189
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 190 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 249
Query: 243 caccgg-gagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcagg 301
|||||| ||| |||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct: 250 caccggcgag-gtctggaacgtcaccaagcgcgacatcgggttcgagatcaacaagcagg 308
Query: 302 tt 303
||
Sbjct: 309 tt 310
>gb|D39148.1|D39148 RICR2556A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 340
Score = 272 bits (137), Expect = 3e-070
Identities = 218/241 (90%), Gaps = 5/241 (2%)
Strand = Plus / Plus
Query: 63 gatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggcccttccg 122
|||||||||||| ||||||||||| || |||| | |||||||||||| |||| ||| |
Sbjct: 73 gatgccggcgggccacgggctgcgtgcgnggac--gggacctgttcgcg-ggccgttcag 129
Query: 123 caagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgactacgt 182
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 130 gaagaaggggtacatcccgctcaccacctacctccgcacctacaagatcggcgagcacgt 189
Query: 183 cgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacggccg 242
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 190 cgacgtcaaggtgaacggcgccgtgcacaaggggatgccgcacaagttctaccacggccg 249
Query: 243 caccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaagcaggt 302
|||| || |||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 250 cacc-ggcgcgtntggaacgtcaccaagcgcgccatcgg-gtngagatcaacaagcaggt 307
Query: 303 t 303
|
Sbjct: 308 t 308
>gb|AZ130887.1|AZ130887 OSJNBb0070E08r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0070E08r, DNA
sequence
Length = 526
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Minus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 378 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 319
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 318 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 259
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 258 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 199
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 198 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 139
Query: 550 ggttactaga 559
||||||||||
Sbjct: 138 ggttactaga 129
>gb|AACV01033842.1| Oryza sativa (japonica cultivar-group) Ctg033842, whole genome
shotgun sequence
Length = 2263
Score = 266 bits (134), Expect = 2e-068
Identities = 221/250 (88%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| | |||||
Sbjct: 476 cgcatcatcaggaagaggatccatgtccgtgtggagcatgtccagccatccaggtgcacc 535
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||| |||||||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 536 gaggagctccgcctgaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgt 595
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| |||
Sbjct: 596 ggtgaggttatcagcaccaagagacagcccgagggacccaaacctggtttcatggttgag 655
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
|||||||| || ||||| || || || ||||| |||||||||||||| |||||||||||
Sbjct: 656 ggtgctacgctggagactgttacccccattccgtatgatgtggtcaatgatctcaagggt 715
Query: 550 ggttactaga 559
||||||||||
Sbjct: 716 ggttactaga 725
>gb|AU029874.1|AU029874 AU029874 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50101_1A, mRNA sequence
Length = 359
Score = 254 bits (128), Expect = 7e-065
Identities = 220/245 (89%), Gaps = 5/245 (2%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| | |||| |||||| |||
Sbjct: 55 ggaagatgccggcggggcacgggctgcgggcgcggacgnga-acctcttcgcg-ggcgtn 112
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
| ||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 113 ttcgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 172
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acgtcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 232
Query: 239 gccgcaccgggagcgtc-tggaacgtcaccaagcgcgccattggcgtcgagatcaacaag 297
|||||||| || |||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 233 gccgcacc-ggnccgtcttggaacgtcaccaagcgcgccatcgg-ttcgagatcaacaag 290
Query: 298 caggt 302
|||||
Sbjct: 291 caggt 295
>gb|AU095004.1|AU095004 AU095004 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50101, mRNA sequence
Length = 464
Score = 252 bits (127), Expect = 3e-064
Identities = 255/296 (86%), Gaps = 7/296 (2%)
Strand = Plus / Plus
Query: 267 caagcgcgccattggcgtcgagatcaacaagcaggttaacggt---cgcatcatcaggaa 323
|||||||||||| ||| |||| |||||||||| ||| |||| ||||||||||||||
Sbjct: 1 caagcgcgccatcggcntcgaaatcaacaagcnggt---cggtaaccgcatcatcaggaa 57
Query: 324 gcggatccatgtccgcgtggagcatgtgcagccctcccgttgcacagaggagttccgcct 383
| ||||||||||||| ||||||||||| ||||| ||| | ||||| |||||| |||||||
Sbjct: 58 gaggatccatgtccgtgtggagcatgtccagccatccaggtgcaccgaggagctccgcct 117
Query: 384 gaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgcggtgaggtgatcag 443
||||||| |||||| || ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 118 gaggaaaatcaagaacgatcagctcaaggctgatgccaaggcccgtggtgaggttatcag 177
Query: 444 caccaagaggcagcctgtgggacccaaacctggcttcatggtcgagggtgctacactcga 503
||||||||| ||||| | ||||||||||||||| |||||||| |||||| ||| || ||
Sbjct: 178 caccaagagacagcccgagggacccaaacctggtttcatggttgagggt-ntacgctgga 236
Query: 504 gacagtcactcctattccttatgatgtggtcaacgatctcaagggcggttactaga 559
||| || || || ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 237 gactgttacccccattccgtatgatgtggtcaatgatctcaagggtggttactaga 292
>gb|C29036.1|C29036 C29036 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63251_1A, mRNA sequence
Length = 443
Score = 238 bits (120), Expect = 4e-060
Identities = 213/245 (86%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| || |||| | |||| ||||||||||| |
Sbjct: 74 ggaagatgccggcggggcacgggctgcgggcgnggacgngn-acctcttcgcgcggccgt 132
Query: 119 t-ccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgac 177
| |||||||||||| ||||||||||||||||| ||||| | || ||||| ||||||||
Sbjct: 133 ttccgcaagaagggttacatcccgctcaccacctacctnaggacgtacaanatcggcgat 192
Query: 178 tacgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccac 237
||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193 tacntcgacgtcaaggtgaacggcgccgtgcacaagggcatgccgcacaanttctaccac 252
Query: 238 ggccgcaccgggagcgtctggaacgtcaccaagcgcgccattggcgtcgagatcaacaag 297
||||| ||||| | ||||||||||||||||||| ||| || |||||||||| |||
Sbjct: 253 ggccgnaccggcgctttntggaacgtcaccaagcgcgncatcgggttcgagatcaanaag 312
Query: 298 caggt 302
|||||
Sbjct: 313 caggt 317
>gb|D15553.1|D15553 RICC0814A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0814A, mRNA sequence
Length = 365
Score = 224 bits (113), Expect = 6e-056
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 310 cgcatcatcaggaagcggatccatgtccgcgtggagcatgtgcagccctcccgttgcaca 369
||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct: 24 cgcattatcaggaagaggatccatgtccgtgtggagcatgtgcagccatccaggtgcact 83
Query: 370 gaggagttccgcctgaggaaagccaagaatgaccagctcaaggcggatgccaaggcccgc 429
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 84 gaggagttccgcctgaggaagatcaagaacgaccagctcaaggcagatgccaaggctcgt 143
Query: 430 ggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatggtcgag 489
|||||||| |||||||| ||||||||||| ||| || || || ||||||||||| |||
Sbjct: 144 ggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcatggttgag 203
Query: 490 ggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaagggc 549
||||| ||||| ||||| ||||| || || || || ||||||||||| |||||||||||
Sbjct: 204 ggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaagggt 263
Query: 550 ggttactag 558
|||||||||
Sbjct: 264 ggttactag 272
>gb|C26950.2|C26950 C26950 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C50527_2A, mRNA sequence
Length = 243
Score = 182 bits (92), Expect = 2e-043
Identities = 159/180 (88%), Gaps = 2/180 (1%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
|||||||||||||| |||||||||||||| ||||||| | | | | |||||| |||| |
Sbjct: 66 ggaagatgccggcgnggcacgggctgcgggcgcggacgggagnc-tcttcgcg-ggccgt 123
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||| ||| |
Sbjct: 124 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcgncgatt 183
Query: 179 acgtcgacgtcaaggttaacggcgccgtgcacaagggcatgccgcacaagttctaccacg 238
|||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 184 acgtcgacgtcaaggtgaacggcgccgtgcacangtgcatgtcgcacaagttctaccacg 243
>gb|AU108724.1|AU108724 AU108724 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50376, mRNA sequence
Length = 331
Score = 176 bits (89), Expect = 1e-041
Identities = 140/157 (89%)
Strand = Plus / Plus
Query: 403 cagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcctgtg 462
||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| | |
Sbjct: 4 cagctcaaggctgatgccaaggcccgtggtgaggttatcagcaccaagagacagcccgag 63
Query: 463 ggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctattcct 522
|||||||||||||| |||||||| ||||||||||| || ||||| || || || |||||
Sbjct: 64 ggacccaaacctggtttcatggttgagggtgctacgctggagactgttacccccattccg 123
Query: 523 tatgatgtggtcaacgatctcaagggcggttactaga 559
|||||||||||||| ||||||||||| ||||||||||
Sbjct: 124 tatgatgtggtcaatgatctcaagggtggttactaga 160
>gb|D15320.1|D15320 RICC0448A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0448A, mRNA sequence
Length = 196
Score = 172 bits (87), Expect = 2e-040
Identities = 129/142 (90%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 59 ggaagatgccggcggggcacgggctgcggtcgcggacccgcgacctgttcgcgcggccct 118
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |
Sbjct: 54 ggaagatgccggcggggcacgggctgcgggcgcggacg-gcgacctcttcgcgcggccgt 112
Query: 119 tccgcaagaaggggtacatcccgctcaccacgtacctgcgcacctacaagatcggcgact 178
||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| |
Sbjct: 113 tccgcaagaagggttacatcccgctcaccacctacctgaggacgtacaagatcggcgatt 172
Query: 179 acgtcgacgtcaaggttaacgg 200
|||| ||||||||||| |||||
Sbjct: 173 acgtngacgtcaaggtgaacgg 194
>gb|AU063167.2|AU063167 AU063167 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53322, mRNA sequence
Length = 387
Score = 125 bits (63), Expect = 4e-026
Identities = 135/159 (84%)
Strand = Plus / Plus
Query: 400 gaccagctcaaggcggatgccaaggcccgcggtgaggtgatcagcaccaagaggcagcct 459
|||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||
Sbjct: 9 gaccagcttaaggcagatgccaaggctcgtggtgaggtcatcagcacgaagaggcagccg 68
Query: 460 gtgggacccaaacctggcttcatggtcgagggtgctacactcgagacagtcactcctatt 519
||| || || || ||||||||||| |||||||| ||||| ||||| ||||| || ||
Sbjct: 69 cagggtcctaagcccggcttcatggttgagggtgcaacactggagactgtcacccccatc 128
Query: 520 ccttatgatgtggtcaacgatctcaagggcggttactag 558
|| || ||||||||||| ||||||||||| |||||||||
Sbjct: 129 ccgtacgatgtggtcaatgatctcaagggtggttactag 167
>gb|AU095471.1|AU095471 AU095471 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2556, mRNA sequence
Length = 353
Score = 115 bits (58), Expect = 4e-023
Identities = 162/193 (83%), Gaps = 4/193 (2%)
Strand = Plus / Plus
Query: 370 gaggagttcc-gcctgaggaaagccaagaatgaccagc-tcaaggcggatgccaaggccc 427
|||||||||| |||||||||| |||||| ||||||| ||||||| ||||||||||| |
Sbjct: 3 gaggagttccngcctgaggaagatcaagaacgaccagcctcaaggcagatgccaaggctc 62
Query: 428 gcggtgaggtgatcagcaccaagaggcagcctgtgggacccaaacctggcttcatgg--t 485
| |||||||| |||||||| ||||||||||| ||| || || || |||||||| | |
Sbjct: 63 gtggtgaggtcatcagcacgaagaggcagccgcagggtcctaagcccggcttcataggtt 122
Query: 486 cgagggtgctacactcgagacagtcactcctattccttatgatgtggtcaacgatctcaa 545
||||||||| ||||| ||||| ||||| || || || || ||||||||||| ||||||||
Sbjct: 123 cgagggtgcaacactggagactgtcacccccatcccgtacgatgtggtcaatgatctcaa 182
Query: 546 gggcggttactag 558
||| |||||||||
Sbjct: 183 gggtggttactag 195
>gb|AU030211.1|AU030211 AU030211 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50763_2Z, mRNA sequence
Length = 357
Score = 99.6 bits (50), Expect = 2e-018
Identities = 126/148 (85%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 415 gatgccaaggccc-gcggtgaggtgatc-agcaccaagagg-cagcctgtgggacccaaa 471
||||||||||||| | |||||||| ||| ||| |||||| | ||||| | ||||||||||
Sbjct: 17 gatgccaaggccccgtggtgaggttatccagcnccaagaagacagcccgagggacccaaa 76
Query: 472 cctggcttcatggtcgagggtgctacactcgagacagtcactcctattccttatgatgtg 531
||||| |||||||| |||||| ||| || ||||| || || || ||||| |||||||||
Sbjct: 77 cctggtttcatggttgagggttntacgctggagactgttacccccattccgtatgatgtg 136
Query: 532 gtcaacgatctcaagggcggttactaga 559
||||| ||||||||||| ||||||||||
Sbjct: 137 gtcaatgatctcaagggtggttactaga 164
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,110,454
Number of Sequences: 438736
Number of extensions: 1110454
Number of successful extensions: 12045
Number of sequences better than 0.5: 139
Number of HSP's better than 0.5 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10538
Number of HSP's gapped (non-prelim): 1459
length of query: 838
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 817
effective length of database: 2,791,206,460
effective search space: 2280415677820
effective search space used: 2280415677820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)