BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA... 389 e-105
ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA 389 e-105
dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRP... 381 e-103
gb|AU183932.1|AU183932 AU183932 Rice cDNA from immature lea... 264 1e-067
gb|AU162293.1|AU162293 AU162293 Rice immature leaf includin... 155 7e-035
dbj|AP004043.3| Oryza sativa (japonica cultivar-group) geno... 111 9e-022
gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) c... 111 9e-022
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 111 9e-022
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 111 9e-022
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 111 9e-022
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 111 9e-022
>dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F02, full
insert sequence
Length = 1198
Score = 389 bits (196), Expect = e-105
Identities = 402/470 (85%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 155 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 214
Query: 163 caagatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgca 222
||||| || ||||| || ||||||||||||||||||||||||||| || || |||||
Sbjct: 215 caagagccggggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgca 274
Query: 223 gcagtctggca---cgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggc 279
||| ||||||| | || || ||||||||||| ||| ||||| | |||||||||| ||
Sbjct: 275 gcaatctggcatcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgagacagc 334
Query: 280 taacattcgacttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgacctt 339
||| || | |||||||| |||||| || |||| |||||||| ||||||||| ||||
Sbjct: 335 caacgttaggcttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtcctt 394
Query: 340 cacgctcgacgatggcaccggccgcctcgatttcatcagatgggtgaatgatgcttcaga 399
|||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct: 395 cacgatcgacgatggcaccggccgcctcgatttcatcagatgggtcaatgatggtgctga 454
Query: 400 ttcttttgaaactgctgctattcagaatggtatgtacattgcggtcattggaagcctcaa 459
|||| |||||| |||||| |||||||||| ||||| || | |||||||| ||||||||
Sbjct: 455 ttctgctgaaaccgctgctgttcagaatggaatgtatgtttctgtcattggtagcctcaa 514
Query: 460 gggactgcaagagaggaagcgtgctactgctttctcaatcaggcctataaccgatttcaa 519
||| || || |||||||||||||||||||||||| | ||||||||| |||| |||| ||
Sbjct: 515 ggggcttcaggagaggaagcgtgctactgctttcgctatcaggcctgtaactgattataa 574
Query: 520 tgaggttacgctgcatttcattcagtgtgttcggatgcatatagagaaca 569
|||||| || ||||||||||||||||| || || |||||| |||||||||
Sbjct: 575 tgaggtcacactgcatttcattcagtgcgtgcgaatgcatttagagaaca 624
>ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1198
Score = 389 bits (196), Expect = e-105
Identities = 402/470 (85%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 155 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 214
Query: 163 caagatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgca 222
||||| || ||||| || ||||||||||||||||||||||||||| || || |||||
Sbjct: 215 caagagccggggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgca 274
Query: 223 gcagtctggca---cgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggc 279
||| ||||||| | || || ||||||||||| ||| ||||| | |||||||||| ||
Sbjct: 275 gcaatctggcatcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgagacagc 334
Query: 280 taacattcgacttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgacctt 339
||| || | |||||||| |||||| || |||| |||||||| ||||||||| ||||
Sbjct: 335 caacgttaggcttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtcctt 394
Query: 340 cacgctcgacgatggcaccggccgcctcgatttcatcagatgggtgaatgatgcttcaga 399
|||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct: 395 cacgatcgacgatggcaccggccgcctcgatttcatcagatgggtcaatgatggtgctga 454
Query: 400 ttcttttgaaactgctgctattcagaatggtatgtacattgcggtcattggaagcctcaa 459
|||| |||||| |||||| |||||||||| ||||| || | |||||||| ||||||||
Sbjct: 455 ttctgctgaaaccgctgctgttcagaatggaatgtatgtttctgtcattggtagcctcaa 514
Query: 460 gggactgcaagagaggaagcgtgctactgctttctcaatcaggcctataaccgatttcaa 519
||| || || |||||||||||||||||||||||| | ||||||||| |||| |||| ||
Sbjct: 515 ggggcttcaggagaggaagcgtgctactgctttcgctatcaggcctgtaactgattataa 574
Query: 520 tgaggttacgctgcatttcattcagtgtgttcggatgcatatagagaaca 569
|||||| || ||||||||||||||||| || || |||||| |||||||||
Sbjct: 575 tgaggtcacactgcatttcattcagtgcgtgcgaatgcatttagagaaca 624
>dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRPA32 mRNA for replication
protein A 30kDa, complete cds
Length = 1204
Score = 381 bits (192), Expect = e-103
Identities = 401/470 (85%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 146 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 205
Query: 163 caagatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgca 222
||||| || ||||| || ||||||||||||||||||||||||||| || || |||||
Sbjct: 206 caagagccggggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgca 265
Query: 223 gcagtctggca---cgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggc 279
||| ||||||| | || || ||||||||||| ||| ||||| | |||||||||| ||
Sbjct: 266 gcaatctggcatcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgagacagc 325
Query: 280 taacattcgacttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgacctt 339
||| || | |||||||| |||||| || |||| |||||||| ||||||||| ||||
Sbjct: 326 caacgttaggcttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtcctt 385
Query: 340 cacgctcgacgatggcaccggccgcctcgatttcatcagatgggtgaatgatgcttcaga 399
|| | |||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct: 386 catgatcgacgatggcaccggccgcctcgatttcatcagatgggtcaatgatggtgctga 445
Query: 400 ttcttttgaaactgctgctattcagaatggtatgtacattgcggtcattggaagcctcaa 459
|||| |||||| |||||| |||||||||| ||||| || | |||||||| ||||||||
Sbjct: 446 ttctgctgaaaccgctgctgttcagaatggaatgtatgtttctgtcattggtagcctcaa 505
Query: 460 gggactgcaagagaggaagcgtgctactgctttctcaatcaggcctataaccgatttcaa 519
||| || || |||||||||||||||||||||||| | ||||||||| |||| |||| ||
Sbjct: 506 ggggcttcaggagaggaagcgtgctactgctttcgctatcaggcctgtaactgattataa 565
Query: 520 tgaggttacgctgcatttcattcagtgtgttcggatgcatatagagaaca 569
|||||| || ||||||||||||||||| || || |||||| |||||||||
Sbjct: 566 tgaggtcacactgcatttcattcagtgcgtgcgaatgcatttagagaaca 615
>gb|AU183932.1|AU183932 AU183932 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61525, mRNA sequence
Length = 446
Score = 264 bits (133), Expect = 1e-067
Identities = 273/319 (85%), Gaps = 3/319 (0%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 127 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 186
Query: 163 caagatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgca 222
||||| || ||||| || ||||||||||||||||||||||||||| || || |||||
Sbjct: 187 caagagccggggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgca 246
Query: 223 gcagtctgg---cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggc 279
||| ||||| ||| || || ||||||||||| ||| ||||| | |||||||||| ||
Sbjct: 247 gcaatctggcatcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgagacagc 306
Query: 280 taacattcgacttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgacctt 339
||| || | |||||||| |||||| || |||| |||||||| ||||||||| ||||
Sbjct: 307 caacgttaggcttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtcctt 366
Query: 340 cacgctcgacgatggcaccggccgcctcgatttcatcagatgggtgaatgatgcttcaga 399
|||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct: 367 cacgatcgacgatggcaccggccgcctcgatttcatcagatgggtcaatgatggtgctga 426
Query: 400 ttcttttgaaactgctgct 418
|||| |||||| ||||||
Sbjct: 427 ttctgctgaaaccgctgct 445
>gb|AU162293.1|AU162293 AU162293 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50776, mRNA sequence
Length = 360
Score = 155 bits (78), Expect = 7e-035
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 166 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 225
Query: 163 caagatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcag 208
||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 226 caagagccggggcgcatcgagcaccatgccgctcaccgtgaagcag 271
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1124_D06
Length = 102239
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 21517 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 21458
Query: 163 caag 166
||||
Sbjct: 21457 caag 21454
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 21140 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 21081
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 21080 gatggcaccggccgcctcgatttcatcagatgg 21048
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 20447 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 20388
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 21355 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 21296
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 21295 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 21250
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 20311 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 20252
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 20251 atttagagaaca 20240
>gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005677, whole
genome shotgun sequence
Length = 14560
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 11019 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 11078
Query: 163 caag 166
||||
Sbjct: 11079 caag 11082
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 11396 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 11455
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 11456 gatggcaccggccgcctcgatttcatcagatgg 11488
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 12089 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 12148
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 12225 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 12284
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 12285 atttagagaaca 12296
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 11181 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 11240
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 11241 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 11286
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1496176 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 1496117
Query: 163 caag 166
||||
Sbjct: 1496116 caag 1496113
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 1495799 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 1495740
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 1495739 gatggcaccggccgcctcgatttcatcagatgg 1495707
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 1495106 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 1495047
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 1496014 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 1495955
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 1495954 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 1495909
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 1494970 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 1494911
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 1494910 atttagagaaca 1494899
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 22295828 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 22295769
Query: 163 caag 166
||||
Sbjct: 22295768 caag 22295765
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 22295451 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 22295392
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 22295391 gatggcaccggccgcctcgatttcatcagatgg 22295359
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 22294758 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 22294699
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 22295666 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 22295607
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 22295606 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 22295561
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 22294622 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 22294563
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 22294562 atttagagaaca 22294551
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 35748892 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 35748833
Query: 163 caag 166
||||
Sbjct: 35748832 caag 35748829
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 35748515 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 35748456
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 35748455 gatggcaccggccgcctcgatttcatcagatgg 35748423
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 35747822 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 35747763
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 35748730 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 35748671
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 35748670 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 35748625
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 35747686 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 35747627
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 35747626 atttagagaaca 35747615
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 111 bits (56), Expect = 9e-022
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 103 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttc 162
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 35660903 cttctcgccgtcgcagttcacctcctcccagaatgccgccgccgactctaccaccccttc 35660844
Query: 163 caag 166
||||
Sbjct: 35660843 caag 35660840
Score = 105 bits (53), Expect = 6e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 290 cttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcgac 349
|||||||| |||||| || |||| |||||||| ||||||||| |||||||| |||||
Sbjct: 35660526 cttgtgggattggtcagtggcaagacggagcggaacaccgatgtgtccttcacgatcgac 35660467
Query: 350 gatggcaccggccgcctcgatttcatcagatgg 382
|||||||||||||||||||||||||||||||||
Sbjct: 35660466 gatggcaccggccgcctcgatttcatcagatgg 35660434
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 443 gtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatcagg 502
|||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||||
Sbjct: 35659833 gtcattggtagcctcaaggggcttcaggagaggaagcgtgctactgctttcgctatcagg 35659774
Score = 63.9 bits (32), Expect = 2e-007
Identities = 88/106 (83%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 173 ggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctgg- 231
||||| || ||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 35660741 ggcgcatcgagcaccatgccgctcaccgtgaagcagatctctgaagcgcagcaatctggc 35660682
Query: 232 --cacgggcgacaagggcgctccgttcatcgtcaatggcgtcgaga 275
||| || || ||||||||||| ||| ||||| | ||||||||||
Sbjct: 35660681 atcaccggggagaagggcgctcccttcgtcgtcgacggcgtcgaga 35660636
Score = 63.9 bits (32), Expect = 2e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
|||||||| |||| |||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 35659697 tcaggcctgtaactgattataatgaggtcacactgcatttcattcagtgcgtgcgaatgc 35659638
Query: 558 atatagagaaca 569
|| |||||||||
Sbjct: 35659637 atttagagaaca 35659626
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,904,144
Number of Sequences: 438736
Number of extensions: 1904144
Number of successful extensions: 13576
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13490
Number of HSP's gapped (non-prelim): 76
length of query: 1274
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1253
effective length of database: 2,791,206,460
effective search space: 3497381694380
effective search space used: 3497381694380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)