BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192481.2.2
(1053 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB664991.1|CB664991 OSJNEd11A22.f OSJNEd Oryza sativa (j... 56 4e-005
dbj|AK067264.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK104922.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|XM_480878.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
ref|XM_507173.1| PREDICTED Oryza sativa (japonica cultivar-... 56 4e-005
ref|XM_507174.2| PREDICTED Oryza sativa (japonica cultivar-... 56 4e-005
ref|XM_507574.1| PREDICTED Oryza sativa (japonica cultivar-... 56 4e-005
dbj|AP003907.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AU095296.1|AU095296 AU095296 Rice cDNA from immature lea... 54 2e-004
gb|AU197783.1|AU197783 AU197783 Rice mature leaf Oryza sati... 54 2e-004
dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK066677.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK067288.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK104507.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
ref|NT_107116.1| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|AACV01022808.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01026234.1| Oryza sativa (japonica cultivar-group) C... 54 2e-004
ref|XM_480882.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
ref|XM_480883.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AC116368.3| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AU070505.1|AU070505 AU070505 Rice shoot Oryza sativa (ja... 52 6e-004
gb|AU076212.1|AU076212 AU076212 Rice cDNA from immature lea... 52 6e-004
gb|AU197784.1|AU197784 AU197784 Rice mature leaf Oryza sati... 52 6e-004
gb|AU076211.2|AU076211 AU076211 Rice cDNA from immature lea... 52 6e-004
dbj|AK059753.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
dbj|AK107541.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
gb|AC135418.3| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|AC132492.3| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK073282.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
ref|NT_107142.1| Oryza sativa (japonica cultivar-group) 46 0.039
gb|AACV01005693.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
gb|AACV01022525.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP002746.2| Oryza sativa (japonica cultivar-group) geno... 46 0.039
ref|NM_189699.1| Oryza sativa (japonica cultivar-group), p... 46 0.039
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 46 0.039
dbj|AP002537.2| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|AC145322.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|AC134232.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03... 44 0.15
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 44 0.15
emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC O... 44 0.15
gb|AACV01006370.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01021927.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01024962.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|NM_197313.1| Oryza sativa (japonica cultivar-group) put... 44 0.15
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 44 0.15
ref|XM_470661.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 44 0.15
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
>gb|CB664991.1|CB664991 OSJNEd11A22.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11A22 5', mRNA sequence
Length = 872
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 221 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 162
>dbj|AK067264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096H10, full
insert sequence
Length = 1062
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 286 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 227
>dbj|AK104922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D02, full
insert sequence
Length = 1024
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 248 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 189
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 128325 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 128266
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 12399 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 12340
>ref|XM_480878.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1024
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 248 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 189
>ref|XM_507173.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.39 mRNA
Length = 1062
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 286 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 227
>ref|XM_507174.2| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.39 mRNA
Length = 1032
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 248 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 189
>ref|XM_507574.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.39 mRNA
Length = 1024
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 248 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 189
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1217_D10
Length = 103188
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 3933 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 3874
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 21677 agacgtcggaggcgaggacgacggcccggtcggagtgggcggcgccggtgacgtaggcc 21619
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 24071 accggagagtgagactcgagccattc 24046
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 8155742 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 8155683
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 8173486 agacgtcggaggcgaggacgacggcccggtcggagtgggcggcgccggtgacgtaggcc 8173428
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 8175880 accggagagtgagactcgagccattc 8175855
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 143403 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 143344
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 7745409 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 7745350
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
|||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 8388216 aagacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 8388157
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 8405960 agacgtcggaggcgaggacgacggcccggtcggagtgggcggcgccggtgacgtaggcc 8405902
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 8408354 accggagagtgagactcgagccattc 8408329
>gb|AU095296.1|AU095296 AU095296 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61160, mRNA sequence
Length = 415
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 33 ctttcaccggagagtgagactcgagccattc 3
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 249 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 200
>gb|AU197783.1|AU197783 AU197783 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21459, mRNA sequence
Length = 450
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 368 ctttcaccggagagtgagactcgagccattc 338
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 218 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 160
>dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E06, full
insert sequence
Length = 980
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 362 ctttcaccggagagtgagactcgagccattc 332
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggc 797
|||||||||||||||||||||||||
Sbjct: 208 agacgtcggaggcgaggacgacggc 184
Score = 48.1 bits (24), Expect = 0.010
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 427 aggatctcgatcggccatttcacctctttcat 458
||||||||||| |||||||| |||||||||||
Sbjct: 561 aggatctcgatgggccatttaacctctttcat 530
>dbj|AK066677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071C10, full
insert sequence
Length = 954
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 389 ctttcaccggagagtgagactcgagccattc 359
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 239 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 181
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 606 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 557
>dbj|AK067288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100O03, full
insert sequence
Length = 896
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 400 ctttcaccggagagtgagactcgagccattc 370
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 250 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 192
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 617 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 568
>dbj|AK104507.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G07, full
insert sequence
Length = 938
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 385 ctttcaccggagagtgagactcgagccattc 355
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 235 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 177
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 602 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 553
>ref|NT_107116.1| Oryza sativa (japonica cultivar-group)
Length = 906209
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 812979 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 812921
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 831286 aagacgtcggaggcgaggacgatggcccggc 831256
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 815354 accggagagtgagactcgagccattc 815329
>gb|AACV01022808.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022808, whole
genome shotgun sequence
Length = 21163
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 16054 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 15996
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 18430 accggagagtgagactcgagccattc 18405
>gb|AACV01026234.1| Oryza sativa (japonica cultivar-group) Ctg026234, whole genome
shotgun sequence
Length = 15423
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 9540 agacgtcggaggcgaggacgacggcccggtcggagtgggcggcgccggtgacgtaggcc 9482
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 11932 accggagagtgagactcgagccattc 11907
>ref|XM_480882.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 264
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 235 agacgtcggaggcgaggacgacggcccggtcggagtgggcggcgccggtgacgtaggcc 177
>ref|XM_480883.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 982
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 623 ctttcaccggagagtgagcctcgagccattc 653
|||||||||||||||||| ||||||||||||
Sbjct: 364 ctttcaccggagagtgagactcgagccattc 334
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggc 797
|||||||||||||||||||||||||
Sbjct: 210 agacgtcggaggcgaggacgacggc 186
Score = 48.1 bits (24), Expect = 0.010
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 427 aggatctcgatcggccatttcacctctttcat 458
||||||||||| |||||||| |||||||||||
Sbjct: 563 aggatctcgatgggccatttaacctctttcat 532
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100
genomic scaffold, whole genome shotgun sequence
Length = 6309838
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 765991 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 765933
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 768367 accggagagtgagactcgagccattc 768342
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 8621035 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 8620977
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 4781267 cgccgcgagcacggcggcgaggc 4781245
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 8623411 accggagagtgagactcgagccattc 8623386
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 9656446 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 9656388
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 9674753 aagacgtcggaggcgaggacgatggcccggc 9674723
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 4791371 cgccgcgagcacggcggcgaggc 4791349
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 4783161 cgccgcgagcacggcggcgaggc 4783139
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 9658821 accggagagtgagactcgagccattc 9658796
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0061D06, complete sequence
Length = 172126
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 93231 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 93289
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 74924 aagacgtcggaggcgaggacgatggcccggc 74954
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 90856 accggagagtgagactcgagccattc 90881
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagctcgcggcgccgctgacgtaggcc 831
||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||||
Sbjct: 9728143 agacgtcggaggcgaggacgatggcccggccggagtgggcggcgccggtgacgtaggcc 9728085
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 9746450 aagacgtcggaggcgaggacgatggcccggc 9746420
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 4810155 cgccgcgagcacggcggcgaggc 4810133
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 4801945 cgccgcgagcacggcggcgaggc 4801923
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 628 accggagagtgagcctcgagccattc 653
||||||||||||| ||||||||||||
Sbjct: 9730518 accggagagtgagactcgagccattc 9730493
>gb|AU070505.1|AU070505 AU070505 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0631_2A, mRNA sequence
Length = 665
Score = 52.0 bits (26), Expect = 6e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcatgtcgtcggca 468
||||| ||||| || || |||||||| || |||||||| |||||||||||||| || |||
Sbjct: 539 gtgtcattctgagctccaaggatctcaatgggccatttgacctctttcatgtcatcagca 480
Query: 469 gt 470
||
Sbjct: 479 gt 478
>gb|AU076212.1|AU076212 AU076212 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61027_2Z, mRNA sequence
Length = 470
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 99 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 50
>gb|AU197784.1|AU197784 AU197784 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21459, mRNA sequence
Length = 450
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 90 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 41
>gb|AU076211.2|AU076211 AU076211 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61027_1A, mRNA sequence
Length = 478
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcat 458
||||| |||||| | || ||||||||||| |||||||| |||||||||||
Sbjct: 257 gtgtcattctggcctccaaggatctcgatgggccatttaacctctttcat 208
>dbj|AK059753.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B07, full
insert sequence
Length = 1135
Score = 52.0 bits (26), Expect = 6e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 409 gtgtcgttctgggcccccaggatctcgatcggccatttcacctctttcatgtcgtcggca 468
||||| ||||| || || |||||||| || |||||||| |||||||||||||| || |||
Sbjct: 637 gtgtcattctgagctccaaggatctcaatgggccatttgacctctttcatgtcatcagca 578
Query: 469 gt 470
||
Sbjct: 577 gt 576
>dbj|AK107541.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H09, full
insert sequence
Length = 1126
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 920 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 871
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0035J16, complete sequence
Length = 170233
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 26535 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 26486
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 29533 gtcgtggacgacctcgccggcctc 29510
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
complete sequence
Length = 146303
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 127261 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 127212
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 130259 gtcgtggacgacctcgccggcctc 130236
>gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012113, whole
genome shotgun sequence
Length = 69919
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 46667 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 46618
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 49665 gtcgtggacgacctcgccggcctc 49642
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 628589 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 628540
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 631587 gtcgtggacgacctcgccggcctc 631564
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 1735090 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 1735041
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 1738088 gtcgtggacgacctcgccggcctc 1738065
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 19035403 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 19035354
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 19038401 gtcgtggacgacctcgccggcctc 19038378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 259 tctgcggtcttgacggcgaaagggtcggtggtgttgtacctgcaggcgaa 308
||||| || ||||||||||| |||||||| | |||||| |||||||||||
Sbjct: 19323186 tctgcagttttgacggcgaacgggtcggtagcgttgtatctgcaggcgaa 19323137
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 849 gtcgtggacgacctcgccggcctc 872
||||||||||||||||||||||||
Sbjct: 19326184 gtcgtggacgacctcgccggcctc 19326161
>dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F02, full
insert sequence
Length = 1044
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 260 aagacgtcggaggcgaggacgatggcccggc 230
>dbj|AK073282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027F11, full
insert sequence
Length = 1705
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 938 gcggtggtggccgccgccgccgc 960
|||||||||||||||||||||||
Sbjct: 329 gcggtggtggccgccgccgccgc 307
>dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D03, full
insert sequence
Length = 1036
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 260 aagacgtcggaggcgaggacgatggcccggc 230
>ref|NT_107142.1| Oryza sativa (japonica cultivar-group)
Length = 341890
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 138369 cgccgcgagcacggcggcgaggc 138347
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 130159 cgccgcgagcacggcggcgaggc 130137
>gb|AACV01005693.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005693, whole
genome shotgun sequence
Length = 27647
Score = 46.1 bits (23), Expect = 0.039
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 772 aagacgtcggaggcgaggacgacggcgcggc 802
|||||||||||||||||||||| ||| ||||
Sbjct: 22176 aagacgtcggaggcgaggacgatggcccggc 22146
>gb|AACV01022525.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022525, whole
genome shotgun sequence
Length = 18471
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 955 cgccgcgagcacggcggcgaggc 977
|||||||||||||||||||||||
Sbjct: 6117 cgccgcgagcacggcggcgaggc 6095
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 938 gcggtggtggccgccgccgccgc 960
|||||||||||||||||||||||
Sbjct: 5051697 gcggtggtggccgccgccgccgc 5051719
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,581,018
Number of Sequences: 438736
Number of extensions: 2581018
Number of successful extensions: 56191
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52618
Number of HSP's gapped (non-prelim): 3543
length of query: 1053
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1032
effective length of database: 2,791,206,460
effective search space: 2880525066720
effective search space used: 2880525066720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)