BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059564.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
gb|CB643407.1|CB643407 OSJNEb04B10.f OSJNEb Oryza sativa (j... 363 9e-098
gb|CB643408.1|CB643408 OSJNEb04B10.r OSJNEb Oryza sativa (j... 363 9e-098
gb|CB655565.1|CB655565 OSJNEc09B24.r OSJNEc Oryza sativa (j... 363 9e-098
gb|AY327043.1| Oryza sativa (japonica cultivar-group) putat... 363 9e-098
ref|NM_192063.1| Oryza sativa (japonica cultivar-group), p... 363 9e-098
dbj|AK069248.1| Oryza sativa (japonica cultivar-group) cDNA... 355 2e-095
gb|AACV01002123.1| Oryza sativa (japonica cultivar-group) c... 210 8e-052
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 210 8e-052
dbj|AP004363.3| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
dbj|AP003347.3| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 210 8e-052
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 210 8e-052
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 210 8e-052
>dbj|AK059564.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H06, full
insert sequence
Length = 1514
Score = 371 bits (187), Expect = e-100
Identities = 364/423 (86%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 752 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 811
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 812 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 871
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 872 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 931
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 932 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 991
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 992 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 1051
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
||| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 1052 ggatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 1111
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 1112 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 1171
Query: 429 gtc 431
|||
Sbjct: 1172 gtc 1174
>gb|CB643407.1|CB643407 OSJNEb04B10.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04B10 5', mRNA sequence
Length = 826
Score = 363 bits (183), Expect = 9e-098
Identities = 363/423 (85%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 262 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 321
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 322 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 381
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 382 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 441
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 442 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 501
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 502 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 561
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 562 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 621
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 622 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 681
Query: 429 gtc 431
|||
Sbjct: 682 gtc 684
>gb|CB643408.1|CB643408 OSJNEb04B10.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04B10 3', mRNA sequence
Length = 837
Score = 363 bits (183), Expect = 9e-098
Identities = 363/423 (85%)
Strand = Plus / Minus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 817 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 758
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 757 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 698
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 697 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 638
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 637 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 578
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 577 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 518
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 517 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 458
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 457 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 398
Query: 429 gtc 431
|||
Sbjct: 397 gtc 395
>gb|CB655565.1|CB655565 OSJNEc09B24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09B24 3', mRNA sequence
Length = 812
Score = 363 bits (183), Expect = 9e-098
Identities = 363/423 (85%)
Strand = Plus / Minus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 811 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 752
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 751 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 692
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 691 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 632
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 631 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 572
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 571 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 512
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 511 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 452
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 451 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 392
Query: 429 gtc 431
|||
Sbjct: 391 gtc 389
>gb|AY327043.1| Oryza sativa (japonica cultivar-group) putative ATPase ATP1 mRNA,
complete cds
Length = 1821
Score = 363 bits (183), Expect = 9e-098
Identities = 363/423 (85%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 1235 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 1294
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1295 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 1354
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 1355 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 1414
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 1415 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 1474
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1475 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 1534
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 1535 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 1594
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 1595 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 1654
Query: 429 gtc 431
|||
Sbjct: 1655 gtc 1657
>ref|NM_192063.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1560
Score = 363 bits (183), Expect = 9e-098
Identities = 363/423 (85%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 1131 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 1190
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1191 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 1250
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | |||||| |||| || || |||||
Sbjct: 1251 catcaatattaaccttaaaactgttgaggttgctaccgatgttgacatagatgaagttgc 1310
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 1311 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 1370
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1371 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 1430
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 1431 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 1490
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 1491 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 1550
Query: 429 gtc 431
|||
Sbjct: 1551 gtc 1553
>dbj|AK069248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K18, full
insert sequence
Length = 2020
Score = 355 bits (179), Expect = 2e-095
Identities = 362/423 (85%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 1258 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 1317
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
|| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1318 acggaggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcact 1377
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||| ||||| |||| ||| ||| || | || | ||||| |||| || || |||||
Sbjct: 1378 catcaatattaaccttaaaactgttgaggttgctaccgatgtcgacatagatgaagttgc 1437
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct: 1438 acggaggacagaaggctatagtggtgacgaccttacaaatgtttgccgtgatgcttcaat 1497
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
|||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1498 gaatggcatgagacgaaagattgcaggcaagacccgcgatgagattaagaacatgtcaaa 1557
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
|| ||||| | || ||||| ||||||||||| ||||||| ||| ||||||| |||||
Sbjct: 1558 agatgagatctcaaaagacccagtggccatgtgtgactttgaggaagctctggccaaggt 1617
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||| || || | || ||||| ||||| ||||||||| ||| ||||||||
Sbjct: 1618 tcagaagagtgtatcacccgctgatatagaaaagcacgagaagtggcaggccgagtttgg 1677
Query: 429 gtc 431
|||
Sbjct: 1678 gtc 1680
>gb|AACV01002123.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002123, whole
genome shotgun sequence
Length = 34804
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 31304 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 31245
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 31244 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 31185
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 31184 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 31125
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 31124 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 31065
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 31064 gagaagtggcaggccgagtttgggtc 31039
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 31801 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 31742
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 31741 aatattaacctta 31729
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 32448 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 32389
Query: 69 g 69
|
Sbjct: 32388 g 32388
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 28216662 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 28216721
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 28216722 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 28216781
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 28216782 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 28216841
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 28216842 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 28216901
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 28216902 gagaagtggcaggccgagtttgggtc 28216927
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 28216165 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 28216224
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 28216225 aatattaacctta 28216237
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 28215518 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 28215577
Query: 69 g 69
|
Sbjct: 28215578 g 28215578
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 2664045 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 2664104
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2664105 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 2664164
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 2664165 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 2664224
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 2664225 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 2664284
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 2664285 gagaagtggcaggccgagtttgggtc 2664310
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 2663548 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 2663607
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 2663608 aatattaacctta 2663620
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 2662901 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 2662960
Query: 69 g 69
|
Sbjct: 2662961 g 2662961
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0019E03
Length = 152092
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 151191 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 151250
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 151251 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 151310
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 151311 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 151370
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 151371 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 151430
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 151431 gagaagtggcaggccgagtttgggtc 151456
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 150694 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 150753
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 150754 aatattaacctta 150766
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 150047 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 150106
Query: 69 g 69
|
Sbjct: 150107 g 150107
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0445E10
Length = 145912
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 19986 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 20045
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 20046 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 20105
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 20106 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 20165
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 20166 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 20225
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 20226 gagaagtggcaggccgagtttgggtc 20251
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 19489 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 19548
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 19549 aatattaacctta 19561
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 18842 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 18901
Query: 69 g 69
|
Sbjct: 18902 g 18902
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 2598660 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 2598719
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2598720 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 2598779
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 2598780 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 2598839
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 2598840 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 2598899
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 2598900 gagaagtggcaggccgagtttgggtc 2598925
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 2598163 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 2598222
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 2598223 aatattaacctta 2598235
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 2597516 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 2597575
Query: 69 g 69
|
Sbjct: 2597576 g 2597576
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 27800381 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 27800440
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 27800441 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 27800500
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 27800501 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 27800560
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 27800561 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 27800620
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 27800621 gagaagtggcaggccgagtttgggtc 27800646
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 27799884 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 27799943
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 27799944 aatattaacctta 27799956
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 27799237 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 27799296
Query: 69 g 69
|
Sbjct: 27799297 g 27799297
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 210 bits (106), Expect = 8e-052
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||| |||| || || ||||| ||||||||||||||||||||||| || || || |||
Sbjct: 28135992 gatgttgacatagatgaagttgcacggaggacagaaggctatagtggtgacgaccttaca 28136051
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 28136052 aatgtttgccgtgatgcttcaatgaatggcatgagacgaaagattgcaggcaagacccgc 28136111
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||| |||||||||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct: 28136112 gatgagattaagaacatgtcaaaagatgagatctcaaaagacccagtggccatgtgtgac 28136171
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
|||| ||| ||||||| ||||||||||||||||| || || | || ||||| |||||
Sbjct: 28136172 tttgaggaagctctggccaaggttcagaagagtgtatcacccgctgatatagaaaagcac 28136231
Query: 406 gagaagtggatggctgagtttgggtc 431
||||||||| ||| |||||||||||
Sbjct: 28136232 gagaagtggcaggccgagtttgggtc 28136257
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 73 aggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcacttatc 132
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct: 28135495 aggctggagaagcgtatttatattccacttccaaattttgaaagcagaaaggcactcatc 28135554
Query: 133 aacattaatctta 145
|| ||||| ||||
Sbjct: 28135555 aatattaacctta 28135567
Score = 81.8 bits (41), Expect = 5e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 28134848 aaaaatagttatggttctggcagctaccaactttccatgggatattgatgaagcactgag 28134907
Query: 69 g 69
|
Sbjct: 28134908 g 28134908
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 906,772
Number of Sequences: 438736
Number of extensions: 906772
Number of successful extensions: 4284
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4190
Number of HSP's gapped (non-prelim): 87
length of query: 738
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 717
effective length of database: 2,791,206,460
effective search space: 2001295031820
effective search space used: 2001295031820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)