BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.22
(333 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB651199.1|CB651199 OSJNEb16B05.r OSJNEb Oryza sativa (j... 54 5e-005
gb|CB672844.1|CB672844 OSJNEe07B16.r OSJNEe Oryza sativa (j... 54 5e-005
gb|CF309590.1|CF309590 ABF--03-N08.g1 ABF3-overexpressing t... 54 5e-005
emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-gr... 54 5e-005
dbj|AK062029.1| Oryza sativa (japonica cultivar-group) cDNA... 54 5e-005
dbj|AK065793.1| Oryza sativa (japonica cultivar-group) cDNA... 54 5e-005
gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) c... 54 5e-005
ref|XM_472851.1| Oryza sativa (japonica cultivar-group), p... 54 5e-005
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 54 5e-005
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 54 5e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 54 5e-005
emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromoso... 54 5e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 5e-005
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 48 0.003
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 48 0.003
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 48 0.003
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 48 0.003
gb|AU070534.1|AU070534 AU070534 Rice shoot Oryza sativa (ja... 48 0.003
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 48 0.003
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 48 0.003
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 48 0.003
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 48 0.003
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 48 0.003
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 48 0.003
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 48 0.003
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 48 0.003
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 48 0.003
gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (j... 48 0.003
gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (j... 48 0.003
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 48 0.003
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 48 0.003
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 48 0.003
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 48 0.003
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 48 0.003
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 48 0.003
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 48 0.003
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 48 0.003
gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (j... 48 0.003
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 48 0.003
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 48 0.003
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 48 0.003
gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-... 48 0.003
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.003
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 48 0.003
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) c... 48 0.003
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 48 0.003
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.003
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 48 0.003
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 48 0.003
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.003
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (ja... 42 0.18
gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (ja... 42 0.18
dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.18
dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.18
gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) c... 42 0.18
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.18
ref|NM_193731.1| Oryza sativa (japonica cultivar-group), p... 42 0.18
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.18
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 42 0.18
dbj|AP003217.3| Oryza sativa (japonica cultivar-group) geno... 42 0.18
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.18
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.18
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.18
dbj|AG024208.1| Oryza sativa (japonica cultivar-group) DNA,... 40 0.72
dbj|AG206166.1| Oryza sativa (japonica cultivar-group) DNA,... 40 0.72
gb|AU081347.1|AU081347 AU081347 Rice cDNA from immature lea... 40 0.72
gb|CA999014.1|CA999014 S234M_B11 Rice cold stress germinati... 40 0.72
gb|CA999016.1|CA999016 S234M_B12 Rice cold stress germinati... 40 0.72
dbj|AK066908.1| Oryza sativa (japonica cultivar-group) cDNA... 40 0.72
gb|AACV01009971.1| Oryza sativa (japonica cultivar-group) c... 40 0.72
ref|XM_472852.1| Oryza sativa (japonica cultivar-group), p... 40 0.72
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.72
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.72
gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (j... 38 2.8
>gb|CB651199.1|CB651199 OSJNEb16B05.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16B05 3', mRNA sequence
Length = 780
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 486 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 436
>gb|CB672844.1|CB672844 OSJNEe07B16.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07B16 3', mRNA sequence
Length = 692
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 459 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 409
>gb|CF309590.1|CF309590 ABF--03-N08.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-N08, mRNA sequence
Length = 583
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 452 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 402
>emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0053D18,
*** SEQUENCING IN PROGRESS ***
Length = 156939
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 131661 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 131711
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 144235 tactttgcatggtctctgcttgacaactttga 144266
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 124458 tactttgcatggtctctgcttgacaactttga 124489
>dbj|AK062029.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G08, full
insert sequence
Length = 1777
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1498 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 1548
>dbj|AK065793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041M21, full
insert sequence
Length = 1976
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1545 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 1595
>gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010847, whole
genome shotgun sequence
Length = 28761
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 7568 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 7518
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 14771 tactttgcatggtctctgcttgacaactttga 14740
>ref|XM_472851.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1602
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1442 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 1492
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1307663 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 1307613
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 1314866 tactttgcatggtctctgcttgacaactttga 1314835
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 1295089 tactttgcatggtctctgcttgacaactttga 1295058
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 2206466 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 2206516
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 2199263 tactttgcatggtctctgcttgacaactttga 2199294
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 2206466 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 2206516
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 2199263 tactttgcatggtctctgcttgacaactttga 2199294
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
complete sequence
Length = 160155
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 24651 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 24601
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 31854 tactttgcatggtctctgcttgacaactttga 31823
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 12077 tactttgcatggtctctgcttgacaactttga 12046
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 54.0 bits (27), Expect = 5e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 9 caaatgtgcaaggctacttcgcttggtctctgctggacaactttgaatggt 59
|||||||| | || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 23703739 caaatgtgaaggggtacttcgcatggtctctgcttgacaactttgagtggt 23703689
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 23710942 tactttgcatggtctctgcttgacaactttga 23710911
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 23691165 tactttgcatggtctctgcttgacaactttga 23691134
>gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31025_7Z, mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 22 ggctacttcgcctggtctctcctggacaactt 53
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 85 ggctacttcgcctggtctctcctggacaactt 116
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 47 ggctacttcgcctggtctctcctggacaactt 78
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 177 ggctacttcgcctggtctctcctggacaactt 208
>gb|AU070534.1|AU070534 AU070534 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2162_7A, mRNA sequence
Length = 389
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 360 tacttcgcgtggtctctgctggacaact 387
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 165 ggctacttcgcctggtctctcctggacaactt 196
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 190 ggctacttcgcctggtctctcctggacaactt 221
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 298 ggctacttcgcctggtctctcctggacaactt 329
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 302 ggctacttcgcctggtctctcctggacaactt 333
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 58 ggctacttcgcctggtctctcctggacaactt 89
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 161 ggctacttcgcctggtctctcctggacaactt 192
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 626 ggctacttcgcctggtctctcctggacaactt 657
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 627 ggctacttcgcctggtctctcctggacaactt 658
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 626 ggctacttcgcctggtctctcctggacaactt 657
>gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03A24 3', mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 372 tacttcgcgtggtctctgctggacaact 345
>gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E17 3', mRNA sequence
Length = 763
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 424 tacttcgcgtggtctctgctggacaact 397
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 396 ggctacttcgcctggtctctcctggacaactt 365
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 508 ggctacttcgcctggtctctcctggacaactt 477
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 483 ggctacttcgcctggtctctcctggacaactt 452
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 705 ggctacttcgcctggtctctcctggacaactt 736
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaactt 364
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaactt 364
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 493 ggctacttcgcctggtctctcctggacaactt 462
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaactt 364
>gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08A17 3', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 521 tacttcgcgtggtctctgctggacaact 494
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 388 ggctacttcgcctggtctctcctggacaactt 357
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 116 ggctacttcgcctggtctctcctggacaactt 147
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1472 ggctacttcgcctggtctctcctggacaactt 1503
>gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-glucosidase mRNA,
complete cds
Length = 2032
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 1561 tacttcgcgtggtctctgctggacaact 1588
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 908 ggctacttcgcctggtctctcctggacaactt 939
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1467 ggctacttcgcctggtctctcctggacaactt 1498
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1463 ggctacttcgcctggtctctcctggacaactt 1494
>dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A05, full
insert sequence
Length = 1828
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 1479 tacttcgcgtggtctctgctggacaact 1506
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 73870 tacttcgcgtggtctctgctggacaact 73843
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 79157 ggctacttcgcctggtctctcctggacaactt 79188
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1464 ggctacttcgcctggtctctcctggacaactt 1495
>gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006096, whole
genome shotgun sequence
Length = 15111
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 9910 tacttcgcgtggtctctgctggacaact 9883
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 4017 ggctacttcgcctggtctctcctggacaactt 3986
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1461 ggctacttcgcctggtctctcctggacaactt 1492
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 1008586 tacttcgcgtggtctctgctggacaact 1008559
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1251134 ggctacttcgcctggtctctcctggacaactt 1251103
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 1728241 ggctacttcgcctggtctctcctggacaactt 1728210
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 5879136 tacttcgcgtggtctctgctggacaact 5879109
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 28994404 ggctacttcgcctggtctctcctggacaactt 28994373
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 6071498 tacttcgcgtggtctctgctggacaact 6071471
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 28037193 ggctacttcgcctggtctctcctggacaactt 28037162
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 5844253 tacttcgcgtggtctctgctggacaact 5844226
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 27945869 ggctacttcgcctggtctctcctggacaactt 27945838
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaact 50
|||||||| |||||||||||||||||||
Sbjct: 5845040 tacttcgcgtggtctctgctggacaact 5845013
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| |||||||||||
Sbjct: 81597 ggctacttcgcctggtctctcctggacaactt 81566
>gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2816_5A, mRNA sequence
Length = 345
Score = 42.1 bits (21), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||||| ||||| |||||
Sbjct: 28 ggctacttcgcctggtctctcctgganaactt 59
>gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2571, mRNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 ggctacttcgcttggtctctgctggacaactt 51
||||||||||| |||||| | |||||||||||
Sbjct: 149 ggctacttcgcctggtctntcctggacaactt 180
>dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C08, full
insert sequence
Length = 1113
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 856 aggctacttcgcctggtccctgctggataactt 888
>dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006J10, full
insert sequence
Length = 1833
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 1557 aggctacttcgcctggtccctgctggataactt 1589
>gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001283, whole
genome shotgun sequence
Length = 12034
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 4156 aggctacttcgcctggtccctgctggataactt 4124
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 17839369 aggctacttcgcctggtccctgctggataactt 17839401
>ref|NM_193731.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1389
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 1236 aggctacttcgcctggtccctgctggataactt 1268
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 757601 aggctacttcgcctggtccctgctggataactt 757633
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0455H03
Length = 175947
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 7774 aggctacttcgcctggtccctgctggataactt 7806
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0094H06
Length = 147245
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 142187 aggctacttcgcctggtccctgctggataactt 142219
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003
genomic scaffold, whole genome shotgun sequence
Length = 8539496
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 760247 aggctacttcgcctggtccctgctggataactt 760279
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 17385370 aggctacttcgcctggtccctgctggataactt 17385402
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 19 aggctacttcgcttggtctctgctggacaactt 51
|||||||||||| ||||| |||||||| |||||
Sbjct: 17760652 aggctacttcgcctggtccctgctggataactt 17760684
>dbj|AG024208.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4001_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4001, genomic survey sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 185 tactttgcatggtctctgcttgacaactttga 154
>dbj|AG206166.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4054_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4054, genomic survey sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 185 tactttgcatggtctctgcttgacaactttga 154
>gb|AU081347.1|AU081347 AU081347 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60678_2Z, mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 53 tactttgcatggtctctgcttgacaactttga 84
>gb|CA999014.1|CA999014 S234M_B11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 111 tactttgcatggtctctgcttgacaactttga 142
>gb|CA999016.1|CA999016 S234M_B12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 111 tactttgcatggtctctgcttgacaactttga 142
>dbj|AK066908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092D04, full
insert sequence
Length = 3403
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 3074 tactttgcatggtctctgcttgacaactttga 3105
>gb|AACV01009971.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009971, whole
genome shotgun sequence
Length = 22179
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 4186 tactttgcatggtctctgcttgacaactttga 4217
>ref|XM_472852.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1590
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 1387 tactttgcatggtctctgcttgacaactttga 1418
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 1597194 tactttgcatggtctctgcttgacaactttga 1597163
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 40.1 bits (20), Expect = 0.72
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 tacttcgcttggtctctgctggacaactttga 54
||||| || ||||||||||| |||||||||||
Sbjct: 20741293 tactttgcatggtctctgcttgacaactttga 20741262
>gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M14 3', mRNA sequence
Length = 410
Score = 38.2 bits (19), Expect = 2.8
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 20 ggctacttcgcttggtctctgctggacaactttga 54
||||||||||| |||| | | ||||||||||||||
Sbjct: 132 ggctacttcgcctggtttttcctggacaactttga 98
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 241,338
Number of Sequences: 438736
Number of extensions: 241338
Number of successful extensions: 3266
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3048
Number of HSP's gapped (non-prelim): 218
length of query: 333
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 313
effective length of database: 2,791,645,196
effective search space: 873784946348
effective search space used: 873784946348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)