BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.1
(747 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU093795.1|AU093795 AU093795 Rice panicle at flowering s... 139 2e-030
gb|AU093825.1|AU093825 AU093825 Rice panicle at flowering s... 139 2e-030
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 139 2e-030
gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering s... 139 2e-030
gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering s... 139 2e-030
gb|AU182416.1|AU182416 AU182416 Rice panicle at flowering s... 139 2e-030
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 139 2e-030
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 139 2e-030
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 139 2e-030
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 139 2e-030
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 139 2e-030
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 139 2e-030
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 139 2e-030
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 133 2e-028
gb|AU165467.1|AU165467 AU165467 Rice panicle at flowering s... 131 6e-028
gb|AU163584.1|AU163584 AU163584 Rice panicle at flowering s... 129 2e-027
gb|AU165536.1|AU165536 AU165536 Rice panicle at flowering s... 125 4e-026
gb|C98492.1|C98492 C98492 Rice panicle at flowering stage O... 119 2e-024
gb|AU182308.1|AU182308 AU182308 Rice panicle at flowering s... 109 2e-021
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 103 1e-019
gb|C98424.1|C98424 C98424 Rice panicle at flowering stage O... 98 8e-018
gb|AU093742.1|AU093742 AU093742 Rice panicle at flowering s... 96 3e-017
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 96 3e-017
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cD... 92 5e-016
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 92 5e-016
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 92 5e-016
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 92 5e-016
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 92 5e-016
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 92 5e-016
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 92 5e-016
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 92 5e-016
gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid ... 86 3e-014
gb|AC107224.2| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
ref|NM_187641.1| Oryza sativa (japonica cultivar-group), p... 86 3e-014
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 86 3e-014
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|C27175.1|C27175 C27175 Rice callus cDNA Oryza sativa (ja... 80 2e-012
gb|AU184077.1|AU184077 AU184077 Rice root Oryza sativa (jap... 80 2e-012
dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
ref|NM_197701.1| Oryza sativa (japonica cultivar-group) bet... 80 2e-012
gb|AZ134444.1|AZ134444 OSJNBb0112C04f CUGI Rice BAC Library... 78 8e-012
gb|AU085857.1|AU085857 AU085857 Rice panicle at flowering s... 78 8e-012
gb|AU182422.1|AU182422 AU182422 Rice panicle at flowering s... 78 8e-012
gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Or... 78 8e-012
dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA... 78 8e-012
dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA... 78 8e-012
dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA... 78 8e-012
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 78 8e-012
gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) c... 78 8e-012
gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) c... 78 8e-012
gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) c... 78 8e-012
ref|NM_187639.1| Oryza sativa (japonica cultivar-group), p... 78 8e-012
ref|NM_187642.1| Oryza sativa (japonica cultivar-group), p... 78 8e-012
ref|NM_187643.1| Oryza sativa (japonica cultivar-group), p... 78 8e-012
gb|C98559.1|C98559 C98559 Rice panicle at flowering stage O... 76 3e-011
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 74 1e-010
gb|AU094113.1|AU094113 AU094113 Rice panicle at flowering s... 74 1e-010
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 74 1e-010
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 74 1e-010
gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flow... 74 1e-010
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 74 1e-010
gb|AU093769.1|AU093769 AU093769 Rice panicle at flowering s... 72 5e-010
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 72 5e-010
gb|AU101113.1|AU101113 AU101113 Rice panicle at flowering s... 68 7e-009
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 68 7e-009
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 68 7e-009
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 66 3e-008
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 66 3e-008
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 66 3e-008
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 66 3e-008
gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Or... 64 1e-007
gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonic... 64 1e-007
gb|AU077523.1|AU077523 AU077523 Rice callus Oryza sativa (j... 64 1e-007
gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (j... 64 1e-007
gb|AU094597.1|AU094597 AU094597 Rice panicle at ripening st... 64 1e-007
gb|AU173230.1|AU173230 AU173230 Rice root Oryza sativa (jap... 64 1e-007
gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pi... 64 1e-007
gb|CV722636.1|CV722636 root--01-B24.g1 Rice root lambda pha... 64 1e-007
gb|C98807.1|C98807 C98807 Rice panicle at flowering stage O... 62 5e-007
gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering s... 62 5e-007
gb|AU184180.1|AU184180 AU184180 Rice root Oryza sativa (jap... 62 5e-007
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 62 5e-007
gb|AU311941.1|AU311941 AU311941 Oryza sativa anther cDNA Or... 62 5e-007
gb|AU165472.1|AU165472 AU165472 Rice panicle at flowering s... 60 2e-006
gb|AU108787.1|AU108787 AU108787 Rice callus Oryza sativa (j... 58 7e-006
gb|C72628.1|C72628 C72628 Rice panicle at flowering stage O... 56 3e-005
gb|C96739.1|C96739 C96739 Rice callus Oryza sativa (japonic... 56 3e-005
gb|C98558.1|C98558 C98558 Rice panicle at flowering stage O... 56 3e-005
gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (j... 56 3e-005
gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering s... 56 3e-005
gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonic... 54 1e-004
gb|AU184078.1|AU184078 AU184078 Rice root Oryza sativa (jap... 54 1e-004
gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AU029750.1|AU029750 AU029750 Rice panicle shorter than 3... 52 4e-004
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 52 4e-004
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 52 4e-004
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 52 4e-004
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|C71918.1|C71918 C71918 Rice panicle at flowering stage O... 50 0.002
gb|AU166877.1|AU166877 AU166877 Rice callus (2001) Oryza sa... 50 0.002
gb|AU165452.1|AU165452 AU165452 Rice panicle at flowering s... 48 0.007
gb|AU311892.1|AU311892 AU311892 Oryza sativa anther cDNA Or... 48 0.007
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 48 0.007
dbj|AP004744.2| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01014743.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01014745.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AU165568.1|AU165568 AU165568 Rice panicle at flowering s... 46 0.027
gb|C99057.1|C99057 C99057 Rice panicle at flowering stage O... 44 0.11
gb|C99058.1|C99058 C99058 Rice panicle at flowering stage O... 44 0.11
gb|AU063799.1|AU063799 AU063799 Rice panicle at flowering s... 44 0.11
gb|AU064130.1|AU064130 AU064130 Rice panicle at flowering s... 44 0.11
gb|AU064799.1|AU064799 AU064799 Rice panicle (between 3cm t... 44 0.11
gb|AU064856.1|AU064856 AU064856 Rice panicle (between 3cm t... 44 0.11
gb|AU094930.1|AU094930 AU094930 Rice panicle (between 3cm t... 44 0.11
gb|AU094937.1|AU094937 AU094937 Rice panicle (between 3cm t... 44 0.11
gb|AU165348.1|AU165348 AU165348 Rice panicle at flowering s... 44 0.11
gb|AU165658.1|AU165658 AU165658 Rice panicle at flowering s... 44 0.11
gb|AU172895.1|AU172895 AU172895 Rice panicle (between 3cm t... 44 0.11
gb|AU184759.1|AU184759 AU184759 Rice root Oryza sativa (jap... 44 0.11
gb|CV720622.1|CV720622 YBH--01-E06.b1 Rice before heading y... 44 0.11
gb|CV720634.1|CV720634 YBH--01-E20.b1 Rice before heading y... 44 0.11
gb|AU311893.1|AU311893 AU311893 Oryza sativa anther cDNA Or... 44 0.11
gb|AU311894.1|AU311894 AU311894 Oryza sativa anther cDNA Or... 44 0.11
gb|AACV01014746.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|C72838.1|C72838 C72838 Rice panicle at flowering stage O... 42 0.42
gb|AU070620.1|AU070620 AU070620 Rice shoot Oryza sativa (ja... 42 0.42
gb|AU094457.1|AU094457 AU094457 Rice panicle at ripening st... 42 0.42
gb|AU163583.1|AU163583 AU163583 Rice panicle at flowering s... 42 0.42
gb|CF326079.1|CF326079 JMT1--05-A19.g1 AtJMT-overexpressing... 42 0.42
gb|CF333826.1|CF333826 JMT--02-N24.g1 AtJMT-overexpressing ... 42 0.42
>gb|AU093795.1|AU093795 AU093795 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0533, mRNA sequence
Length = 553
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 111 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 170
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 171 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 230
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 231 cgtcatcccg 240
Score = 65.9 bits (33), Expect = 3e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||||||||| |||||| |||||||| |||||||| || ||||| | ||
Sbjct: 1 ttccacgtcgagaagggctccaacccaaactacctcgccgtgctcgtcaagttcntcgcc 60
Query: 249 gacgacggtgac 260
||||||||||||
Sbjct: 61 gacgacggtgac 72
>gb|AU093825.1|AU093825 AU093825 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0657, mRNA sequence
Length = 578
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 142 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 201
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 202 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 261
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 262 cgtcatcccg 271
Score = 67.9 bits (34), Expect = 7e-009
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||||||| | ||||||||| ||||| |||||||| || ||||| || ||
Sbjct: 32 ttccacgtcgagaagggntccaaccccaantacctcgccgtgctcgtcaagttcgtcgcc 91
Query: 249 gacgacggtgac 260
||||||||||||
Sbjct: 92 gacgacggtgac 103
>gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2136, mRNA sequence
Length = 711
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 275 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 334
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 335 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 394
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 395 cgtcatcccg 404
Score = 101 bits (51), Expect = 5e-019
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 142 agttcagaagggtgcggtgcaagtaccccgccgggcagaagattgtgttccacatcgaga 201
||||||| |||||||| ||||||||||||| ||| |||||| | |||||| ||||||
Sbjct: 118 agttcaggagggtgcgctgcaagtaccccggcggccagaaggtcaccttccacgtcgaga 177
Query: 202 agggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcggacgacggtgac 260
|||||| ||||||||||||||| |||||||| || ||||| || || ||||||||||||
Sbjct: 178 agggctccaaccccaactacctcgccgtgctcgtcaagttcgtcgccgacgacggtgac 236
>gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0513, mRNA sequence
Length = 645
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 203 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 262
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 263 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 322
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 323 cgtcatcccg 332
Score = 85.7 bits (43), Expect = 3e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| ||||| |
Sbjct: 30 cggcatcatcgacatncagttcaggagggtgcgctgcaagtaccccggcggcaagaaggt 89
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| |||||| |||||||| |||||||| || ||||| ||
Sbjct: 90 cac-ttccacgtcgagaagggctccaacccnaactacctcgccgtgctcgtnaagttcgt 148
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 149 cgccgacgacggtgac 164
>gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2044, mRNA sequence
Length = 672
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 229 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 288
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 289 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 348
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 349 cgtcatcccg 358
Score = 85.7 bits (43), Expect = 3e-014
Identities = 114/137 (83%), Gaps = 1/137 (0%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggca-gaaga 183
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| || ||||
Sbjct: 54 cggcatcatcgacatncagttcaggagggtgcgctgcaagtaccccggcggccaagaagg 113
Query: 184 ttgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttg 243
| |||||| |||||||||||| ||||||||||||| | |||||||| || ||||| |
Sbjct: 114 tcaccttccacgtcgagaagggctccaaccccaactacntcgccgtgctcgtaaagttcg 173
Query: 244 tggcggacgacggtgac 260
| || ||||||||||||
Sbjct: 174 tcgccgacgacggtgac 190
>gb|AU182416.1|AU182416 AU182416 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2742, mRNA sequence
Length = 447
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 9 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 68
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 69 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 128
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 129 cgtcatcccg 138
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 697 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 756
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 757 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 816
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 817 cgtcatcccg 826
Score = 95.6 bits (48), Expect = 3e-017
Identities = 114/136 (83%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 523 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 582
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
| |||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 583 cacctcccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 642
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 643 cgccgacgacggtgac 658
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 407 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 466
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 467 ggcaaggcgttcggc 481
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 697 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 756
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 757 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 816
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 817 cgtcatcccg 826
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 523 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 582
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 583 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 642
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 643 cgccgacgacggtgac 658
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 407 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 466
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 467 ggcaaggcgttcggc 481
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Minus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 117202 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 117143
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 117142 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 117083
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 117082 cgtcatcccg 117073
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 117376 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 117317
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 117316 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 117257
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 117256 cgccgacgacggtgac 117241
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 117492 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 117433
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 117432 ggcaaggcgttcggc 117418
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Minus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 1112 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 1053
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 1052 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 993
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 992 cgtcatcccg 983
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 1286 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 1227
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 1226 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 1167
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 1166 cgccgacgacggtgac 1151
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 1402 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 1343
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 1342 ggcaaggcgttcggc 1328
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 681 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 740
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 741 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 800
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 801 cgtcatcccg 810
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 507 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 566
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 567 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 626
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 627 cgccgacgacggtgac 642
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 391 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 450
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 451 ggcaaggcgttcggc 465
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 2869383 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 2869442
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 2869443 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 2869502
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 2869503 cgtcatcccg 2869512
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 2869209 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 2869268
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 2869269 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 2869328
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 2869329 cgccgacgacggtgac 2869344
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 3233938 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 3233879
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 3233878 aagctccgccactcgggcatcatcgacatccagttcag 3233841
Score = 77.8 bits (39), Expect = 8e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 3262896 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 3262955
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 3262956 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 3263015
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 3263016 catcgagttca 3263026
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 3239797 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 3239738
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 3239737 cagctccgccacgccggcatcatcgacatccagttcag 3239700
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 3252015 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 3251956
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 3251955 cagctccgccacgccggcatcatcgacatccagttca 3251919
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 356 gctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaa 415
|||| ||| |||||||||||||||| || || |||||||||||||| | || |||||||
Sbjct: 3263828 gctccaggcccccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaa 3263887
Query: 416 agacgtcatcccgccgaactggag 439
||||||||||| | ||||||||
Sbjct: 3263888 caacgtcatcccggccaactggag 3263911
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 2869093 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 2869152
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 2869153 ggcaaggcgttcggc 2869167
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 3233608 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 3233549
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 3233548 ccggcgaactgg 3233537
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 3239475 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 3239416
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 3239415 tcatcccggccaactggag 3239397
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 3251358 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 3251310
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 8899097 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 8899156
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 8899157 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 8899216
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 8899217 cgtcatcccg 8899226
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 8898923 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 8898982
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 8898983 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 8899042
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 8899043 cgccgacgacggtgac 8899058
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 9287097 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 9287038
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 9287037 aagctccgccactcgggcatcatcgacatccagttcag 9287000
Score = 77.8 bits (39), Expect = 8e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 9315771 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 9315830
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 9315831 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 9315890
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 9315891 catcgagttca 9315901
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 9292956 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 9292897
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 9292896 cagctccgccacgccggcatcatcgacatccagttcag 9292859
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 9305174 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 9305115
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 9305114 cagctccgccacgccggcatcatcgacatccagttca 9305078
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 356 gctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaa 415
|||| ||| |||||||||||||||| || || |||||||||||||| | || |||||||
Sbjct: 9316703 gctccaggcccccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaa 9316762
Query: 416 agacgtcatcccgccgaactggag 439
||||||||||| | ||||||||
Sbjct: 9316763 caacgtcatcccggccaactggag 9316786
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 8898807 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 8898866
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 8898867 ggcaaggcgttcggc 8898881
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 9286767 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 9286708
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 9286707 ccggcgaactgg 9286696
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 9292634 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 9292575
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 9292574 tcatcccggccaactggag 9292556
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 9304517 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 9304469
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 19764891 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 19764950
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 19764951 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 19765010
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 19765011 cgtcatcccg 19765020
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 19764717 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 19764776
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 19764777 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 19764836
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 19764837 cgccgacgacggtgac 19764852
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 20152891 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 20152832
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 20152831 aagctccgccactcgggcatcatcgacatccagttcag 20152794
Score = 77.8 bits (39), Expect = 8e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 20181565 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 20181624
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 20181625 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 20181684
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 20181685 catcgagttca 20181695
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 20158750 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 20158691
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 20158690 cagctccgccacgccggcatcatcgacatccagttcag 20158653
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 20170968 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 20170909
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 20170908 cagctccgccacgccggcatcatcgacatccagttca 20170872
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 356 gctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaa 415
|||| ||| |||||||||||||||| || || |||||||||||||| | || |||||||
Sbjct: 20182497 gctccaggcccccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaa 20182556
Query: 416 agacgtcatcccgccgaactggag 439
||||||||||| | ||||||||
Sbjct: 20182557 caacgtcatcccggccaactggag 20182580
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 19764601 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 19764660
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 19764661 ggcaaggcgttcggc 19764675
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 20152561 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 20152502
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 20152501 ccggcgaactgg 20152490
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 20158428 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 20158369
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 20158368 tcatcccggccaactggag 20158350
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 20170311 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 20170263
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 20947189 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 20947248
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 20947249 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 20947308
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 20947309 cgtcatcccg 20947318
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 20947015 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 20947074
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 20947075 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 20947134
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 20947135 cgccgacgacggtgac 20947150
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 21311744 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 21311685
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 21311684 aagctccgccactcgggcatcatcgacatccagttcag 21311647
Score = 77.8 bits (39), Expect = 8e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 21340702 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 21340761
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 21340762 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 21340821
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 21340822 catcgagttca 21340832
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 21317603 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 21317544
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 21317543 cagctccgccacgccggcatcatcgacatccagttcag 21317506
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 21329821 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 21329762
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 21329761 cagctccgccacgccggcatcatcgacatccagttca 21329725
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 356 gctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaa 415
|||| ||| |||||||||||||||| || || |||||||||||||| | || |||||||
Sbjct: 21341634 gctccaggcccccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaa 21341693
Query: 416 agacgtcatcccgccgaactggag 439
||||||||||| | ||||||||
Sbjct: 21341694 caacgtcatcccggccaactggag 21341717
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 20946899 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 20946958
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 20946959 ggcaaggcgttcggc 20946973
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 21311414 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 21311355
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 21311354 ccggcgaactgg 21311343
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 21317281 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 21317222
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 21317221 tcatcccggccaactggag 21317203
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 21329164 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 21329116
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 139 bits (70), Expect = 2e-030
Identities = 115/130 (88%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 20958453 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 20958512
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 20958513 caaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 20958572
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 20958573 cgtcatcccg 20958582
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 20958279 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 20958338
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 20958339 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 20958398
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 20958399 cgccgacgacggtgac 20958414
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 21323008 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 21322949
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 21322948 aagctccgccactcgggcatcatcgacatccagttcag 21322911
Score = 77.8 bits (39), Expect = 8e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 21351965 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 21352024
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 21352025 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 21352084
Query: 137 cgtcgagttca 147
| |||||||||
Sbjct: 21352085 catcgagttca 21352095
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 21328867 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 21328808
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 21328807 cagctccgccacgccggcatcatcgacatccagttcag 21328770
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 21341085 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 21341026
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 21341025 cagctccgccacgccggcatcatcgacatccagttca 21340989
Score = 63.9 bits (32), Expect = 1e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 356 gctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaa 415
|||| ||| |||||||||||||||| || || |||||||||||||| | || |||||||
Sbjct: 21352897 gctccaggcccccttctccatccgcatccgcaacgagtccggcaagacgctcgtcgccaa 21352956
Query: 416 agacgtcatcccgccgaactggag 439
||||||||||| | ||||||||
Sbjct: 21352957 caacgtcatcccggccaactggag 21352980
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 20958163 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 20958222
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 20958223 ggcaaggcgttcggc 20958237
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 21322678 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 21322619
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 21322618 ccggcgaactgg 21322607
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 21328545 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 21328486
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 21328485 tcatcccggccaactggag 21328467
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 21340428 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 21340380
>gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1237, mRNA sequence
Length = 561
Score = 133 bits (67), Expect = 2e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | ||
Sbjct: 123 gtggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccact 182
Query: 359 caagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaaga 418
||||| || |||||||| ||| |||||| |||||||||||||| |||||||||||||
Sbjct: 183 caaggcaccnttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaaga 242
Query: 419 cgtcatcccg 428
||||||||||
Sbjct: 243 cgtcatcccg 252
Score = 79.8 bits (40), Expect = 2e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgtggcg 248
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| || ||
Sbjct: 14 ttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgtcgcc 73
Query: 249 gacgacggtgac 260
||||||||||||
Sbjct: 74 gacgacggtgac 85
>gb|AU165467.1|AU165467 AU165467 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1271, mRNA sequence
Length = 527
Score = 131 bits (66), Expect = 6e-028
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 300 tggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgctc 359
|||| |||||||||||| || |||||||||||||||||||||||||| |||| | | |||
Sbjct: 78 tggaggcccatgaagctgtcgtggggcgccatctggaggatggacaccgccacgccactc 137
Query: 360 aagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagac 419
|||| |||||||| || ||| |||||| |||||||||||||| ||||||||||||||
Sbjct: 138 aaggcacccttctcnattcgcgtcaccaccgagtccggcaagagcctcatcgccaaagac 197
Query: 420 gtcatcccg 428
|||||||||
Sbjct: 198 gtcatcccg 206
>gb|AU163584.1|AU163584 AU163584 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2227, mRNA sequence
Length = 535
Score = 129 bits (65), Expect = 2e-027
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 306 cccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgctcaagggc 365
||||||||||| || |||||||||||||||||||||||||| |||| | |||||||
Sbjct: 102 cccatgaagctgtcntggggcgccatctggaggatggacaccgccacgcnactcaaggca 161
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 162 cccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaagacgtcatc 221
Query: 426 ccg 428
|||
Sbjct: 222 ccg 224
Score = 50.1 bits (25), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 210 aaccccaactacctggccgtgcttgtgaagtttgtggcggacgacggtgac 260
|||||||||||||| |||||||| | ||||| || || ||||||||||||
Sbjct: 4 aaccccaactacctcgccgtgctcntcaagttcgtcgcngacgacggtgac 54
>gb|AU165536.1|AU165536 AU165536 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2427, mRNA sequence
Length = 487
Score = 125 bits (63), Expect = 4e-026
Identities = 115/131 (87%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctct-tggggcgccatctggaggatggacactgccaaggcgc 357
||||| |||||||||||| || |||||||||||||||||||||||||| |||| | | |
Sbjct: 50 gtggaggcccatgaagctgtccgtggggcgccatctggaggatggacaccgccacgccac 109
Query: 358 tcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaag 417
|||||| ||||||||||| ||| |||||| |||||||||||||| ||||||||||||
Sbjct: 110 tcaaggcacccttctccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaag 169
Query: 418 acgtcatcccg 428
|||||||||||
Sbjct: 170 acgtcatcccg 180
>gb|C98492.1|C98492 C98492 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0331_6Z, mRNA sequence
Length = 418
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
|||||||||||||||||||||||||| |||| | | ||||||| ||||||||||| |||
Sbjct: 4 tggggcgccatctggaggatggacaccgccacgccactcaaggcacccttctccattcgc 63
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatcccg 428
|||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 64 gtcaccaccgagtccggcaagagcctcatcgccaaagacgtcatcccg 111
>gb|AU182308.1|AU182308 AU182308 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1672, mRNA sequence
Length = 438
Score = 109 bits (55), Expect = 2e-021
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 312 aagctctcttggggcgccatctggaggatggacactgccaaggcgctcaagggccccttc 371
||||| || |||||||||||||||||||||| | | |||| | | ||||||| ||||||
Sbjct: 1 aagctgtcgtggggcgccatctggaggatggncnccgccacgccactcaaggcacccttc 60
Query: 372 tccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatcccg 428
||||| ||| |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 61 tccattcgcgtcaccaccgagtccggcaagagcctcatcgccaaagacgtcatcccg 117
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 125 cggcatcatggacgtcgagttcagaagggtgcggtgcaagtaccccgccgggcagaagat 184
||||||||| ||| | ||||||| |||||||| ||||||||||||| ||| |||||| |
Sbjct: 251 cggcatcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggt 310
Query: 185 tgtgttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagtttgt 244
|||||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||
Sbjct: 311 caccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaagttcgt 370
Query: 245 ggcggacgacggtgac 260
|| ||||||||||||
Sbjct: 371 cgccgacgacggtgac 386
Score = 61.9 bits (31), Expect = 5e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 9 acggtgtacatcactgacatgaactacgagcctatcgctccctaccacttcgacttgagc 68
||||||| |||||| ||||||||||||||||| ||| | | |||||||||||||| |
Sbjct: 135 acggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctcc 194
Query: 69 ggcaaggccttcggc 83
|||||||| ||||||
Sbjct: 195 ggcaaggcgttcggc 209
>gb|C98424.1|C98424 C98424 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0127_6Z, mRNA sequence
Length = 573
Score = 97.6 bits (49), Expect = 8e-018
Identities = 113/132 (85%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctcttggggcgccatctggaggatggacactgccaaggcgct 358
||||| |||||||||||| | |||||||||||||||||||||||||| |||| | | ||
Sbjct: 134 gtggaggcccatgaagctgttgtggggcgccatctggaggatggacaccgccacgccact 193
Query: 359 caagggccccttctccatccgcctcaccagcgagt-ccggcaagaaggtcatcg-ccaaa 416
||||| || |||||||| ||| |||||| ||||| ||||||||| |||||| |||||
Sbjct: 194 caaggcaccnttctccattcgcgtcaccaccgagtcccggcaagagcctcatcgcccaaa 253
Query: 417 gacgtcatcccg 428
||||||||||||
Sbjct: 254 gacgtcatcccg 265
>gb|AU093742.1|AU093742 AU093742 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0077, mRNA sequence
Length = 490
Score = 95.6 bits (48), Expect = 3e-017
Identities = 114/132 (86%), Gaps = 3/132 (2%)
Strand = Plus / Plus
Query: 299 gtggaagcccatgaagctctct-tggggcgccat-ctggaggatggacactgccaaggcg 356
||||| |||||||||||| || ||||||||||| ||||||||||||||| |||| | |
Sbjct: 56 gtggaggcccatgaagctgtccgtggggcgccattctggaggatggacaccgccacgcca 115
Query: 357 ctcaagggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaa 416
||||||| ||||||||||| ||| |||||| ||||| |||||||| |||||||||||
Sbjct: 116 ctcaaggcacccttctccattcgcgtcaccaccgagt-cggcaagagcctcatcgccaaa 174
Query: 417 gacgtcatcccg 428
||||||||||||
Sbjct: 175 gacgtcatcccg 186
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1119_C05
Length = 126112
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 74603 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 74544
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 74543 caagctccgccactccggcatcat 74520
>gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017536, whole
genome shotgun sequence
Length = 64614
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 14291 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 14232
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 14231 caagctccgccactccggcatcat 14208
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 5978736 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 5978677
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 5978676 caagctccgccactccggcatcat 5978653
>gb|CH401229.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000066
genomic scaffold, whole genome shotgun sequence
Length = 2575203
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 998039 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 997980
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 997979 caagctccgccactccggcatcat 997956
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 6024742 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 6024683
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 6024682 caagctccgccactccggcatcat 6024659
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 95.6 bits (48), Expect = 3e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 50 ctaccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacga 109
||||||||||||| ||||||||| ||| |||||| || |||| ||||| |||||||||||
Sbjct: 6211210 ctaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacga 6211151
Query: 110 caagcttcgccactgcggcatcat 133
|||||| ||||||| |||||||||
Sbjct: 6211150 caagctccgccactccggcatcat 6211127
>gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 636
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 501 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 560
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 561 aagctccgccactcgggcatcatcgacatccagttcag 598
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
insert sequence
Length = 1259
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 494 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 553
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 554 aagctccgccactcgggcatcatcgacatccagttcag 591
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 824 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 883
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 884 ccggcgaactgg 895
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
insert sequence
Length = 1263
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 500 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 559
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 560 aagctccgccactcgggcatcatcgacatccagttcag 597
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 830 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 889
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 890 ccggcgaactgg 901
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
insert sequence
Length = 1257
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 494 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 553
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 554 aagctccgccactcgggcatcatcgacatccagttcag 591
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 824 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 883
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 884 ccggcgaactgg 895
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
insert sequence
Length = 1257
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 494 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 553
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 554 aagctccgccactcgggcatcatcgacatccagttcag 591
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 824 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 883
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 884 ccggcgaactgg 895
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 22615 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 22674
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 22675 aagctccgccactcgggcatcatcgacatccagttcag 22712
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 16756 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 16815
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 16816 cagctccgccacgccggcatcatcgacatccagttcag 16853
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 4538 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 4597
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 4598 cagctccgccacgccggcatcatcgacatccagttca 4634
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 22945 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 23004
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 23005 ccggcgaactgg 23016
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 17078 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 17137
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 17138 tcatcccggccaactggag 17156
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 5195 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 5243
>gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022091, whole
genome shotgun sequence
Length = 36005
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 21909 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 21968
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 21969 aagctccgccactcgggcatcatcgacatccagttcag 22006
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| | ||| ||||| ||||||
Sbjct: 16050 taccacttcgacctgagcggcacggcgttcggcgccatggcgaggccggggctgaacgac 16109
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
|||| |||||| ||||||||| ||| || |||||||
Sbjct: 16110 cagctccgccacgccggcatcatcgacatccagttcag 16147
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| |||| ||||||
Sbjct: 3832 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggcagaacgac 3891
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttca 147
|||| |||||| ||||||||| ||| || ||||||
Sbjct: 3892 cagctccgccacgccggcatcatcgacatccagttca 3928
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 22239 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 22298
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 22299 ccggcgaactgg 22310
Score = 46.1 bits (23), Expect = 0.027
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacg 420
|||||||||||||| ||||| | ||||||||||||| ||| ||||||||| | | |
Sbjct: 16372 agggccccttctccctccgcatggtcagcgagtccggccagaccgtcatcgcccaccagg 16431
Query: 421 tcatcccgccgaactggag 439
|||||||| | ||||||||
Sbjct: 16432 tcatcccggccaactggag 16450
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgcca 414
|||||||| ||||| |||||| ||||||||||||| || || ||||||
Sbjct: 4489 cccttctcgctccgcatcaccaacgagtccggcaagcagctcgtcgcca 4537
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
(OSJNBb0014I11.3), mRNA
Length = 1240
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 481 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 540
Query: 111 aagcttcgccactgcggcatcatggacgtcgagttcag 148
||||| ||||||| |||||||| ||| || |||||||
Sbjct: 541 aagctccgccactcgggcatcatcgacatccagttcag 578
Score = 56.0 bits (28), Expect = 3e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 366 cccttctccatccgcctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatc 425
||||||||| ||||| || |||||| |||||||||| | || ||||||| ||||||||
Sbjct: 811 cccttctccctccgcatccgcagcgactccggcaagacgctcgtcgccaacaacgtcatc 870
Query: 426 ccgccgaactgg 437
||| ||||||||
Sbjct: 871 ccggcgaactgg 882
>gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-K17, mRNA sequence
Length = 587
Score = 85.7 bits (43), Expect = 3e-014
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 51 taccacttcgacttgagcggcaaggccttcggctccctggcaaagcccgggctcaacgac 110
|||||||||||| ||||||||| ||| |||||| || |||| ||||| ||||||||||||
Sbjct: 494 taccacttcgacctgagcggcacggcgttcggcgccatggccaagccggggctcaacgac 553
Query: 111 aagcttcgccactgcggcatcat 133
||||| ||||||| ||||||||
Sbjct: 554 aagctccgccactcgggcatcat 576
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0009C08, complete sequence
Length = 137033
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 98091 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 98150
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 98151 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 98197
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 107490 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 107431
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 107430 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 107384
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 103895 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 103954
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 103955 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 104001
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 93428 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 93487
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 93488 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 93534
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 97789 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 97832
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 107622 ttccacatcgagaaggcctccaaccccaactacct 107588
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 97959 ttccacatcgagaaggcctccaaccccaactacct 97993
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 93296 ttccacatcgagaaggcctccaaccccaactacct 93330
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 103763 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 103814
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 103590 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 103636
>gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005739,
whole genome shotgun sequence
Length = 3939
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 236 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 177
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 176 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 130
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 538 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 495
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 368 ttccacatcgagaaggcctccaaccccaactacct 334
>ref|NM_187641.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 687
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 529 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 588
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 589 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 635
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 344 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 387
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 370561 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370620
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 370621 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 370667
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 379960 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 379901
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 379900 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 379854
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 376365 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 376424
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 376425 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 376471
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 365898 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 365957
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 365958 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 366004
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 370259 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 370302
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 380092 ttccacatcgagaaggcctccaaccccaactacct 380058
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 370429 ttccacatcgagaaggcctccaaccccaactacct 370463
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 365766 ttccacatcgagaaggcctccaaccccaactacct 365800
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaaga 402
|||| ||||||||| ||||| |||||| ||||||||||||||
Sbjct: 169312 aggggcccttctccctccgcatcaccaacgagtccggcaaga 169353
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 376233 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 376284
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 376060 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 376106
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 392784 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 392725
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 392724 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 392678
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 396705 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 396646
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 396645 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 396599
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 387213 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 387154
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 387153 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 387107
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 393086 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 393043
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 396837 ttccacatcgagaaggcctccaaccccaactacct 396803
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 392916 ttccacatcgagaaggcctccaaccccaactacct 392882
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 383539 ttccacatcgagaaggcctccaaccccaactacct 383505
Score = 52.0 bits (26), Expect = 4e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctcc 374
||||| ||||| |||||||| ||||| ||||| ||||||||||||| ||||||
Sbjct: 383409 tggggtgccatttggaggatagacacccccaagccgctcaagggccctttctcc 383356
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaaga 402
|||| ||||||||| ||||| |||||| ||||||||||||||
Sbjct: 198550 aggggcccttctccctccgcatcaccaacgagtccggcaaga 198591
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 387345 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 387294
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 387518 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 387472
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 585146 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 585087
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 585086 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 585040
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 589067 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 589008
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 589007 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 588961
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 579575 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 579516
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 579515 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 579469
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 585448 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 585405
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 589199 ttccacatcgagaaggcctccaaccccaactacct 589165
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 585278 ttccacatcgagaaggcctccaaccccaactacct 585244
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 575901 ttccacatcgagaaggcctccaaccccaactacct 575867
Score = 52.0 bits (26), Expect = 4e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctcc 374
||||| ||||| |||||||| ||||| ||||| ||||||||||||| ||||||
Sbjct: 575771 tggggtgccatttggaggatagacacccccaagccgctcaagggccctttctcc 575718
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaaga 402
|||| ||||||||| ||||| |||||| ||||||||||||||
Sbjct: 390912 aggggcccttctccctccgcatcaccaacgagtccggcaaga 390953
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 579707 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 579656
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 579880 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 579834
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 370561 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370620
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 370621 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 370667
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 379960 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 379901
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 379900 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 379854
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 376365 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 376424
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 376425 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 376471
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 365898 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 365957
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 365958 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 366004
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 370259 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 370302
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 380092 ttccacatcgagaaggcctccaaccccaactacct 380058
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 370429 ttccacatcgagaaggcctccaaccccaactacct 370463
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 365766 ttccacatcgagaaggcctccaaccccaactacct 365800
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaaga 402
|||| ||||||||| ||||| |||||| ||||||||||||||
Sbjct: 169312 aggggcccttctccctccgcatcaccaacgagtccggcaaga 169353
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 376233 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 376284
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 376060 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 376106
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 370563 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370622
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 370623 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 370669
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 379962 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 379903
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 379902 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 379856
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| || ||||||||||| |||||| ||||| | |||||||||||||||||| ||||
Sbjct: 376367 tggggtgctatctggaggatagacactcccaagccactcaagggccccttctccctccgt 376426
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||||| | | ||||| | ||||||| |||||||||||
Sbjct: 376427 gtcaccaccgagtctgaccagaagcttgtcgccaacgacgtcatccc 376473
Score = 77.8 bits (39), Expect = 8e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 321 tggggcgccatctggaggatggacactgccaaggcgctcaagggccccttctccatccgc 380
||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 365900 tggggtgccatttggaggatagacacccccaagccgctcaagggccccttctccgtccgc 365959
Query: 381 ctcaccagcgagtccggcaagaaggtcatcgccaaagacgtcatccc 427
|||||| |||| ||| ||||| |||||||| | |||| ||||||
Sbjct: 365960 gtcaccaccgagggtggcgagaagatcatcgccgaggacgccatccc 366006
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 19 tcactgacatgaactacgagcctatcgctccctaccacttcgac 62
|||| ||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 370261 tcaccgacatgaacgacgagcccatcgctgcctaccacttcgac 370304
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 380094 ttccacatcgagaaggcctccaaccccaactacct 380060
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 370431 ttccacatcgagaaggcctccaaccccaactacct 370465
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacct 223
|||||||||||||||| || |||||||||||||||
Sbjct: 365768 ttccacatcgagaaggcctccaaccccaactacct 365802
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 361 agggccccttctccatccgcctcaccagcgagtccggcaaga 402
|||| ||||||||| ||||| |||||| ||||||||||||||
Sbjct: 169312 aggggcccttctccctccgcatcaccaacgagtccggcaaga 169353
Score = 48.1 bits (24), Expect = 0.007
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 189 ttccacatcgagaagggctgcaaccccaactacctggccgtgcttgtgaagt 240
|||||| | |||||||||| ||||||||||||| | || |||||||| ||||
Sbjct: 376235 ttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 376286
Score = 46.1 bits (23), Expect = 0.027
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 acatcactgacatgaactacgagcctatcgctccctaccacttcgac 62
||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 376062 acatcaccgacatgaacactgagcctatcgccgcctaccacttcgac 376108
>gb|C27175.1|C27175 C27175 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51142_1A, mRNA sequence
Length = 462
Score = 79.8 bits (40), Expect = 2e-012
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 45 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 104
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 105 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 164
Query: 137 cgtcgagttcagaagggtgc 156
| ||||||||| |||||||
Sbjct: 165 catcgagttcaccagggtgc 184
>gb|AU184077.1|AU184077 AU184077 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0912, mRNA sequence
Length = 450
Score = 79.8 bits (40), Expect = 2e-012
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 17 catcactgacatgaactacgagcctatcgctccctaccacttcgacttgagcggcaaggc 76
|||||| |||||||||||| | || | ||||| | |||||||||| | ||||||| |||
Sbjct: 125 catcaccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggc 184
Query: 77 cttcggctccctggcaaagcccgggctcaacgacaagcttcgccactgcggcatcatgga 136
|||||| || || ||||| || |||||||||||||| ||||||| ||||||||| ||
Sbjct: 185 gttcggcaggctcgccaagcctggcctcaacgacaagctgcgccactccggcatcatcga 244
Query: 137 cgtcgagttcagaagggtgc 156
| ||||||||| |||||||
Sbjct: 245 catcgagttcaccagggtgc 264
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,088,420
Number of Sequences: 438736
Number of extensions: 1088420
Number of successful extensions: 6090
Number of sequences better than 0.5: 156
Number of HSP's better than 0.5 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5413
Number of HSP's gapped (non-prelim): 661
length of query: 747
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 726
effective length of database: 2,791,206,460
effective search space: 2026415889960
effective search space used: 2026415889960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)