BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA... 543 e-152
dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA... 543 e-152
ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA 543 e-152
gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (j... 442 e-121
gb|CB664661.1|CB664661 OSJNEd10I06.r OSJNEd Oryza sativa (j... 355 3e-095
gb|CB000870.1|CB000870 S345K_E05 Rice cold stress germinati... 295 3e-077
gb|C25232.1|C25232 C25232 Rice shoot Oryza sativa (japonica... 285 2e-074
gb|CB644828.1|CB644828 OSJNEb06D08.r OSJNEb Oryza sativa (j... 285 2e-074
gb|CB648856.1|CB648856 OSJNEb12H11.r OSJNEb Oryza sativa (j... 285 2e-074
gb|CB670711.1|CB670711 OSJNEe03O24.r OSJNEe Oryza sativa (j... 285 2e-074
gb|CA999018.1|CA999018 S234M_B05 Rice cold stress germinati... 258 6e-066
gb|CB670083.1|CB670083 OSJNEe02P22.r OSJNEe Oryza sativa (j... 252 3e-064
gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 ... 242 3e-061
gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC O... 242 3e-061
gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) c... 242 3e-061
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 242 3e-061
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
gb|AU066038.2|AU066038 AU066038 Rice shoot Oryza sativa (ja... 210 1e-051
gb|AU095892.1|AU095892 AU095892 Rice green shoot Oryza sati... 182 3e-043
gb|CA999085.1|CA999085 S234M_H10 Rice cold stress germinati... 143 2e-031
gb|CB637093.1|CB637093 OSJNEa03E10.r OSJNEa Oryza sativa (j... 135 6e-029
gb|CF325734.1|CF325734 JMT1--04-B01.g1 AtJMT-overexpressing... 117 1e-023
gb|AU093799.1|AU093799 AU093799 Rice panicle at flowering s... 109 3e-021
gb|CB685436.1|CB685436 OSJNEf15N02.f OSJNEf Oryza sativa (j... 88 1e-014
gb|CV722211.1|CV722211 YBH--06-N14.b1 Rice before heading y... 88 1e-014
gb|AU093744.1|AU093744 AU093744 Rice panicle at flowering s... 84 2e-013
gb|AU075536.1|AU075536 AU075536 Rice shoot Oryza sativa (ja... 76 4e-011
dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA... 72 7e-010
gb|AC137547.2| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) c... 72 7e-010
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 72 7e-010
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|CX728909.1|CX728909 OSJNEf15N02.r OSJNEf Oryza sativa (j... 68 1e-008
gb|CV721629.1|CV721629 YBH--04-M10.b1 Rice before heading y... 60 3e-006
gb|CV721775.1|CV721775 YBH--05-E12.b1 Rice before heading y... 60 3e-006
gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (jap... 54 2e-004
gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|XM_473037.1| Oryza sativa (japonica cultivar-group), p... 54 2e-004
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromoso... 54 2e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|C97417.1|C97417 C97417 Rice callus Oryza sativa (japonic... 50 0.003
>dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M04, full
insert sequence
Length = 2397
Score = 543 bits (274), Expect = e-152
Identities = 517/598 (86%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 1356 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 1415
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 1416 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 1475
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
|||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 1476 cattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccacttc 1535
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||| | |||||| || ||||||||||| |||||||||||||| || || || |||||||
Sbjct: 1536 agtatgttgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgcag 1595
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1596 atacacctgggtggtattgtggacctactttctacactacagaagtcctccgcaaatttg 1655
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| |||||||||||||| || |||| || ||||||||| |||||||||||||||||||||
Sbjct: 1656 caaggtcacagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgg 1715
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| |||||||||||||| |||||| ||||||||||||| || || || ||||| || |
Sbjct: 1716 gttttggaaacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatg 1775
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||| | || |||||||| || |||||| |||| ||||
Sbjct: 1776 gtgtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagccaaatccta 1835
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtcc 545
| |||||| | |||||| |||| |||||||| || |||| |||||||| |||||||||||
Sbjct: 1836 atatccttattggagcactggttgctggccctgataggcatgatggcttcaaagatgtcc 1895
Query: 546 gcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
| || |||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 1896 gtacaaactacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 1953
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 2129 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 2187
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 2188 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 2246
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 2247 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 2305
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
||||||||||||||| ||||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 2306 gtgtgaagttctttt-tgtagaaatggaacctttataaaccgttttataggagtgacttt 2364
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 1991 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 2050
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 2051 ccgtcagcttggaaaccat 2069
>dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D09, full
insert sequence
Length = 1963
Score = 543 bits (274), Expect = e-152
Identities = 517/598 (86%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 931 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 990
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 991 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 1050
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
|||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 1051 cattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccacttc 1110
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||| | |||||| || ||||||||||| |||||||||||||| || || || |||||||
Sbjct: 1111 agtatgttgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgcag 1170
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1171 atacacctgggtggtattgtggacctactttctacactacagaagtcctccgcaaatttg 1230
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| |||||||||||||| || |||| || ||||||||| |||||||||||||||||||||
Sbjct: 1231 caaggtcacagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgg 1290
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| |||||||||||||| |||||| ||||||||||||| || || || ||||| || |
Sbjct: 1291 gttttggaaacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatg 1350
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||| | || |||||||| || |||||| |||| ||||
Sbjct: 1351 gtgtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagccaaatccta 1410
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtcc 545
| |||||| | |||||| |||| |||||||| || |||| |||||||| |||||||||||
Sbjct: 1411 atatccttattggagcactggttgctggccctgataggcatgatggcttcaaagatgtcc 1470
Query: 546 gcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
| || |||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 1471 gtacaaactacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 1528
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 1704 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 1762
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 1763 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 1821
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 1822 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 1880
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 1881 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 1939
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 1566 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 1625
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 1626 ccgtcagcttggaaaccat 1644
>ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2313
Score = 543 bits (274), Expect = e-152
Identities = 517/598 (86%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 1255 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 1314
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 1315 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 1374
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
|||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 1375 cattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccacttc 1434
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||| | |||||| || ||||||||||| |||||||||||||| || || || |||||||
Sbjct: 1435 agtatgttgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgcag 1494
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1495 atacacctgggtggtattgtggacctactttctacactacagaagtcctccgcaaatttg 1554
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| |||||||||||||| || |||| || ||||||||| |||||||||||||||||||||
Sbjct: 1555 caaggtcacagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgg 1614
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| |||||||||||||| |||||| ||||||||||||| || || || ||||| || |
Sbjct: 1615 gttttggaaacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatg 1674
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||| | || |||||||| || |||||| |||| ||||
Sbjct: 1675 gtgtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagccaaatccta 1734
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtcc 545
| |||||| | |||||| |||| |||||||| || |||| |||||||| |||||||||||
Sbjct: 1735 atatccttattggagcactggttgctggccctgataggcatgatggcttcaaagatgtcc 1794
Query: 546 gcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
| || |||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 1795 gtacaaactacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 1852
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 2028 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 2086
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 2087 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 2145
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 2146 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 2204
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 2205 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 2263
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 1890 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 1949
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 1950 ccgtcagcttggaaaccat 1968
>gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06D08 5', mRNA sequence
Length = 866
Score = 442 bits (223), Expect = e-121
Identities = 439/511 (85%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 354 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 413
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 414 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 473
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
|||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 474 cattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccacttc 533
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||| | |||||| || ||||||||||| |||||||||||||| || || || |||||||
Sbjct: 534 agtatgttgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgcag 593
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 594 atacacctgggtggtattgtggacctactttctacactacagaagtcctccgcaaatttg 653
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| |||||||||||||| || |||| || ||||||||| |||||||||||||||||||||
Sbjct: 654 caaggtcacagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgg 713
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| |||||||||||||| |||||| ||||||||||||| || || || ||||| || |
Sbjct: 714 gttttggaaacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatg 773
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||| | | |||||||| || |||||| | || ||||
Sbjct: 774 gtgtcaaatatggatgcaaaggaggcttttaatggagggagactaagaagcccaatccta 833
Query: 486 acatccttgtcggagcaatggtggctggccc 516
| |||||| | |||||| |||| ||||||||
Sbjct: 834 atatccttattggagcactggttgctggccc 864
>gb|CB664661.1|CB664661 OSJNEd10I06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd10I06 3', mRNA sequence
Length = 825
Score = 355 bits (179), Expect = 3e-095
Identities = 353/411 (85%)
Strand = Plus / Minus
Query: 193 tgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcc 252
|||||| || ||||||||||| |||||||||||||| || || || |||||||| || ||
Sbjct: 817 tgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgcagatacacc 758
Query: 253 tgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtc 312
||||||||| || ||||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 757 tgggtggtattgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtc 698
Query: 313 acagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgg 372
||||||||| || |||| || ||||||||| ||||||||||||||||||||||||| ||
Sbjct: 697 acagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgg 638
Query: 373 aaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaa 432
|||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 637 aaacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaa 578
Query: 433 gtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcct 492
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| |||||
Sbjct: 577 atatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcct 518
Query: 493 tgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaa 552
| | |||||| |||| |||||||| || |||| |||||||| |||||||||||| || ||
Sbjct: 517 tattggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaa 458
Query: 553 ctacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 457 ctacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 407
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 369 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 310
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 309 ccgtcagcttggaaaccat 291
Score = 69.9 bits (35), Expect = 3e-009
Identities = 177/215 (82%), Gaps = 7/215 (3%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 231 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 173
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagac-atagatc-ggaagc 907
|| |||||||| ||||||||||| |||||| || |||||| ||| ||||| | ||| |
Sbjct: 172 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 114
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 113 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttc-agagctcat 55
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttta 1002
||||||||||| ||||||||||||||| |||||||
Sbjct: 54 gtgtgaagttc-tttttgtagaaatggaaccttta 21
>gb|CB000870.1|CB000870 S345K_E05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 516
Score = 295 bits (149), Expect = 3e-077
Identities = 284/329 (86%)
Strand = Plus / Plus
Query: 275 ttctacaccacagaagtcctccgcaagtttgccaggtcacagctcgactacatccttggc 334
|||||||| ||||||||||||||||| ||||| |||||||||||||| || |||| ||
Sbjct: 6 ttctacactacagaagtcctccgcaaatttgcaaggtcacagctcgattatgtcctaggt 65
Query: 335 aagaacccattgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccct 394
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct: 66 aagaacccactgaagatgagctacgttgtgggttttggaaacaagtaccccaagcgcgct 125
Query: 395 catcacagaggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttac 454
||||||||||| || || || ||||| || || ||||| ||||| ||||||||||| |
Sbjct: 126 catcacagaggtgcatcaatccctcataatggtgtcaaatatggatgcaaaggaggcttt 185
Query: 455 aagtggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggc 514
|| |||||||| || |||||| |||| ||||| |||||| | |||||| |||| ||||||
Sbjct: 186 aaatggagggagactaagaagccaaatcctaatatccttattggagcactggttgctggc 245
Query: 515 cccgacaggcgtgatggctacaaagatgtccgcacgaactacaactacacggagcctact 574
|| || |||| |||||||| |||||||||||| || |||||||| |||||||||||||||
Sbjct: 246 cctgataggcatgatggcttcaaagatgtccgtacaaactacaattacacggagcctact 305
Query: 575 ctcgcagcgaatgctggtctggttgcagc 603
|| ||||| |||||||| ||||| |||||
Sbjct: 306 cttgcagcaaatgctggcctggtggcagc 334
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 372 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 431
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 432 ccgtcagcttggaaaccat 450
>gb|C25232.1|C25232 C25232 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5659_1A, mRNA sequence
Length = 375
Score = 285 bits (144), Expect = 2e-074
Identities = 276/320 (86%)
Strand = Plus / Plus
Query: 284 acagaagtcctccgcaagtttgccaggtcacagctcgactacatccttggcaagaaccca 343
||||||||||||||||| ||||| |||||||||||||| || |||| || |||||||||
Sbjct: 1 acagaagtcctccgcaaatttgcaaggtcacagctcgattatgtcctaggtaagaaccca 60
Query: 344 ttgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacaga 403
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 61 ctgaagatgagctacgttgtgggttttggaaacaagtaccccaagcgcgctcatcacaga 120
Query: 404 ggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagg 463
|| || || || ||||| || || ||||| ||||| ||||||||||| | || ||||||
Sbjct: 121 ggtgcatcaatccctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagg 180
Query: 464 gacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccccgacagg 523
|| || |||||| |||| ||||| |||||| | |||||| |||| |||||||| || |||
Sbjct: 181 gagactaagaagccaaatcctaatatccttattggagcactggttgctggccctgatagg 240
Query: 524 cgtgatggctacaaagatgtccgcacgaactacaactacacggagcctactctcgcagcg 583
| |||||||| |||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 241 catgatggcttcaaagatgtccgtacaaactacaattacacggagcctactcttgcagca 300
Query: 584 aatgctggtctggttgcagc 603
|||||||| ||||| |||||
Sbjct: 301 aatgctggcctggtggcagc 320
>gb|CB644828.1|CB644828 OSJNEb06D08.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06D08 3', mRNA sequence
Length = 811
Score = 285 bits (144), Expect = 2e-074
Identities = 276/320 (86%)
Strand = Plus / Minus
Query: 284 acagaagtcctccgcaagtttgccaggtcacagctcgactacatccttggcaagaaccca 343
||||||||||||||||| ||||| |||||||||||||| || |||| || |||||||||
Sbjct: 811 acagaagtcctccgcaaatttgcaaggtcacagctcgattatgtcctaggtaagaaccca 752
Query: 344 ttgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacaga 403
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 751 ctgaagatgagctacgttgtgggttttggaaacaagtaccccaagcgcgctcatcacaga 692
Query: 404 ggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagg 463
|| || || || ||||| || || ||||| ||||| ||||||||||| | || ||||||
Sbjct: 691 ggtgcatcaatccctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagg 632
Query: 464 gacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccccgacagg 523
|| || |||||| |||| ||||| |||||| | |||||| |||| |||||||| || |||
Sbjct: 631 gagactaagaagccaaatcctaatatccttattggagcactggttgctggccctgatagg 572
Query: 524 cgtgatggctacaaagatgtccgcacgaactacaactacacggagcctactctcgcagcg 583
| |||||||| |||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 571 catgatggcttcaaagatgtccgtacaaactacaattacacggagcctactcttgcagca 512
Query: 584 aatgctggtctggttgcagc 603
|||||||| ||||| |||||
Sbjct: 511 aatgctggcctggtggcagc 492
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 454 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 395
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 394 ccgtcagcttggaaaccat 376
Score = 77.8 bits (39), Expect = 1e-011
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 961 agctcatgtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaag 1020
||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||| ||
Sbjct: 146 agctcatgtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggag 88
Query: 1021 tgacttt 1027
|||||||
Sbjct: 87 tgacttt 81
Score = 60.0 bits (30), Expect = 3e-006
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 316 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 258
Query: 851 tt-ctgtatcaatatgacagatcagtataa 879
|| |||||||| ||||||||||| ||||||
Sbjct: 257 tttctgtatcagtatgacagatcggtataa 228
>gb|CB648856.1|CB648856 OSJNEb12H11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12H11 3', mRNA sequence
Length = 791
Score = 285 bits (144), Expect = 2e-074
Identities = 276/320 (86%)
Strand = Plus / Minus
Query: 284 acagaagtcctccgcaagtttgccaggtcacagctcgactacatccttggcaagaaccca 343
||||||||||||||||| ||||| |||||||||||||| || |||| || |||||||||
Sbjct: 788 acagaagtcctccgcaaatttgcaaggtcacagctcgattatgtcctaggtaagaaccca 729
Query: 344 ttgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacaga 403
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 728 ctgaagatgagctacgttgtgggttttggaaacaagtaccccaagcgcgctcatcacaga 669
Query: 404 ggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagg 463
|| || || || ||||| || || ||||| ||||| ||||||||||| | || ||||||
Sbjct: 668 ggtgcatcaatccctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagg 609
Query: 464 gacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccccgacagg 523
|| || |||||| |||| ||||| |||||| | |||||| |||| |||||||| || |||
Sbjct: 608 gagactaagaagccaaatcctaatatccttattggagcactggttgctggccctgatagg 549
Query: 524 cgtgatggctacaaagatgtccgcacgaactacaactacacggagcctactctcgcagcg 583
| |||||||| |||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 548 catgatggcttcaaagatgtccgtacaaactacaattacacggagcctactcttgcagca 489
Query: 584 aatgctggtctggttgcagc 603
|||||||| ||||| |||||
Sbjct: 488 aatgctggcctggtggcagc 469
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 431 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 372
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 371 ccgtcagcttggaaaccat 353
Score = 63.9 bits (32), Expect = 2e-007
Identities = 174/212 (82%), Gaps = 7/212 (3%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 293 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 235
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagac-atagatc-ggaagc 907
|| |||||||| ||||||||||| |||||| || |||||| ||| ||||| | ||| |
Sbjct: 234 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 176
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 175 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttc-agagctcat 117
Query: 968 gtgtgaagttcttttttgtagaaatggtacct 999
||||||||||| ||||||||||||||| ||||
Sbjct: 116 gtgtgaagttc-tttttgtagaaatggaacct 86
>gb|CB670711.1|CB670711 OSJNEe03O24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03O24 3', mRNA sequence
Length = 779
Score = 285 bits (144), Expect = 2e-074
Identities = 276/320 (86%)
Strand = Plus / Minus
Query: 284 acagaagtcctccgcaagtttgccaggtcacagctcgactacatccttggcaagaaccca 343
||||||||||||||||| ||||| |||||||||||||| || |||| || |||||||||
Sbjct: 775 acagaagtcctccgcaaatttgcaaggtcacagctcgattatgtcctaggtaagaaccca 716
Query: 344 ttgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacaga 403
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 715 ctgaagatgagctacgttgtgggttttggaaacaagtaccccaagcgcgctcatcacaga 656
Query: 404 ggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagg 463
|| || || || ||||| || || ||||| ||||| ||||||||||| | || ||||||
Sbjct: 655 ggtgcatcaatccctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagg 596
Query: 464 gacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccccgacagg 523
|| || |||||| |||| ||||| |||||| | |||||| |||| |||||||| || |||
Sbjct: 595 gagactaagaagccaaatcctaatatccttattggagcactggttgctggccctgatagg 536
Query: 524 cgtgatggctacaaagatgtccgcacgaactacaactacacggagcctactctcgcagcg 583
| |||||||| |||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 535 catgatggcttcaaagatgtccgtacaaactacaattacacggagcctactcttgcagca 476
Query: 584 aatgctggtctggttgcagc 603
|||||||| ||||| |||||
Sbjct: 475 aatgctggcctggtggcagc 456
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| || ||
Sbjct: 418 atcgataagaacaccatcttctttgcagttcctccgatgtttccaactcccccacctcca 359
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 358 ccgtcagcttggaaaccat 340
Score = 63.9 bits (32), Expect = 2e-007
Identities = 196/240 (81%), Gaps = 8/240 (3%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 280 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 222
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| |||| |||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 221 tttctgtatcagtatgccagatcggtataaattcatctgtc-gacaatagaccgggatgt 163
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagct-ca 966
|||||||| | ||| | ||||||||||||| ||||||| |||||| | |||| ||
Sbjct: 162 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattggttcag-agctaca 104
Query: 967 tgtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgactt 1026
||||||||||||||||| |||||||||| |||||| ||| ||||||||| ||||||||
Sbjct: 103 tgtgtgaagttcttttt-gtagaaatggaccctttataaaccgttttataggagtgactt 45
>gb|CA999018.1|CA999018 S234M_B05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 264
Score = 258 bits (130), Expect = 6e-066
Identities = 226/258 (87%)
Strand = Plus / Plus
Query: 64 actgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaa 123
|||||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||
Sbjct: 1 actgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaa 60
Query: 124 ttcattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccact 183
|||||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct: 61 ttcattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccact 120
Query: 184 tcagtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgc 243
|||||| | |||||| || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 121 tcagtatgttgtcaatgcggctttccttgcctctctatacagcgattacctggatgctgc 180
Query: 244 agacacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtt 303
||| || ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||
Sbjct: 181 agatacacctgggtggtattgtggacctactttctacactacagaagtcctccgcaaatt 240
Query: 304 tgccaggtcacagctcga 321
||| ||||||||||||||
Sbjct: 241 tgcaaggtcacagctcga 258
>gb|CB670083.1|CB670083 OSJNEe02P22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02P22 3', mRNA sequence
Length = 787
Score = 252 bits (127), Expect = 3e-064
Identities = 262/307 (85%)
Strand = Plus / Minus
Query: 297 gcaagtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagct 356
|||| ||||| |||||||||||||| || || | || ||||||||| ||||||||||||
Sbjct: 787 gcaaatttgcaaggtcacagctcgattatgtcttaggtaagaacccactgaagatgagct 728
Query: 357 acgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatac 416
||||||||||||| |||||||||||||| |||||| ||||||||||||| || || || |
Sbjct: 727 acgttgtgggttttggaaacaagtaccccaagcgcgctcatcacagaggtgcatcaatcc 668
Query: 417 ctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaagg 476
|||| || || ||||| ||||| ||||||||||| | || |||||||| || ||||||
Sbjct: 667 ctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagc 608
Query: 477 caaaccctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctaca 536
|||| ||||| |||||| | |||||| |||| |||||||| || |||| |||||||| ||
Sbjct: 607 caaatcctaatatccttattggagcactggttgctggccctgataggcatgatggcttca 548
Query: 537 aagatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctgg 596
|||||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct: 547 aagatgtccgtacaaactacaattacacggagcctactcttgcagcaaatgctggcctgg 488
Query: 597 ttgcagc 603
| |||||
Sbjct: 487 tggcagc 481
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 305 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 247
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 246 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 188
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 187 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 129
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 128 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 70
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 443 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 384
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 383 ccgtcagcttggaaaccat 365
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
sequence
Length = 139946
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 56068 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 56009
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 56008 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 55949
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 55948 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 55889
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 55888 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 55829
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 55828 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 55779
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 56330 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 56271
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 56270 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 56211
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 56210 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 56156
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 56543 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 56484
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 56483 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 56424
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 56423 cattcaactttaccaaagg 56405
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 55603 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 55545
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 55544 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 55486
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 55485 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 55427
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 55426 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 55368
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 55741 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 55682
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 55681 ccgtcagcttggaaaccat 55663
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
sequence
Length = 159661
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Plus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 120479 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 120538
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 120539 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 120598
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 120599 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 120658
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 120659 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 120718
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 120719 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 120768
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Plus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 120217 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 120276
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 120277 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 120336
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 120337 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 120391
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 120004 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 120063
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 120064 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 120123
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 120124 cattcaactttaccaaagg 120142
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 120944 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 121002
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 121003 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 121061
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 121062 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 121120
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 121121 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 121179
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 120806 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 120865
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 120866 ccgtcagcttggaaaccat 120884
>gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007878, whole
genome shotgun sequence
Length = 25339
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 5166 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 5107
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 5106 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 5047
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 5046 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 4987
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 4986 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 4927
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 4926 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 4877
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 5428 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 5369
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 5368 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 5309
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 5308 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 5254
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 5641 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 5582
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 5581 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 5522
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 5521 cattcaactttaccaaagg 5503
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 4701 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 4643
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 4642 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 4584
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 4583 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 4525
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 4524 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 4466
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 4839 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 4780
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 4779 ccgtcagcttggaaaccat 4761
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 3196630 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 3196571
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 3196570 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 3196511
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 3196510 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 3196451
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 3196450 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 3196391
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 3196390 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 3196341
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 3196892 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 3196833
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 3196832 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 3196773
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 3196772 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 3196718
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 3197105 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 3197046
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 3197045 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 3196986
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 3196985 cattcaactttaccaaagg 3196967
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 3196165 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 3196107
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 3196106 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 3196048
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 3196047 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 3195989
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 3195988 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 3195930
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 3196303 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 3196244
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 3196243 ccgtcagcttggaaaccat 3196225
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 3584131 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 3584072
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 3584071 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 3584012
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 3584011 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 3583952
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 3583951 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 3583892
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 3583891 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 3583842
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 3584393 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 3584334
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 3584333 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 3584274
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 3584273 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 3584219
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 3584606 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 3584547
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 3584546 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 3584487
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 3584486 cattcaactttaccaaagg 3584468
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 3583666 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 3583608
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 3583607 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 3583549
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 3583548 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 3583490
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 3583489 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 3583431
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 3583804 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 3583745
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 3583744 ccgtcagcttggaaaccat 3583726
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 30850294 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 30850235
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 30850234 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 30850175
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 30850174 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 30850115
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 30850114 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 30850055
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 30850054 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 30850005
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 30850556 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 30850497
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 30850496 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 30850437
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 30850436 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 30850382
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 30850769 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 30850710
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 30850709 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 30850650
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 30850649 cattcaactttaccaaagg 30850631
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 30849829 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 30849771
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 30849770 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 30849712
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 30849711 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 30849653
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 30849652 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 30849594
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 30849967 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 30849908
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 30849907 ccgtcagcttggaaaccat 30849889
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 12366082 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 12366023
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 12366022 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 12365963
Query: 560 tacacgga 567
||||||||
Sbjct: 12365962 tacacgga 12365955
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 12366408 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 12366349
Query: 257 tggta 261
|||||
Sbjct: 12366348 tggta 12366344
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 12367026 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 12366967
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 12366966 tcaggacattccacaatcaaac 12366945
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 29981549 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 29981490
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 29981489 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 29981430
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 29981429 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 29981370
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 29981369 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 29981310
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29981309 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 29981260
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 29981811 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 29981752
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 29981751 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 29981692
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 29981691 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 29981637
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 29982024 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 29981965
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 29981964 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 29981905
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 29981904 cattcaactttaccaaagg 29981886
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 29981084 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 29981026
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 29981025 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 29980967
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 29980966 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 29980908
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 29980907 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 29980849
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 29981222 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 29981163
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 29981162 ccgtcagcttggaaaccat 29981144
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 12074492 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 12074433
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 12074432 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 12074373
Query: 560 tacacgga 567
||||||||
Sbjct: 12074372 tacacgga 12074365
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 12074818 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 12074759
Query: 257 tggta 261
|||||
Sbjct: 12074758 tggta 12074754
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 12075436 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 12075377
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 12075376 tcaggacattccacaatcaaac 12075355
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 242 bits (122), Expect = 3e-061
Identities = 248/290 (85%)
Strand = Plus / Minus
Query: 314 cagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcgga 373
|||||||| || |||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 29890127 cagctcgattatgtcctaggtaagaacccactgaagatgagctacgttgtgggttttgga 29890068
Query: 374 aacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaag 433
||||||||||| |||||| ||||||||||||| || || || ||||| || || |||||
Sbjct: 29890067 aacaagtaccccaagcgcgctcatcacagaggtgcatcaatccctcataatggtgtcaaa 29890008
Query: 434 tatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatcctt 493
||||| ||||||||||| | || |||||||| || |||||| |||| ||||| ||||||
Sbjct: 29890007 tatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaatatcctt 29889948
Query: 494 gtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaac 553
| |||||| |||| |||||||| || |||| |||||||| |||||||||||| || |||
Sbjct: 29889947 attggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaac 29889888
Query: 554 tacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29889887 tacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 29889838
Score = 172 bits (87), Expect = 3e-040
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 142 aggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgc 201
||||||| | ||||| |||||||| ||||||||||||||||||||||| | |||||| ||
Sbjct: 29890389 aggaggaatgatacagctcaaccacggaaggcctcagccacttcagtatgttgtcaatgc 29890330
Query: 202 agctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
||||||||||| |||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 29890329 ggctttccttgcctctctatacagcgattacctggatgctgcagatacacctgggtggta 29890270
Query: 262 ctgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
|| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 29890269 ttgtggacctactttctacactacagaagtcctccgcaaatttgcaaggtcacag 29890215
Score = 141 bits (71), Expect = 9e-031
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 29890602 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 29890543
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 29890542 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 29890483
Query: 126 cattcaacttcactaaagg 144
|||||||||| || |||||
Sbjct: 29890482 cattcaactttaccaaagg 29890464
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 29889662 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 29889604
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 29889603 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 29889545
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 29889544 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 29889486
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 29889485 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 29889427
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 29889800 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 29889741
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 29889740 ccgtcagcttggaaaccat 29889722
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 12077729 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 12077670
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 12077669 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 12077610
Query: 560 tacacgga 567
||||||||
Sbjct: 12077609 tacacgga 12077602
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 12078055 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 12077996
Query: 257 tggta 261
|||||
Sbjct: 12077995 tggta 12077991
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 12078673 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 12078614
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 12078613 tcaggacattccacaatcaaac 12078592
>gb|AU066038.2|AU066038 AU066038 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0028_1A, mRNA sequence
Length = 370
Score = 210 bits (106), Expect = 1e-051
Identities = 194/222 (87%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||| ||||||||| | || ||||||||||| || || ||||||||||||||||
Sbjct: 145 aggttcttctgagcaggttgcggcttttcctaagtcctggatatccttacgaagaaatac 204
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
|||| ||||| ||||||||||| ||||||||||||||||| |||||||| | | |||||
Sbjct: 205 tgagaacatttcacaaccaaacagacaatgttatgtgctcgtatctgccgatgtacaatt 264
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
|||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 265 cattcaactttaccaaaggaggaatgatacagctcaaccacggaaggcctcagccacttc 324
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcg 227
|||| | |||||| || | |||||||| |||||||||||||
Sbjct: 325 agtatgttgtcaatgc-ggtttccttggctctctatacagcg 365
>gb|AU095892.1|AU095892 AU095892 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11425, mRNA sequence
Length = 711
Score = 182 bits (92), Expect = 3e-043
Identities = 210/248 (84%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 357 acgttgtgggtttcggaaacaagtacccgaa-gcgccctcatcacagaggcgcgtcgata 415
||||||||||||| |||||||||| ||| || |||| ||||||||||||| || || ||
Sbjct: 1 acgttgtgggttttggaaacaagtcccccaaagcgcgctcatcacagaggtgcatcaatc 60
Query: 416 cctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaag 475
||||| || || ||||| ||||| ||||||||||| | || |||||||| || ||||||
Sbjct: 61 cctcataatggtgtcaaatatggatgcaaaggaggctttaaatggagggagactaagaag 120
Query: 476 gcaaaccctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctac 535
|||| ||||| |||||| | |||||| |||| |||||||| || |||| |||||||| |
Sbjct: 121 ccaaatcctaatatccttattggagcactggttgctggccctgataggcatgatggcttc 180
Query: 536 aaagatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctg 595
||||||||||| || |||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct: 181 aaagatgtccgtacaaactacaattacacggagcctactcttgcagcaaatgctggcctg 240
Query: 596 gttgcagc 603
|| |||||
Sbjct: 241 gtggcagc 248
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 424 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 482
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 483 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 541
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 542 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 600
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 601 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 659
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 286 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 345
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 346 ccgtcagcttggaaaccat 364
>gb|CA999085.1|CA999085 S234M_H10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 651
Score = 143 bits (72), Expect = 2e-031
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 428 gtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaac 487
||||| ||||| ||||||||||| | || |||||||| || |||||| |||| |||||
Sbjct: 29 gtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcctaat 88
Query: 488 atccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgc 547
|||||| | |||||| |||| |||||||| || |||| |||||||| ||||||||||||
Sbjct: 89 atccttattggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgt 148
Query: 548 acgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| |||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 149 acaaactacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 204
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 380 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 438
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 439 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 497
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 498 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 556
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 557 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 615
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 242 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 301
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 302 ccgtcagcttggaaaccat 320
>gb|CB637093.1|CB637093 OSJNEa03E10.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03E10 3', mRNA sequence
Length = 632
Score = 135 bits (68), Expect = 6e-029
Identities = 149/176 (84%)
Strand = Plus / Minus
Query: 428 gtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaac 487
||||| ||||| ||||||||||| | || |||||||| || |||||| |||| | |||
Sbjct: 608 gtcaaatatggatgcaaaggaggctttaaatggagggagactaagaagccaaatcttaat 549
Query: 488 atccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgc 547
|||||| | |||||| |||| |||||||| || |||| |||||||| ||||||||||||
Sbjct: 548 atccttattggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgt 489
Query: 548 acgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| |||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 488 acaaactacaattacacggagcctactcttgcagcaaatgctggcctggtggcagc 433
Score = 79.8 bits (40), Expect = 3e-012
Identities = 194/236 (82%), Gaps = 7/236 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 258 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 200
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 199 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 141
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 140 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 82
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtga 1023
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||
Sbjct: 81 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtga 27
Score = 73.8 bits (37), Expect = 2e-010
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgccccc 696
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 395 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactccccc 343
>gb|CF325734.1|CF325734 JMT1--04-B01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-B01, mRNA sequence
Length = 353
Score = 117 bits (59), Expect = 1e-023
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 477 caaaccctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctaca 536
|||| ||||| |||||| | |||||| |||| |||||||| || |||| |||||||| ||
Sbjct: 11 caaatcctaatatccttattggagcactggttgctggccctgataggcatgatggcttca 70
Query: 537 aagatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctgg 596
|||||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct: 71 aagatgtccgtacaaactacaattacacggagcctactcttgcagcaaatgctggcctgg 130
Query: 597 ttgcagc 603
| |||||
Sbjct: 131 tggcagc 137
Score = 79.8 bits (40), Expect = 3e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || |
Sbjct: 175 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctnca 234
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 235 ccgtcagcttggaaaccat 253
>gb|AU093799.1|AU093799 AU093799 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0539, mRNA sequence
Length = 545
Score = 109 bits (55), Expect = 3e-021
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
|||||| |||| |||||||| || |||| |||||||| |||||||||||| || ||||||
Sbjct: 4 ggagcactggttgctggccctgataggcatgatggcttcaaagatgtccgtacaaactac 63
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 64 aattacacggagcctactcttgcagcaaatgctggcctggtggcagc 110
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 286 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 344
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 345 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 403
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 404 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 462
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 463 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 521
Score = 85.7 bits (43), Expect = 5e-014
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccg 703
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||
Sbjct: 148 atcgataagaacaccatcttctctgcagttcctccgatgtttccaactcccccacctcca 207
Query: 704 ccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 208 ccgtcagcttggaaaccat 226
>gb|CB685436.1|CB685436 OSJNEf15N02.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15N02 5', mRNA sequence
Length = 343
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 67 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 125
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 126 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 184
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 185 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 243
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 244 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 302
>gb|CV722211.1|CV722211 YBH--06-N14.b1 Rice before heading yeast two hybrid lambda phage cDNA
library (YBH) Oryza sativa (japonica cultivar-group) cDNA
clone YBH--06-N14, mRNA sequence
Length = 355
Score = 87.7 bits (44), Expect = 1e-014
Identities = 198/240 (82%), Gaps = 7/240 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 252 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 194
Query: 851 tt-ctgtatcaatatgacagatcagtataagatcctctgtcagaca-tagatcggaa-gc 907
|| |||||||| ||||||||||| |||||| || |||||| |||| |||| ||| | |
Sbjct: 193 tttctgtatcagtatgacagatcggtataaattcatctgtc-gacaatagaccgggatgt 135
Query: 908 tgtgtgcatcgcgtggagctaatttttgggggtcttgttgctattggcactccagctcat 967
|||||||| | ||| | ||||||||||||| ||||||| |||| | | |||||||
Sbjct: 134 tgtgtgcaccttgtgaaactaatttttggggtccttgttgttattcgttcag-agctcat 76
Query: 968 gtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
|||||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 75 gtgtgaagttcttttt-gtagaaatggaacctttataaaccgttttataggagtgacttt 17
>gb|AU093744.1|AU093744 AU093744 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0084, mRNA sequence
Length = 409
Score = 83.8 bits (42), Expect = 2e-013
Identities = 177/214 (82%), Gaps = 6/214 (2%)
Strand = Plus / Plus
Query: 817 gaaagctgacagcataagtttatagagcttctattt-ctgtatcaatatgacagatcagt 875
|||||| |||| |||||| ||| ||||| ||||||| |||||||| ||||||||||| ||
Sbjct: 157 gaaagcagacaacataagcttacagagcctctattttctgtatcagtatgacagatcggt 216
Query: 876 ataagatcctctgtcagaca-tagatcggaa-gctgtgtgcatcgcgtggagctaatttt 933
|||| || |||||| |||| |||| ||| | | |||||||| | ||| | ||||||||
Sbjct: 217 ataaattcatctgtc-gacaatagaccgggatgttgtgtgcaccttgtgaaactaatttt 275
Query: 934 tgggggtcttgttgctattggcactccagctcatgtgtgaagttcttttttgtagaaatg 993
||||| ||||||| |||| | | ||||||||||||||||||||||| |||||||||
Sbjct: 276 tggggtccttgttgttattcgttcag-agctcatgtgtgaagttcttttt-gtagaaatg 333
Query: 994 gtacctttacaaattgttttatagaagtgacttt 1027
| ||||||| ||| ||||||||| |||||||||
Sbjct: 334 gaacctttataaaccgttttataggagtgacttt 367
Score = 46.1 bits (23), Expect = 0.039
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 660 tcttctctgcgattcctccgatgttcccaacgcccccgccgccgccatcagcatggaaac 719
|||||||||| ||||||||||||| |||| ||||| || || || ||||| |||||||
Sbjct: 7 tcttctctgcagttcctccgatgtttccaagtcccccacctccaccgtcagcttggaaac 66
Query: 720 cat 722
|||
Sbjct: 67 cat 69
>gb|AU075536.1|AU075536 AU075536 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S0028_2Z, mRNA sequence
Length = 418
Score = 75.8 bits (38), Expect = 4e-011
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 962 gctcatgtgtgaagttcttttttgtagaaatggtacctttacaaattgttttatagaagt 1021
||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||| |||
Sbjct: 324 gctcatgtgtgaagttctttt-tgtagaaatggaacctttataaaccgttttataggagt 382
Query: 1022 gacttt 1027
||||||
Sbjct: 383 gacttt 388
Score = 71.9 bits (36), Expect = 7e-010
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 644 atcgataagaacaccatcttctctgc-gattcctccgatgttcccaacgcccccgccgcc 702
|||||||||||||||||||||||||| | | ||||||||||| ||||| ||||| || ||
Sbjct: 14 atcgataagaacaccatcttctctgcagttccctccgatgtttccaactcccccacctcc 73
Query: 703 gccatcagcatggaaaccat 722
|| ||||| ||||||||||
Sbjct: 74 accgtcagcttggaaaccat 93
Score = 54.0 bits (27), Expect = 2e-004
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 153 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 211
Query: 851 tt-ctgtatcaatatgacagatcagtataa 879
|| |||||||| ||||||||| | ||||||
Sbjct: 212 tttctgtatcagtatgacagancggtataa 241
>dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K04, full
insert sequence
Length = 2189
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 1693 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 1752
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 1753 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 1812
Query: 560 tacacgga 567
||||||||
Sbjct: 1813 tacacgga 1820
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 1450 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 1509
Query: 257 tggta 261
|||||
Sbjct: 1510 tggta 1514
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 1259 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 1318
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 1319 tcaggacattccacaatcaaac 1340
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0052J20, complete sequence
Length = 144969
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 98309 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 98250
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 98249 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 98190
Query: 560 tacacgga 567
||||||||
Sbjct: 98189 tacacgga 98182
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 98635 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 98576
Query: 257 tggta 261
|||||
Sbjct: 98575 tggta 98571
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 99253 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 99194
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 99193 tcaggacattccacaatcaaac 99172
>gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006539, whole
genome shotgun sequence
Length = 40585
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 6511 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 6452
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 6451 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 6392
Query: 560 tacacgga 567
||||||||
Sbjct: 6391 tacacgga 6384
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 6837 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 6778
Query: 257 tggta 261
|||||
Sbjct: 6777 tggta 6773
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 7455 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 7396
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 7395 tcaggacattccacaatcaaac 7374
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 3419989 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 3419930
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 3419929 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 3419870
Query: 560 tacacgga 567
||||||||
Sbjct: 3419869 tacacgga 3419862
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 3420315 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 3420256
Query: 257 tggta 261
|||||
Sbjct: 3420255 tggta 3420251
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 3420933 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 3420874
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 3420873 tcaggacattccacaatcaaac 3420852
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 71.9 bits (36), Expect = 7e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||||||||||||| | ||||||
Sbjct: 12173720 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaaccctaacatcatcgtcgga 12173661
Query: 500 gcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaac 559
|| ||||| |||||||| || | | || |||| ||| ||||| |||| ||| ||||||
Sbjct: 12173660 gcgatggtagctggccctgatcgccacgacggcttcaaggatgttcgcaagaattacaac 12173601
Query: 560 tacacgga 567
||||||||
Sbjct: 12173600 tacacgga 12173593
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
||||| || |||||||||||| | ||| | ||||||||||| |||||||| || |||||
Sbjct: 12174046 aacgctgcattccttgcttctttgtacggtgactatcttgaggctgcagatacccctggc 12173987
Query: 257 tggta 261
|||||
Sbjct: 12173986 tggta 12173982
Score = 44.1 bits (22), Expect = 0.16
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||| | ||| |||| || |||||| ||||||| || || || || ||||| || |
Sbjct: 12174664 aggttcttttgagccggttaaggctcttcttaagtcctggttatccatatgaagagatcc 12174605
Query: 66 tgaggacattccacaaccaaac 87
| |||||||||||||| |||||
Sbjct: 12174604 tcaggacattccacaatcaaac 12174583
>gb|CX728909.1|CX728909 OSJNEf15N02.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15N02 3', mRNA sequence
Length = 363
Score = 67.9 bits (34), Expect = 1e-008
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| ||||||| | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 297 tttggtacagcaaaggccacatacag-aaagcagacaacataagcttacagagcctctat 239
Query: 851 tt-ctgtatcaatatgacagatcagtataa 879
|| |||||||| ||||||||||| ||||||
Sbjct: 238 tttctgtatcagtatgacagatcggtataa 209
Score = 56.0 bits (28), Expect = 4e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 980 tttttgtagaaatggtacctttacaaattgttttatagaagtgacttt 1027
||||||||||||||| ||||||| ||| ||||||||| |||||||||
Sbjct: 109 tttttgtagaaatggaacctttataaaccgttttataggagtgacttt 62
>gb|CV721629.1|CV721629 YBH--04-M10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-M10, mRNA sequence
Length = 216
Score = 60.0 bits (30), Expect = 3e-006
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 164 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 106
Query: 851 tt-ctgtatcaatatgacagatcagtataa 879
|| |||||||| ||||||||||| ||||||
Sbjct: 105 tttctgtatcagtatgacagatcggtataa 76
>gb|CV721775.1|CV721775 YBH--05-E12.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--05-E12, mRNA sequence
Length = 436
Score = 60.0 bits (30), Expect = 3e-006
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 791 tttggtacagcgaaggccagagacaggaaagctgacagcataagtttatagagcttctat 850
||||||||||| |||| || | |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 26 tttggtacagcaaaggacacatacag-aaagcagacaacataagcttacagagcctctat 84
Query: 851 tt-ctgtatcaatatgacagatcagtataa 879
|| |||||||| ||||||||||| ||||||
Sbjct: 85 tttctgtatcagtatgacagatcggtataa 114
>gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0330, mRNA sequence
Length = 450
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 224 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 283
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 284 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 343
Query: 466 cac 468
|||
Sbjct: 344 cac 346
>gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010055, whole
genome shotgun sequence
Length = 22746
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 12688 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 12747
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 12748 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 12807
Query: 466 cac 468
|||
Sbjct: 12808 cac 12810
>ref|XM_473037.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1872
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 1488 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 1547
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 1548 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 1607
Query: 466 cac 468
|||
Sbjct: 1608 cac 1610
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 2443912 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 2443853
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 2443852 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 2443793
Query: 466 cac 468
|||
Sbjct: 2443792 cac 2443790
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 2759244 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 2759185
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 2759184 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 2759125
Query: 466 cac 468
|||
Sbjct: 2759124 cac 2759122
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 21903343 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 21903284
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 21903283 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 21903224
Query: 466 cac 468
|||
Sbjct: 21903223 cac 21903221
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
complete sequence
Length = 170765
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 101605 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 101546
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 101545 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 101486
Query: 466 cac 468
|||
Sbjct: 101485 cac 101483
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 54.0 bits (27), Expect = 2e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 346 gaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgccctcatcacagagg 405
||||||||||||||| ||||| | ||| || ||||||||| ||| | || ||||| ||
Sbjct: 24839889 gaagatgagctacgtggtggggtacggcaagaagtacccgcggcggctgcaccacagggg 24839830
Query: 406 cgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggaggga 465
||||||| || ||||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 24839829 ggcgtcgacgccgcacaacggcatcaagtactcgtgcaccggcgggtacaagtggaggga 24839770
Query: 466 cac 468
|||
Sbjct: 24839769 cac 24839767
>gb|C97417.1|C97417 C97417 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60143_8Z, mRNA sequence
Length = 712
Score = 50.1 bits (25), Expect = 0.003
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 440 tgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcgga 499
||||||||||||| |||||||| || || ||||| |||| ||||||||| | ||||||
Sbjct: 207 tgcaaaggaggttggaagtggagagaaaccaagaaaccaaa-cctaacatcatcgtcgga 265
Query: 500 gcaatggtggctggccc 516
|| ||||| ||||||||
Sbjct: 266 gcgatggtagctggccc 282
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,888,011
Number of Sequences: 438736
Number of extensions: 1888011
Number of successful extensions: 14133
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13596
Number of HSP's gapped (non-prelim): 503
length of query: 1078
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1057
effective length of database: 2,791,206,460
effective search space: 2950305228220
effective search space used: 2950305228220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)