BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA 466 e-128
dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA... 458 e-126
gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing t... 230 1e-057
dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA... 230 1e-057
dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA... 230 1e-057
gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid c... 228 5e-057
gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (ja... 220 1e-054
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) c... 178 4e-042
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 178 4e-042
dbj|AP005733.3| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 178 4e-042
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 178 4e-042
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (jap... 167 2e-038
gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (ja... 143 2e-031
gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (... 133 2e-028
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) c... 133 2e-028
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 133 2e-028
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature lea... 103 2e-019
dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativ... 96 5e-017
gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japo... 94 2e-016
gb|AC109594.2| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|AC109365.2| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 80 3e-012
gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|AU031566.1|AU031566 AU031566 Rice cDNA from immature lea... 56 4e-005
gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
ref|NM_191863.1| Oryza sativa (japonica cultivar-group), p... 56 4e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 56 4e-005
dbj|AP002899.2| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AP003343.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
>ref|XM_467785.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 932
Score = 466 bits (235), Expect = e-128
Identities = 487/571 (85%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 717 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 658
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 657 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 598
Query: 451 cttaaacttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctg 510
||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||| |||||
Sbjct: 597 cttaaacttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctg 538
Query: 511 tgcagctgaaattacatcatcaggtctacttgattcatccttctttggaatataccagat 570
|||||||| || |||||||| |||||| ||| |||||||| |||| || ||||||||
Sbjct: 537 cgcagctgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagat 478
Query: 571 gtttacaacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagc 630
|| || | |||||| || |||| ||||||||||||||| || ||||| |||||||||||
Sbjct: 477 attaactatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagc 418
Query: 631 tccattgaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaa 690
|||||||| | ||||| || |||||||||||||| |||| || ||||||||||| ||
Sbjct: 417 accattgaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataa 358
Query: 691 aggaagccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacag 750
|||||||||||| |||||||||| ||| |||||||| |||||||||||||| |||||||
Sbjct: 357 aggaagccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaa 298
Query: 751 cacccagtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaac 810
||||||||| |||||||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct: 297 cacccagtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaac 238
Query: 811 agaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgtt 870
||| ||||| || ||||| ||||||||||| | ||||||||| || ||||||| ||| ||
Sbjct: 237 agatgcatatagtggataagcaagtgaaactataggccccgcaagaacatccaagttctt 178
Query: 871 gaccaagaccttgaggaaagatccggatccg 901
|||| ||||||||||||||||||||||||
Sbjct: 177 taccaccaccttgaggaaagatccggatccg 147
>dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full
insert sequence
Length = 932
Score = 458 bits (231), Expect = e-126
Identities = 486/571 (85%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | |||||||||| || ||| | ||||| ||||| | ||||||||
Sbjct: 717 ctagtaccgataattttgattgaagaagggattctcatcccttgcttctgcttctagttc 658
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 657 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 598
Query: 451 cttaaacttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctg 510
||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||| |||||
Sbjct: 597 cttaaacttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctg 538
Query: 511 tgcagctgaaattacatcatcaggtctacttgattcatccttctttggaatataccagat 570
|||||||| || |||||||| |||||| ||| |||||||| |||| || ||||||||
Sbjct: 537 cgcagctgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagat 478
Query: 571 gtttacaacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagc 630
|| || | |||||| || |||| ||||||||||||||| || ||||| |||||||||||
Sbjct: 477 attaactatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagc 418
Query: 631 tccattgaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaa 690
|||||||| | ||||| || |||||||||||||| |||| || ||||||||||| ||
Sbjct: 417 accattgaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataa 358
Query: 691 aggaagccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacag 750
|||||||||||| |||||||||| ||| |||||||| |||||||||||||| |||||||
Sbjct: 357 aggaagccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaa 298
Query: 751 cacccagtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaac 810
||||||||| |||||||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct: 297 cacccagtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaac 238
Query: 811 agaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgtt 870
||| ||||| || ||||| ||||||||||| | ||||||||| || ||||||| ||| ||
Sbjct: 237 agatgcatatagtggataagcaagtgaaactataggccccgcaagaacatccaagttctt 178
Query: 871 gaccaagaccttgaggaaagatccggatccg 901
|||| ||||||||||||||||||||||||
Sbjct: 177 taccaccaccttgaggaaagatccggatccg 147
>gb|CF310811.1|CF310811 ABF--05-K23.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-K23, mRNA sequence
Length = 638
Score = 230 bits (116), Expect = 1e-057
Identities = 284/340 (83%)
Strand = Plus / Minus
Query: 555 ttggaatataccagatgtttacaacttgctgatttacaatcattggcctcacaaaatgct 614
|||||| |||||||| ||||| | ||| |||| |||| |||||||| |||||| || |
Sbjct: 491 ttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtgat 432
Query: 615 catatacatgtgcagctccattgaactgtggcaatactaaccagcaattgaagaacagct 674
|||| |||| ||||| |||| ||| || || || |||||||| |||||||||| ||
Sbjct: 431 cataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaact 372
Query: 675 ttgcataagaccagaaaggaagccattcgagtaccggagcaaaggtgagctcgaatagag 734
||||||| ||||| |||||||||||||| | ||| |||||||| || ||||| || | ||
Sbjct: 371 ttgcataggaccaaaaaggaagccattcaattactggagcaaaagtaagctcaaacaaag 312
Query: 735 tgataaatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttg 794
||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 311 tgataaacgagtacagcacccagtaagtgagccattgctgatcatcaacaggagattttg 252
Query: 795 tttcaattgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcga 854
|||| |||||||| ||||||||||| | ||||| ||||||||||| || ||||| ||||
Sbjct: 251 tttctattgctctcacagaggcatataatggataagcaagtgaaactaatggcccggcga 192
Query: 855 ggacatccatgttgttgaccaagaccttgaggaaagatcc 894
|||| || | ||||||| ||| | |||||||||||||||
Sbjct: 191 ggacgtcgaagttgttggccagcagcttgaggaaagatcc 152
>dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A03, full
insert sequence
Length = 1072
Score = 230 bits (116), Expect = 1e-057
Identities = 284/340 (83%)
Strand = Plus / Minus
Query: 555 ttggaatataccagatgtttacaacttgctgatttacaatcattggcctcacaaaatgct 614
|||||| |||||||| ||||| | ||| |||| |||| |||||||| |||||| || |
Sbjct: 462 ttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtgat 403
Query: 615 catatacatgtgcagctccattgaactgtggcaatactaaccagcaattgaagaacagct 674
|||| |||| ||||| |||| ||| || || || |||||||| |||||||||| ||
Sbjct: 402 cataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaact 343
Query: 675 ttgcataagaccagaaaggaagccattcgagtaccggagcaaaggtgagctcgaatagag 734
||||||| ||||| |||||||||||||| | ||| |||||||| || ||||| || | ||
Sbjct: 342 ttgcataggaccaaaaaggaagccattcaattactggagcaaaagtaagctcaaacaaag 283
Query: 735 tgataaatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttg 794
||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 282 tgataaacgagtacagcacccagtaagtgagccattgctgatcatcaacaggagattttg 223
Query: 795 tttcaattgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcga 854
|||| |||||||| ||||||||||| | ||||| ||||||||||| || ||||| ||||
Sbjct: 222 tttctattgctctcacagaggcatataatggataagcaagtgaaactaatggcccggcga 163
Query: 855 ggacatccatgttgttgaccaagaccttgaggaaagatcc 894
|||| || | ||||||| ||| | |||||||||||||||
Sbjct: 162 ggacgtcgaagttgttggccagcagcttgaggaaagatcc 123
>dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106M05, full
insert sequence
Length = 1084
Score = 230 bits (116), Expect = 1e-057
Identities = 284/340 (83%)
Strand = Plus / Minus
Query: 555 ttggaatataccagatgtttacaacttgctgatttacaatcattggcctcacaaaatgct 614
|||||| |||||||| ||||| | ||| |||| |||| |||||||| |||||| || |
Sbjct: 519 ttggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtgat 460
Query: 615 catatacatgtgcagctccattgaactgtggcaatactaaccagcaattgaagaacagct 674
|||| |||| ||||| |||| ||| || || || |||||||| |||||||||| ||
Sbjct: 459 cataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaact 400
Query: 675 ttgcataagaccagaaaggaagccattcgagtaccggagcaaaggtgagctcgaatagag 734
||||||| ||||| |||||||||||||| | ||| |||||||| || ||||| || | ||
Sbjct: 399 ttgcataggaccaaaaaggaagccattcaattactggagcaaaagtaagctcaaacaaag 340
Query: 735 tgataaatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttg 794
||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 339 tgataaacgagtacagcacccagtaagtgagccattgctgatcatcaacaggagattttg 280
Query: 795 tttcaattgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcga 854
|||| |||||||| ||||||||||| | ||||| ||||||||||| || ||||| ||||
Sbjct: 279 tttctattgctctcacagaggcatataatggataagcaagtgaaactaatggcccggcga 220
Query: 855 ggacatccatgttgttgaccaagaccttgaggaaagatcc 894
|||| || | ||||||| ||| | |||||||||||||||
Sbjct: 219 ggacgtcgaagttgttggccagcagcttgaggaaagatcc 180
>gb|CF293670.1|CF293670 30DGS--02-O24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-O24, mRNA sequence
Length = 522
Score = 228 bits (115), Expect = 5e-057
Identities = 283/339 (83%)
Strand = Plus / Minus
Query: 556 tggaatataccagatgtttacaacttgctgatttacaatcattggcctcacaaaatgctc 615
||||| |||||||| ||||| | ||| |||| |||| |||||||| |||||| || ||
Sbjct: 522 tggaacataccagacatttactatttgacgattcacaaacattggccgcacaaagtgatc 463
Query: 616 atatacatgtgcagctccattgaactgtggcaatactaaccagcaattgaagaacagctt 675
||| |||| ||||| |||| ||| || || || |||||||| |||||||||| |||
Sbjct: 462 ataaacataagcagcaccatggaagcaaggtaagaccaaccagcagttgaagaacaactt 403
Query: 676 tgcataagaccagaaaggaagccattcgagtaccggagcaaaggtgagctcgaatagagt 735
|||||| ||||| |||||||||||||| | ||| |||||||| || ||||| || | |||
Sbjct: 402 tgcataggaccaaaaaggaagccattcaattactggagcaaaagtaagctcaaacaaagt 343
Query: 736 gataaatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgt 795
|||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 342 gataaacgagtacagcacccagtaagtgagccattgctgatcatcaacaggagattttgt 283
Query: 796 ttcaattgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgag 855
||| |||||||| ||||||||||| | ||||| ||||||||||| || ||||| |||||
Sbjct: 282 ttctattgctctcacagaggcatataatggataagcaagtgaaactaatggcccggcgag 223
Query: 856 gacatccatgttgttgaccaagaccttgaggaaagatcc 894
||| || | ||||||| ||| | |||||||||||||||
Sbjct: 222 gacgtcgaagttgttggccagcagcttgaggaaagatcc 184
>gb|C28395.1|C28395 C28395 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60938_1A, mRNA sequence
Length = 463
Score = 220 bits (111), Expect = 1e-054
Identities = 209/242 (86%)
Strand = Plus / Minus
Query: 653 aaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtaccgga 712
|||||||| |||||||||| ||||||||| ||||| |||||||||||||| | ||| |||
Sbjct: 380 aaccagcagttgaagaacaactttgcataggaccaaaaaggaagccattcaattactgga 321
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| || ||||| || | ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 320 gcaaaagtaagctcaaacaaagtnataaacgagtacagcacccagtaagtgagccattgc 261
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgca 832
|||||||| |||| |||||||||||| |||||||| ||||||||||| | ||||| |||
Sbjct: 260 tgatcatcaacaggagattttgtttctattgctctcacagaggcatataatggataagca 201
Query: 833 agtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaagat 892
|||||||| || ||||| |||||||| || | ||||||| ||| | |||||||||||||
Sbjct: 200 agtgaaactaatggcccggcgaggacgtcgaagttgttggccagcagcttgaggaaagat 141
Query: 893 cc 894
||
Sbjct: 140 cc 139
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078N11
Length = 155168
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 62889 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 62830
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 62829 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 62770
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 62769 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 62710
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 62709 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 62650
Query: 697 cc 698
||
Sbjct: 62649 cc 62648
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 62360 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 62301
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 62300 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 62241
Query: 817 ata 819
|||
Sbjct: 62240 ata 62238
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 63177 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 63118
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 63117 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 63058
Query: 451 cttaaact 458
||||||||
Sbjct: 63057 cttaaact 63050
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 61286 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 61232
>gb|AACV01005417.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005417, whole
genome shotgun sequence
Length = 20497
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 14727 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 14668
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 14667 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 14608
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 14607 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 14548
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 14547 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 14488
Query: 697 cc 698
||
Sbjct: 14487 cc 14486
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 14198 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 14139
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 14138 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 14079
Query: 817 ata 819
|||
Sbjct: 14078 ata 14076
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 15015 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 14956
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 14955 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 14896
Query: 451 cttaaact 458
||||||||
Sbjct: 14895 cttaaact 14888
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 13124 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 13070
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 6592491 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 6592432
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 6592431 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 6592372
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 6592371 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 6592312
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 6592311 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 6592252
Query: 697 cc 698
||
Sbjct: 6592251 cc 6592250
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 6591962 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 6591903
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 6591902 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 6591843
Query: 817 ata 819
|||
Sbjct: 6591842 ata 6591840
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 6592779 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 6592720
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 6592719 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 6592660
Query: 451 cttaaact 458
||||||||
Sbjct: 6592659 cttaaact 6592652
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 6590888 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 6590834
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0024K03
Length = 119796
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 110066 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 110007
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 110006 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 109947
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 109946 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 109887
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 109886 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 109827
Query: 697 cc 698
||
Sbjct: 109826 cc 109825
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 109537 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 109478
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 109477 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 109418
Query: 817 ata 819
|||
Sbjct: 109417 ata 109415
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 110354 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 110295
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 110294 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 110235
Query: 451 cttaaact 458
||||||||
Sbjct: 110234 cttaaact 110227
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 108463 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 108409
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 17987652 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 17987593
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 17987592 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 17987533
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 17987532 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 17987473
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 17987472 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 17987413
Query: 697 cc 698
||
Sbjct: 17987412 cc 17987411
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 17987123 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 17987064
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 17987063 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 17987004
Query: 817 ata 819
|||
Sbjct: 17987003 ata 17987001
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 17987940 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 17987881
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 17987880 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 17987821
Query: 451 cttaaact 458
||||||||
Sbjct: 17987820 cttaaact 17987813
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 17986049 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 17985995
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 31440716 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 31440657
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 31440656 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 31440597
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 31440596 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 31440537
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 31440536 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 31440477
Query: 697 cc 698
||
Sbjct: 31440476 cc 31440475
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 31440187 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 31440128
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 31440127 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 31440068
Query: 817 ata 819
|||
Sbjct: 31440067 ata 31440065
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 31441004 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 31440945
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 31440944 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 31440885
Query: 451 cttaaact 458
||||||||
Sbjct: 31440884 cttaaact 31440877
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 31439113 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 31439059
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 178 bits (90), Expect = 4e-042
Identities = 204/242 (84%)
Strand = Plus / Minus
Query: 457 cttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagc 516
||||||||| ||| | ||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 31427492 cttgttaaccagactttcaaacgctcttgatccattttgttcaatgtatctctgcgcagc 31427433
Query: 517 tgaaattacatcatcaggtctacttgattcatccttctttggaatataccagatgtttac 576
||| || |||||||| |||||| ||| |||||||| |||| || |||||||| || ||
Sbjct: 31427432 tgatatcacatcatcgggtctatctgactcatcctttcttgggatgtaccagatattaac 31427373
Query: 577 aacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccatt 636
| |||||| || |||| ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 31427372 tatttgctggttgacaaccattggcctcacaaagtgttcatagacatgtgcagcaccatt 31427313
Query: 637 gaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaag 696
||| | ||||| || |||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 31427312 gaagtagggcaagaccaaccagcaattgaaaaacaatttagcataagaccataaaggaag 31427253
Query: 697 cc 698
||
Sbjct: 31427252 cc 31427251
Score = 149 bits (75), Expect = 4e-033
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| |||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 31426963 ccattcaagtaccggagaaaaagtgagctcaaatagagtgataaacgagtacaacaccca 31426904
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 31426903 gtatgtgagccattgctgatcatctacagcagattttgtttctatcgctcgaacagatgc 31426844
Query: 817 ata 819
|||
Sbjct: 31426843 ata 31426841
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 331 ctagtactgatattctggattgaagaaagggttcacttccctcgcttcagattctagttg 390
||||||| |||| | | ||||||||||||| ||| | ||||| ||||| | ||||||||
Sbjct: 31427780 ctagtaccgataattttgattgaagaaaggattctcatcccttgcttctgcttctagttc 31427721
Query: 391 aatcctggccctcctttcaacctctacctcctccagaattgagcgccttgggttcgaact 450
| | |||| || |||||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct: 31427720 agccttggctcttctttcagcctctacctcctccagaatggagcgccttgtgtttgaagc 31427661
Query: 451 cttaaact 458
||||||||
Sbjct: 31427660 cttaaact 31427653
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 847 ccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
|||||| || ||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct: 31425889 ccccgcaagaacatccaagttctttaccaccaccttgaggaaagatccggatccg 31425835
>gb|D22408.1|D22408 RICC10978A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10978_1A, mRNA sequence
Length = 346
Score = 167 bits (84), Expect = 2e-038
Identities = 175/204 (85%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 692 ggaagccattcgagtaccggagcaaaggtgagctcgaataga-gtgataaatgagtacag 750
||||||||||| | ||| |||||||| || ||||| || | | |||||||| ||||||||
Sbjct: 346 ggaagccattcaattactggagcaaaagtaagctcaaacaaaagtgataaacgagtacag 287
Query: 751 cacccagtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaac 810
||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||
Sbjct: 286 cacccagtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcac 227
Query: 811 agaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgtt 870
||||||||| | ||||| ||||||||||| || ||||| |||||||| || | ||||||
Sbjct: 226 agaggcatataatggataagcaagtgaaactaatggcccggcgaggacgtcgaagttgtt 167
Query: 871 gaccaagaccttgaggaaagatcc 894
| ||| | |||||||||||||||
Sbjct: 166 ggccagcagcttgaggaaagatcc 143
>gb|C27438.1|C27438 C27438 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51873_1A, mRNA sequence
Length = 445
Score = 143 bits (72), Expect = 2e-031
Identities = 194/230 (84%), Gaps = 5/230 (2%)
Strand = Plus / Minus
Query: 677 gcataagacca-gaaaggaagccattcgagtaccggagcaaag-gtgagctcgaa-taga 733
||||||||||| ||||||||||| || ||||||| || ||| ||||||| || ||||
Sbjct: 427 gcataagaccatnaaaggaagccaatcaagtaccgnagaaaaaagtgagctnaaaataga 368
Query: 734 gtgataaat-gagtacagcacccagtacgtgagccattgctgatcatccacagcagattt 792
|||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 367 gtgataaaacgagtacaacacccagtatgtgagccattgctgatcatctacagcagattt 308
Query: 793 tgtttcaattgctc-taacagaggcatacagaggatacgcaagtgaaaccaaaggccccg 851
|||||| || |||| || ||| ||||| || ||||| ||||||||||| | ||||||||
Sbjct: 307 tgtttctatcgctcgaaanagatgcatatagtggataagcaagtgaaactataggccccg 248
Query: 852 cgaggacatccatgttgttgaccaagaccttgaggaaagatccggatccg 901
| || ||||||| ||| || |||| |||||||||||||| ||||| |||
Sbjct: 247 caagaacatccaagttctttaccaccaccttgaggaaaganccgganccg 198
>gb|AQ865563.1|AQ865563 nbeb0025H11f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025H11f, DNA sequence
Length = 771
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 614 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 555
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 554 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 495
Query: 817 ata 819
|||
Sbjct: 494 ata 492
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 88654 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 88713
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 88714 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 88773
Query: 817 ata 819
|||
Sbjct: 88774 ata 88776
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 6404 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 6463
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 6464 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 6523
Query: 817 ata 819
|||
Sbjct: 6524 ata 6526
>gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013344, whole
genome shotgun sequence
Length = 27471
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 19004 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 18945
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 18944 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 18885
Query: 817 ata 819
|||
Sbjct: 18884 ata 18882
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 2263858 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 2263917
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 2263918 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 2263977
Query: 817 ata 819
|||
Sbjct: 2263978 ata 2263980
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 6500500 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 6500559
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 6500560 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 6500619
Query: 817 ata 819
|||
Sbjct: 6500620 ata 6500622
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 6500500 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 6500559
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 6500560 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 6500619
Query: 817 ata 819
|||
Sbjct: 6500620 ata 6500622
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 133 bits (67), Expect = 2e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 697 ccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcaccca 756
|||||| | ||| |||||||| || ||||| || | ||||||||| ||||||||||||||
Sbjct: 6572278 ccattcaattactggagcaaaagtaagctcaaacaaagtgataaacgagtacagcaccca 6572337
Query: 757 gtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggc 816
||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 6572338 gtaagtgagccattgctgatcatcaacaggagattttgtttctattgctctcacagaggc 6572397
Query: 817 ata 819
|||
Sbjct: 6572398 ata 6572400
>gb|AU031053.1|AU031053 AU031053 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60691_1A, mRNA sequence
Length = 314
Score = 103 bits (52), Expect = 2e-019
Identities = 129/153 (84%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgttt-caat 801
||||||||| ||||||| ||||||||||||||| |||| |||| ||||||||||| | ||
Sbjct: 313 gagtacagcncccagtaagtgagccattgctga-catcaacaggagattttgttttctat 255
Query: 802 tgctctaacagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggacatc 861
| |||| ||||||||||| | ||||| |||| |||||| || ||||| |||||||| ||
Sbjct: 254 tnctctcacagaggcatataatggataagcaantgaaactaatggcccggcgaggacgtc 195
Query: 862 catgttgttgaccaagaccttgaggaaagatcc 894
| ||||||| ||| | |||||||||||||||
Sbjct: 194 gaagttgttggccagcagcttgaggaaagatcc 162
>dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130B07, full
insert sequence
Length = 1430
Score = 97.6 bits (49), Expect = 1e-017
Identities = 151/185 (81%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 439 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 380
Query: 773 tgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgca 832
||||||||||||| ||||| ||||| ||||| |||| || || |||| ||||| ||
Sbjct: 379 tgatcatccacaggggatttggtttctattgccttaactgaagcgtacaacggataagct 320
Query: 833 agtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaagat 892
|||| |||||||||||| || || ||||| | ||| ||| | | |||||||| ||||||
Sbjct: 319 agtgcaaccaaaggcccagcaagaacatcgaagttcttggcaagaaccttgagcaaagat 260
Query: 893 ccgga 897
|||||
Sbjct: 259 ccgga 255
>gb|CZ556247.1|CZ556247 M0030269 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0030269, DNA sequence
Length = 173
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 744 agtacagcacccagtacgtgagccattgctgatcatccacagcagattttgtttcaattg 803
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| || |
Sbjct: 173 agtacagcacccagtatgtgacccattgctgatcatctacagcagattttgtttctatcg 114
Query: 804 ctctaacagaggcata 819
||| |||||| |||||
Sbjct: 113 ctcgaacagatgcata 98
>gb|D23623.1|D23623 RICC3112A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C3112_1A, mRNA sequence
Length = 366
Score = 93.7 bits (47), Expect = 2e-016
Identities = 146/179 (81%)
Strand = Plus / Minus
Query: 719 gtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatca 778
|||||||| || || || || |||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 365 gtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgttgatca 306
Query: 779 tccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgcaagtgaa 838
||||||| ||||| ||||| ||||| |||| || || |||| ||||| || |||| |
Sbjct: 305 tccacaggggatttggtttctattgccttaactgaagcgtacaacggataagctagtgca 246
Query: 839 accaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaagatccgga 897
||||||||||| || || ||||| | ||| ||| | | |||||||| |||||||||||
Sbjct: 245 accaaaggcccagcaagaacatcgaagttcttggcaagaaccttgagcaaagatccgga 187
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0007P22, complete sequence
Length = 148068
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 132841 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 132900
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 132901 tgatcatccacaggggatttggtttctattgc 132932
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0034P08, complete sequence
Length = 173088
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 21323 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 21382
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 21383 tgatcatccacaggggatttggtttctattgc 21414
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 977725 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 977666
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 977665 tgatcatccacaggggatttggtttctattgc 977634
>gb|AACV01023504.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023504, whole
genome shotgun sequence
Length = 36420
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 18979 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 19038
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 19039 tgatcatccacaggggatttggtttctattgc 19070
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 4285209 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 4285268
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 4285269 tgatcatccacaggggatttggtttctattgc 4285300
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 18450191 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 18450250
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 18450251 tgatcatccacaggggatttggtttctattgc 18450282
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 22319975 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 22319916
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 22319915 tgatcatccacaggggatttggtttctattgc 22319884
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 79.8 bits (40), Expect = 3e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 713 gcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattgc 772
||||| |||||||| || || || || |||||||||| ||||||||| |||||||||||
Sbjct: 22629886 gcaaatgtgagctcaaacagtgttattaatgagtacatcacccagtatgtgagccattgt 22629827
Query: 773 tgatcatccacagcagattttgtttcaattgc 804
||||||||||||| ||||| ||||| |||||
Sbjct: 22629826 tgatcatccacaggggatttggtttctattgc 22629795
>gb|AU031566.1|AU031566 AU031566 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61861_1A, mRNA sequence
Length = 686
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 59 gagtagaggacccagtaggtgagccattgctgatcatcca 20
>gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002277, whole
genome shotgun sequence
Length = 11086
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 6704 gagtagaggacccagtaggtgagccattgctgatcatcca 6665
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 30438754 gagtagaggacccagtaggtgagccattgctgatcatcca 30438793
>ref|NM_191863.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 387
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 68 gagtagaggacccagtaggtgagccattgctgatcatcca 29
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 4886137 gagtagaggacccagtaggtgagccattgctgatcatcca 4886176
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0456A01
Length = 143710
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 43811 gagtagaggacccagtaggtgagccattgctgatcatcca 43850
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0042A10
Length = 146840
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 146403 gagtagaggacccagtaggtgagccattgctgatcatcca 146442
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 4830384 gagtagaggacccagtaggtgagccattgctgatcatcca 4830423
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 30032105 gagtagaggacccagtaggtgagccattgctgatcatcca 30032144
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 743 gagtacagcacccagtacgtgagccattgctgatcatcca 782
||||| || |||||||| ||||||||||||||||||||||
Sbjct: 30358084 gagtagaggacccagtaggtgagccattgctgatcatcca 30358123
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,602,805
Number of Sequences: 438736
Number of extensions: 1602805
Number of successful extensions: 16036
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15413
Number of HSP's gapped (non-prelim): 618
length of query: 1139
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1118
effective length of database: 2,791,206,460
effective search space: 3120568822280
effective search space used: 3120568822280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)