BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB646953.1|CB646953 OSJNEb09K19.f OSJNEb Oryza sativa (j... 646 0.0
gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein... 646 0.0
dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA... 646 0.0
gb|CB646954.1|CB646954 OSJNEb09K19.r OSJNEb Oryza sativa (j... 638 e-180
dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA... 638 e-180
gb|AU070267.1|AU070267 AU070267 Rice mature leaf Oryza sati... 626 e-177
gb|CF291311.1|CF291311 14ROOT--01-K24.g1 Rice root plasmid ... 575 e-161
gb|AU091350.1|AU091350 AU091350 Rice panicle shorter than 3... 462 e-127
gb|AU100960.1|AU100960 AU100960 Rice callus Oryza sativa (j... 462 e-127
gb|C98030.1|C98030 C98030 Rice callus Oryza sativa (japonic... 454 e-125
gb|C28552.1|C28552 C28552 Rice callus cDNA Oryza sativa (ja... 452 e-124
gb|D40597.1|D40597 RICS2673A Rice shoot Oryza sativa (japon... 394 e-107
gb|C74220.1|C74220 C74220 Rice panicle shorter than 3cm Ory... 381 e-103
emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC O... 367 7e-099
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 367 7e-099
gb|AACV01024438.1| Oryza sativa (japonica cultivar-group) c... 367 7e-099
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 367 7e-099
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 367 7e-099
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 367 7e-099
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 367 7e-099
gb|AU069298.1|AU069298 AU069298 Rice callus Oryza sativa (j... 361 5e-097
ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA 349 2e-093
gb|D22576.1|D22576 RICC0400A Rice callus Oryza sativa (japo... 347 7e-093
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 295 2e-077
gb|AACV01017107.1| Oryza sativa (japonica cultivar-group) c... 295 2e-077
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 295 2e-077
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 295 2e-077
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 295 2e-077
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 295 2e-077
gb|AU097162.1|AU097162 AU097162 Rice shoot Oryza sativa (ja... 204 6e-050
gb|AU030435.1|AU030435 AU030435 Rice cDNA from immature lea... 141 8e-031
gb|AACV01008719.1| Oryza sativa (japonica cultivar-group) c... 107 1e-020
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|AQ446648.2|AQ446648 nbxb0070L02r CUGI Rice BAC Library O... 100 3e-018
gb|AZ133135.1|AZ133135 OSJNBb0108L17f CUGI Rice BAC Library... 84 2e-013
gb|CF291310.1|CF291310 14ROOT--01-K24.b1 Rice root plasmid ... 46 0.035
>gb|CB646953.1|CB646953 OSJNEb09K19.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09K19 5', mRNA sequence
Length = 747
Score = 646 bits (326), Expect = 0.0
Identities = 413/442 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 141 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 200
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 260
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 320
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 321 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 380
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 381 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 440
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 441 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctact 500
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 501 acctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatca 560
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 561 agcctattcaatcttgagctcc 582
>gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA, complete cds
Length = 820
Score = 646 bits (326), Expect = 0.0
Identities = 413/442 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 166 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 225
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 285
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 286 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 345
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 346 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 405
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 406 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 465
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 466 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctact 525
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 526 acctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatca 585
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 586 agcctattcaatcttgagctcc 607
>dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C07, full
insert sequence
Length = 805
Score = 646 bits (326), Expect = 0.0
Identities = 413/442 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 119 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 178
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 238
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 239 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 298
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 299 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 358
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 359 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 418
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 419 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctact 478
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 479 acctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatca 538
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 539 agcctattcaatcttgagctcc 560
>gb|CB646954.1|CB646954 OSJNEb09K19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09K19 3', mRNA sequence
Length = 776
Score = 638 bits (322), Expect = e-180
Identities = 412/442 (93%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 654 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 595
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 535
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 534 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 475
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 474 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 415
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 414 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 355
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 354 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttttact 295
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 294 acctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatca 235
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 234 agcctattcaatcttgagctcc 213
>dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H05, full
insert sequence
Length = 732
Score = 638 bits (322), Expect = e-180
Identities = 412/442 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 120 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttccccgagt 179
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 239
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 240 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 299
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 300 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 359
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 360 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 419
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 420 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctact 479
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 480 acctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatca 539
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 540 agcctattcaatcttgagctcc 561
>gb|AU070267.1|AU070267 AU070267 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20914_1A, mRNA sequence
Length = 712
Score = 626 bits (316), Expect = e-177
Identities = 414/444 (93%), Gaps = 2/444 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 102 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 161
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 221
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 222 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 281
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 282 tccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgcgtgg 341
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||
Sbjct: 342 ggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctccaaga 401
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccgg-atcttctac 447
| |||||||||||||| |||||| ||||||||||||| ||||| |||||| |||||||||
Sbjct: 402 ttggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccggcatcttctac 461
Query: 448 tacctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttc-aagat 506
|||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||
Sbjct: 462 tacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaaagat 521
Query: 507 caagccaatccagtcttgagctcc 530
|||||| || || |||||||||||
Sbjct: 522 caagcctattcaatcttgagctcc 545
>gb|CF291311.1|CF291311 14ROOT--01-K24.g1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--01-K24, mRNA sequence
Length = 650
Score = 575 bits (290), Expect = e-161
Identities = 404/442 (91%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 101 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 160
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 161 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 220
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 221 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 280
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
|||| || ||||| || ||||||||||| |||||||||||||| ||||| |||||| | |
Sbjct: 281 tccacgaatccgagattatgaaggaggatgacagcaactggccggagccagaccgcgtgg 340
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
| | |||||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||
Sbjct: 341 gaaggcaggagctggagatcgtgatggggaacgagcacatctccttcaccacctccaaga 400
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
|||||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 401 tcggctccctcgtcgacgtccagaccagcaaggaccccgagggcctccgcatcttctact 460
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 461 acctcgtccaggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatca 520
Query: 509 agccaatccagtcttgagctcc 530
|||| || || |||||||||||
Sbjct: 521 agcccattcaatcttgagctcc 542
>gb|AU091350.1|AU091350 AU091350 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30673, mRNA sequence
Length = 512
Score = 462 bits (233), Expect = e-127
Identities = 317/345 (91%)
Strand = Plus / Plus
Query: 186 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 60
Query: 246 cctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagcaa 305
||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 61 cctccgcgaggcccggaggatcatccaggagtccgagattatgaaggaggacgacaacaa 120
Query: 306 ctggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaacgaaca 365
|||||| |||||||||||| | || | |||||||||||||| || ||||||||||| ||
Sbjct: 121 ctggccagagcccgaccgcgtggggaggcaggagctcgagattgttatgggcaacgagca 180
Query: 366 catttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggaccc 425
||| || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 181 catctccttcaccacctccaagattggctccctcgtcgacgtccagaccagcaaggaccc 240
Query: 426 ggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttcact 485
||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 241 tgagggcctccgcatcttctactacctcgtccaggatctgaaatgtttcgtgttttcact 300
Query: 486 catcaacctccacttcaagatcaagccaatccagtcttgagctcc 530
|||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 301 catcaatctccacttcaagatcaagcctattcaatcttgagctcc 345
>gb|AU100960.1|AU100960 AU100960 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61567, mRNA sequence
Length = 645
Score = 462 bits (233), Expect = e-127
Identities = 366/407 (89%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 127 ttcgggcacgagttcctcgagttcgagttccg-ccccgacggcaagctccgctacgccaa 185
||||| ||||||||||| |||||||||||||| ||||||||| ||| |||| ||||||||
Sbjct: 8 ttcggncacgagttcctggagttcgagttccggccccgacgggaagntccggtacgccaa 67
Query: 186 caactcc-aactacaagaacgacaccatgatcc-gcaaggaggtcttcgtctccccctcc 243
||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||
Sbjct: 68 caactcccaactacaagaaggacaccatgatcccgcaaggaggtgttcgtctccccctcc 127
Query: 244 gtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagc 303
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 128 gtcctccgcgaggccaccaggatcatccacgaatccgagattatgaaggaggatgacagc 187
Query: 304 aactggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaacgaa 363
|||||||| ||||| |||||| | || | |||||||| |||||||| ||||| |||||
Sbjct: 188 aactggccggagccagaccgcgtgggaaggcaggagctggagatcgtgatggggaacgag 247
Query: 364 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 423
||||| || |||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 248 cacatctccttcaccacctccaagatcggctccctcgtcgacgtccagaccagcaaggac 307
Query: 424 ccggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttca 483
|| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 308 cccgagggcctccgcatcttctactacctcgtccaggatcttaagtgcttcgtgttttca 367
Query: 484 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctcc 530
|||||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 368 ctcatcaatctccacttcaagatcaagcccattcaatcttgagctcc 414
>gb|C98030.1|C98030 C98030 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0400_6Z, mRNA sequence
Length = 614
Score = 454 bits (229), Expect = e-125
Identities = 340/374 (90%), Gaps = 3/374 (0%)
Strand = Plus / Plus
Query: 159 ccccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccg 218
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct: 7 ccccgacggcaagctccn-tacgccaacaactccaactacaagaacgacnccntgatccg 65
Query: 219 caaggaggtcttcgtctccccctccgtcctcc-gcgaggccaggaggatcatccaggagt 277
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 66 caaggaggtcttcgtctccccctccgtcctcccgcgaggcccggaggatcatccaggagt 125
Query: 278 ccgatatc-atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacag 336
|||| || |||||||||||||||| ||||||||| |||||||||||| | || | |||
Sbjct: 126 ccgagatttatgaaggaggacgacaacaactggccagagcccgaccgcttggggaggcag 185
Query: 337 gagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctcc 396
||||||||||| || ||||||||||| ||||| || |||||||| |||||||| ||||||
Sbjct: 186 gagctcgagattgttatgggcaacgagcacatctccttcaccacctccaagattggctcc 245
Query: 397 ctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctactacctcgtc 456
|||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 246 ctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtc 305
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 306 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 365
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 366 caatcttgagctcc 379
>gb|C28552.1|C28552 C28552 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61567_1A, mRNA sequence
Length = 475
Score = 452 bits (228), Expect = e-124
Identities = 350/388 (90%), Gaps = 2/388 (0%)
Strand = Plus / Plus
Query: 124 aagttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctccgctacgcc 183
|||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 5 aagttcgggcacgagttcctggagttcgagttccggcccgacgggaagctccggtacgcc 64
Query: 184 aacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctcc 243
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 65 aacaactccaactacaagaaggacaccatgatccgcaaggaggtgttcgtctccccctcc 124
Query: 244 gtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagc 303
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 125 gtcctccgcgaggccaccaggatcatccacgaatccgagattatgaaggaggatgacagc 184
Query: 304 aactggcctgagcccgac-cgcatcggccgacaggagctcgagatcgtcatgggcaacga 362
|||||||| ||||| ||| | | || | |||||||| |||||||| ||||| |||||
Sbjct: 185 aactggccggagccagacgaacgtgggaaggcaggagctggagatcgtgatggggaacga 244
Query: 363 acacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaagga 422
||||| || |||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 245 gcacatctccttcaccacctccaagatcggctccctcgtcgacgtccagaccagcaagga 304
Query: 423 cccggagggactccggatcttctactacctcgtccaggatctgaagtgc-ttcgtgtttt 481
||| ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 305 ccccgagggcctccgcatcttctactacctcgtccaggatcttaagtgctttcgtgtttt 364
Query: 482 cactcatcaacctccacttcaagatcaa 509
|||||||||| |||||||||||||||||
Sbjct: 365 cactcatcaatctccacttcaagatcaa 392
>gb|D40597.1|D40597 RICS2673A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 416
Score = 394 bits (199), Expect = e-107
Identities = 228/237 (96%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 155 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 214
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 274
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 275 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 334
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaac-tggcctgagcccgaccgc 324
||||||||| ||| || |||||||||||||||| |||| | ||| ||||||||||||
Sbjct: 335 tccaggagtncgagattatgaaggaggacgacaacaacttngccagagcccgaccgc 391
>gb|C74220.1|C74220 C74220 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30673_1A, mRNA sequence
Length = 434
Score = 381 bits (192), Expect = e-103
Identities = 212/219 (96%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 162
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 222
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 223 ccatgatccgcaangaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 282
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaact 307
||||||||| ||| || |||||||||||||||| |||||
Sbjct: 283 tccaggagttcgagattatgaaggaggacgacaacaact 321
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 124204
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 107741 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 107800
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107801 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 107860
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 107861 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 107920
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 107921 tccaggagtccga 107933
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 108072 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 108131
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 108132 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 108191
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 108192 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 108246
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 110095 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 110154
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 110155 caatcttgagctcc 110168
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3111575 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 3111634
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3111635 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 3111694
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3111695 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 3111754
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 3111755 tccaggagtccga 3111767
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 3111906 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 3111965
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 3111966 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 3112025
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 3112026 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 3112080
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 3113929 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 3113988
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 3113989 caatcttgagctcc 3114002
>gb|AACV01024438.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024438, whole
genome shotgun sequence
Length = 51032
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35734 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 35793
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35794 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 35853
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 35854 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 35913
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 35914 tccaggagtccga 35926
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 36065 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 36124
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 36125 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 36184
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 36185 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 36239
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 38088 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 38147
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 38148 caatcttgagctcc 38161
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111
genomic scaffold, whole genome shotgun sequence
Length = 3984395
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 632526 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 632585
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632586 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 632645
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 632646 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 632705
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 632706 tccaggagtccga 632718
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 632857 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 632916
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 632917 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 632976
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 632977 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 633031
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 634880 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 634939
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 634940 caatcttgagctcc 634953
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8681090 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 8681149
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681150 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 8681209
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8681210 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 8681269
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 8681270 tccaggagtccga 8681282
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 8681421 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 8681480
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 8681481 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 8681540
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 8681541 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 8681595
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 8683444 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 8683503
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 8683504 caatcttgagctcc 8683517
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 10958678 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 10958737
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10958738 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 10958797
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10958798 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 10958857
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 10958858 tccaggagtccga 10958870
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 10959009 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 10959068
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 10959069 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 10959128
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 10959129 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 10959183
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 10961032 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 10961091
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 10961092 caatcttgagctcc 10961105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 367 bits (185), Expect = 7e-099
Identities = 191/193 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 10958377 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 10958436
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10958437 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 10958496
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10958497 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggaggatca 10958556
Query: 269 tccaggagtccga 281
|||||||||||||
Sbjct: 10958557 tccaggagtccga 10958569
Score = 196 bits (99), Expect = 2e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 10958708 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 10958767
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 10958768 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 10958827
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 10958828 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 10958882
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 10960731 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 10960790
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 10960791 caatcttgagctcc 10960804
>gb|AU069298.1|AU069298 AU069298 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53993_5A, mRNA sequence
Length = 464
Score = 361 bits (182), Expect = 5e-097
Identities = 241/259 (93%), Gaps = 2/259 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 95 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgatttcctcgagt 154
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tcnagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 214
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||| ||||||||||| |||||||||||||||||| | ||| |||||||||
Sbjct: 215 ccatgatccgcaa-gaggtcttcgtntccccctccgtcctccgcna-gcccggaggatca 272
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||| || || ||||||||||||| ||||||||| |||||||||||| | |
Sbjct: 273 tccaggagtccgagattataaaggaggacgacaacaactggccagagcccgaccgcttgg 332
Query: 329 gccgacaggagctcgagat 347
| | ||||||||||||||
Sbjct: 333 ggaggcaggagctcgagat 351
>ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 318
Score = 349 bits (176), Expect = 2e-093
Identities = 283/318 (88%), Gaps = 3/318 (0%)
Strand = Plus / Plus
Query: 211 atgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatc 270
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 atgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatcatc 60
Query: 271 caggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcggc 330
|| || ||||| || ||||||||||| |||||||||||||| ||||| |||||| | ||
Sbjct: 61 cacgaatccgagattatgaaggaggatgacagcaactggccggagccagaccgcgtggga 120
Query: 331 cgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaagatc 390
| |||||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 121 aggcaggagctggagatcgtgatggggaacgagcacatctccttcaccacctccaagatc 180
Query: 391 ggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctactac 450
|||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 181 ggctccctcgtcgacgtccagaccagcaaggaccccgagggcctccgcatcttctactac 240
Query: 451 ctcgtc---caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatc 507
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 ctcgtccagcaggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatc 300
Query: 508 aagccaatccagtcttga 525
||||| || || ||||||
Sbjct: 301 aagcccattcaatcttga 318
>gb|D22576.1|D22576 RICC0400A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0400_1A, mRNA sequence
Length = 325
Score = 347 bits (175), Expect = 7e-093
Identities = 205/213 (96%), Gaps = 2/213 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 115 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctcgagt 174
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 234
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||
Sbjct: 235 ccatgatccgcaaggaggtcttcgtctccccctccgtcctncg-ga-gcccggaggatca 292
Query: 269 tccaggagtccgatatcatgaaggaggacgaca 301
||||||||| ||| || ||||||||||||||||
Sbjct: 293 tccaggagtncgagattatgaaggaggacgaca 325
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 87366 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 87425
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 87426 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 87485
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 87486 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 87545
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 87546 tccacgaatccga 87558
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 87659 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 87718
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 87719 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 87778
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 87779 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 87833
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 91122 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 91181
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 91182 caatcttgagctcc 91195
>gb|AACV01017107.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017107, whole
genome shotgun sequence
Length = 5523
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1186 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 1127
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1126 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 1067
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 1066 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 1007
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 1006 tccacgaatccga 994
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 893 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 834
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 833 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 774
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 773 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 719
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 144278 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 144337
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 144338 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 144397
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 144398 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 144457
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 144458 tccacgaatccga 144470
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 144571 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 144630
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 144631 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 144690
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 144691 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 144745
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 148034 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 148093
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 148094 caatcttgagctcc 148107
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 384347 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 384406
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 384407 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 384466
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 384467 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 384526
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 384527 tccacgaatccga 384539
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 384640 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 384699
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 384700 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 384759
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 384760 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 384814
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 384347 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 384406
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 384407 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 384466
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 384467 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 384526
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 384527 tccacgaatccga 384539
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 384640 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 384699
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 384700 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 384759
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 384760 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 384814
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 295 bits (149), Expect = 2e-077
Identities = 182/193 (94%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 377852 agttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggagt 377911
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 377912 tcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggaca 377971
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 377972 ccatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatca 378031
Query: 269 tccaggagtccga 281
|||| || |||||
Sbjct: 378032 tccacgaatccga 378044
Score = 188 bits (95), Expect = 4e-045
Identities = 155/175 (88%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 378145 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 378204
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 378205 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 378264
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
|||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 378265 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 378319
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 381608 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 381667
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 381668 caatcttgagctcc 381681
>gb|AU097162.1|AU097162 AU097162 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2673, mRNA sequence
Length = 462
Score = 204 bits (103), Expect = 6e-050
Identities = 169/190 (88%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 343 gagatcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtc 402
||||| || ||||||||||| || || || |||||||| |||||||| ||||||||||||
Sbjct: 52 gagattgttatgggcaacgagcatatctccttcaccacctccaagattggctccctcgtc 111
Query: 403 gatgtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggat 462
|| |||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 112 gacgtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccaggat 171
Query: 463 ctgaagt--gcttcgtgttttcactcatcaacctccacttcaagatcaagccaatccagt 520
||||| | ||||||||||||||||||||| |||||||||||||||||||| || || |
Sbjct: 172 ctgaaatcgtcttcgtgttttcactcatcaatctccacttcaagatcaagcctattcaat 231
Query: 521 cttgagctcc 530
||||||||||
Sbjct: 232 cttgagctcc 241
>gb|AU030435.1|AU030435 AU030435 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51052_1Z, mRNA sequence
Length = 379
Score = 141 bits (71), Expect = 8e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|||||| |||||| || ||| |||| ||||| |||||||||| ||||||||||||||||
Sbjct: 16 gtccagaccagcagggcccctgaggncctccgcatcttctactncctcgtccaggatctg 75
Query: 466 aagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttga 525
|| || |||||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct: 76 aaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctattcaatcttga 135
Query: 526 gctcc 530
|||||
Sbjct: 136 gctcc 140
>gb|AACV01008719.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008719, whole
genome shotgun sequence
Length = 53393
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1916 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 1857
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 1856 caatcttgagctcc 1843
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
genomic scaffold, whole genome shotgun sequence
Length = 1402826
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 189388 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 189447
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 189448 caatcttgagctcc 189461
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 4493287 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 4493346
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 4493347 caatcttgagctcc 4493360
>gb|AQ446648.2|AQ446648 nbxb0070L02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0070L02r, DNA sequence
Length = 452
Score = 99.6 bits (50), Expect = 3e-018
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 220 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 161
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 160 caatcttgagctcc 147
>gb|AZ133135.1|AZ133135 OSJNBb0108L17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0108L17f, DNA
sequence
Length = 770
Score = 83.8 bits (42), Expect = 2e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
||||||||||| || |||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 141 caggatctgaaatgtttcgtgttttcactcatcaatatacacttcaagatcaagcctatt 82
Query: 517 cagtcttgagctcc 530
|| |||||||||||
Sbjct: 81 caatcttgagctcc 68
>gb|CF291310.1|CF291310 14ROOT--01-K24.b1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--01-K24, mRNA sequence
Length = 362
Score = 46.1 bits (23), Expect = 0.035
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 450 cctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaa 509
||||||||||||| | ||| | |||| |||||| |||| ||| ||| ||||||||||||
Sbjct: 343 cctcgtccaggattttaaggggttcgggttttccctcaccaatttccccttcaagatcaa 284
Query: 510 gcc 512
|||
Sbjct: 283 gcc 281
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,038,653
Number of Sequences: 438736
Number of extensions: 1038653
Number of successful extensions: 5608
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5477
Number of HSP's gapped (non-prelim): 117
length of query: 964
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 943
effective length of database: 2,791,206,460
effective search space: 2632107691780
effective search space used: 2632107691780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)