BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB646953.1|CB646953 OSJNEb09K19.f OSJNEb Oryza sativa (j... 615 e-173
gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein... 615 e-173
dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA... 615 e-173
gb|CB646954.1|CB646954 OSJNEb09K19.r OSJNEb Oryza sativa (j... 607 e-171
dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA... 607 e-171
gb|AU070267.1|AU070267 AU070267 Rice mature leaf Oryza sati... 595 e-167
gb|CF291311.1|CF291311 14ROOT--01-K24.g1 Rice root plasmid ... 521 e-145
gb|AU091350.1|AU091350 AU091350 Rice panicle shorter than 3... 446 e-123
gb|C98030.1|C98030 C98030 Rice callus Oryza sativa (japonic... 438 e-120
gb|AU100960.1|AU100960 AU100960 Rice callus Oryza sativa (j... 422 e-115
gb|C28552.1|C28552 C28552 Rice callus cDNA Oryza sativa (ja... 420 e-115
gb|D40597.1|D40597 RICS2673A Rice shoot Oryza sativa (japon... 371 e-100
gb|C74220.1|C74220 C74220 Rice panicle shorter than 3cm Ory... 359 1e-096
emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC O... 343 8e-092
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 343 8e-092
gb|AACV01024438.1| Oryza sativa (japonica cultivar-group) c... 343 8e-092
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 343 8e-092
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 343 8e-092
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 343 8e-092
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 343 8e-092
gb|AU069298.1|AU069298 AU069298 Rice callus Oryza sativa (j... 341 3e-091
gb|D22576.1|D22576 RICC0400A Rice callus Oryza sativa (japo... 323 7e-086
ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA 317 5e-084
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 266 1e-068
gb|AACV01017107.1| Oryza sativa (japonica cultivar-group) c... 266 1e-068
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 266 1e-068
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 266 1e-068
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 266 1e-068
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 266 1e-068
gb|AU097162.1|AU097162 AU097162 Rice shoot Oryza sativa (ja... 186 1e-044
gb|AU030435.1|AU030435 AU030435 Rice cDNA from immature lea... 125 3e-026
gb|AQ446648.2|AQ446648 nbxb0070L02r CUGI Rice BAC Library O... 84 1e-013
gb|AZ133135.1|AZ133135 OSJNBb0108L17f CUGI Rice BAC Library... 76 3e-011
gb|AACV01008719.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 44 0.10
gb|AACV01022667.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 42 0.40
gb|AACV01001747.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01008426.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01009479.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01010765.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.40
ref|NT_079858.2| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 42 0.40
gb|AC093921.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401182.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
emb|AL606612.3|OSJN00043 Oryza sativa genomic DNA, chromoso... 42 0.40
emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromoso... 42 0.40
emb|AL662974.3|OSJN00171 Oryza sativa genomic DNA, chromoso... 42 0.40
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
>gb|CB646953.1|CB646953 OSJNEb09K19.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09K19 5', mRNA sequence
Length = 747
Score = 615 bits (310), Expect = e-173
Identities = 412/446 (92%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 137 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 196
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 256
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 257 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 316
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 317 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 376
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 377 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 436
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttc 426
||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 437 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttc 496
Query: 427 tactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaag 486
|||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||
Sbjct: 497 tactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaag 556
Query: 487 atcaagccaatccagtcttgagctcc 512
|||||||| || || |||||||||||
Sbjct: 557 atcaagcctattcaatcttgagctcc 582
>gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA, complete cds
Length = 820
Score = 615 bits (310), Expect = e-173
Identities = 412/446 (92%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 162 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 221
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 281
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 282 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 341
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 342 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 401
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 402 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 461
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttc 426
||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 462 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttc 521
Query: 427 tactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaag 486
|||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||
Sbjct: 522 tactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaag 581
Query: 487 atcaagccaatccagtcttgagctcc 512
|||||||| || || |||||||||||
Sbjct: 582 atcaagcctattcaatcttgagctcc 607
>dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C07, full
insert sequence
Length = 805
Score = 615 bits (310), Expect = e-173
Identities = 412/446 (92%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 115 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 174
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 234
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 235 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 294
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 295 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 354
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 355 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 414
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttc 426
||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 415 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttc 474
Query: 427 tactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaag 486
|||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||
Sbjct: 475 tactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaag 534
Query: 487 atcaagccaatccagtcttgagctcc 512
|||||||| || || |||||||||||
Sbjct: 535 atcaagcctattcaatcttgagctcc 560
>gb|CB646954.1|CB646954 OSJNEb09K19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09K19 3', mRNA sequence
Length = 776
Score = 607 bits (306), Expect = e-171
Identities = 411/446 (92%)
Strand = Plus / Minus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 658 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 599
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 539
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 538 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 479
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 478 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 419
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 418 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 359
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttc 426
||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||
Sbjct: 358 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttt 299
Query: 427 tactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaag 486
|||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||
Sbjct: 298 tactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaag 239
Query: 487 atcaagccaatccagtcttgagctcc 512
|||||||| || || |||||||||||
Sbjct: 238 atcaagcctattcaatcttgagctcc 213
>dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H05, full
insert sequence
Length = 732
Score = 607 bits (306), Expect = e-171
Identities = 411/446 (92%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |
Sbjct: 116 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcccc 175
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 235
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 236 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 295
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 296 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 355
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 356 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 415
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttc 426
||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 416 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttc 475
Query: 427 tactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaag 486
|||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||
Sbjct: 476 tactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaag 535
Query: 487 atcaagccaatccagtcttgagctcc 512
|||||||| || || |||||||||||
Sbjct: 536 atcaagcctattcaatcttgagctcc 561
>gb|AU070267.1|AU070267 AU070267 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20914_1A, mRNA sequence
Length = 712
Score = 595 bits (300), Expect = e-167
Identities = 413/448 (92%), Gaps = 2/448 (0%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 98 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 157
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 217
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 218 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 277
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 278 atcatccaggagtccgagattatgaaggaggacgacaacaactggccagagcccgaccgc 337
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttcc 366
| || | |||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 338 gtggggaggcaggagctcgagattgttatgggcaacgagcacatctccttcaccacctcc 397
Query: 367 aagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccgg-atctt 425
||||| |||||||||||||| |||||| ||||||||||||| |||||||||||| |||||
Sbjct: 398 aagattggctccctcgtcgacgtccagaccagcaaggaccctgagggcctccggcatctt 457
Query: 426 ctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttc-a 484
||||||||| |||||||||||||| ||||||||||| || |||||||| || |||||| |
Sbjct: 458 ctactacctcgtccaggatctgaaatgtttcgtgttttcactcatcaatctccacttcaa 517
Query: 485 agatcaagccaatccagtcttgagctcc 512
|||||||||| || || |||||||||||
Sbjct: 518 agatcaagcctattcaatcttgagctcc 545
>gb|CF291311.1|CF291311 14ROOT--01-K24.g1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--01-K24, mRNA sequence
Length = 650
Score = 521 bits (263), Expect = e-145
Identities = 398/443 (89%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 100 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 159
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 160 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 219
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 220 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 279
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
||||| || ||||| || ||||||||||| |||||||||||||| ||||| |||||| |
Sbjct: 280 atccacgaatccgagattatgaaggaggatgacagcaactggccggagccagaccgcgtg 339
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
|| | |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 340 ggaaggcaggagctggagatcgtgatggggaacgagcacatctccttcaccacctccaag 399
Query: 370 atcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctac 429
||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 400 atcggctccctcgtcgacgtccagaccagcaaggaccccgagggcctccgcatcttctac 459
Query: 430 taccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatc 489
||||| ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 460 tacctcgtccaggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatc 519
Query: 490 aagccaatccagtcttgagctcc 512
||||| || || |||||||||||
Sbjct: 520 aagcccattcaatcttgagctcc 542
>gb|AU091350.1|AU091350 AU091350 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30673, mRNA sequence
Length = 512
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Plus
Query: 168 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcgccctccgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 60
Query: 228 cctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagcaa 287
||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 61 cctccgcgaggcccggaggatcatccaggagtccgagattatgaaggaggacgacaacaa 120
Query: 288 ctggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagca 347
|||||| |||||||||||| | || | |||||||||||||| || ||||||||||||||
Sbjct: 121 ctggccagagcccgaccgcgtggggaggcaggagctcgagattgttatgggcaacgagca 180
Query: 348 catttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggaccc 407
||| || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 181 catctccttcaccacctccaagattggctccctcgtcgacgtccagaccagcaaggaccc 240
Query: 408 ggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgct 467
||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct: 241 tgagggcctccgcatcttctactacctcgtccaggatctgaaatgtttcgtgttttcact 300
Query: 468 catcaaccttcacttcaagatcaagccaatccagtcttgagctcc 512
|||||| || ||||||||||||||||| || || |||||||||||
Sbjct: 301 catcaatctccacttcaagatcaagcctattcaatcttgagctcc 345
>gb|C98030.1|C98030 C98030 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0400_6Z, mRNA sequence
Length = 614
Score = 438 bits (221), Expect = e-120
Identities = 338/374 (90%), Gaps = 3/374 (0%)
Strand = Plus / Plus
Query: 141 ccccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccg 200
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct: 7 ccccgacggcaagctccn-tacgccaacaactccaactacaagaacgacnccntgatccg 65
Query: 201 caaggaggtcttcgtctcgccctccgtcctcc-gcgaggccaggaggatcatccaggagt 259
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 66 caaggaggtcttcgtctccccctccgtcctcccgcgaggcccggaggatcatccaggagt 125
Query: 260 ccgacatc-atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccag 318
|||| || |||||||||||||||| ||||||||| |||||||||||| | || | |||
Sbjct: 126 ccgagatttatgaaggaggacgacaacaactggccagagcccgaccgcttggggaggcag 185
Query: 319 gagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctcc 378
||||||||||| || ||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct: 186 gagctcgagattgttatgggcaacgagcacatctccttcaccacctccaagattggctcc 245
Query: 379 ctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactaccttgtc 438
|||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 246 ctcgtcgacgtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtc 305
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 306 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 365
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 366 caatcttgagctcc 379
>gb|AU100960.1|AU100960 AU100960 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61567, mRNA sequence
Length = 645
Score = 422 bits (213), Expect = e-115
Identities = 361/407 (88%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 109 ttcgggcacgagttcctcgagttcgagctccg-ccccgacggcaagctccgctacgccaa 167
||||| ||||||||||| ||||||||| |||| ||||||||| ||| |||| ||||||||
Sbjct: 8 ttcggncacgagttcctggagttcgagttccggccccgacgggaagntccggtacgccaa 67
Query: 168 caactcc-aactacaagaacgacaccatgatcc-gcaaggaggtcttcgtctcgccctcc 225
||||||| ||||||||||| ||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 68 caactcccaactacaagaaggacaccatgatcccgcaaggaggtgttcgtctccccctcc 127
Query: 226 gtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagc 285
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 128 gtcctccgcgaggccaccaggatcatccacgaatccgagattatgaaggaggatgacagc 187
Query: 286 aactggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgag 345
|||||||| ||||| |||||| | || | |||||||| |||||||| ||||| ||||||
Sbjct: 188 aactggccggagccagaccgcgtgggaaggcaggagctggagatcgtgatggggaacgag 247
Query: 346 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 405
||||| || |||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 248 cacatctccttcaccacctccaagatcggctccctcgtcgacgtccagaccagcaaggac 307
Query: 406 ccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcg 465
|| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 308 cccgagggcctccgcatcttctactacctcgtccaggatcttaagtgcttcgtgttttca 367
Query: 466 ctcatcaaccttcacttcaagatcaagccaatccagtcttgagctcc 512
|||||||| || ||||||||||||||||| || || |||||||||||
Sbjct: 368 ctcatcaatctccacttcaagatcaagcccattcaatcttgagctcc 414
>gb|C28552.1|C28552 C28552 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61567_1A, mRNA sequence
Length = 475
Score = 420 bits (212), Expect = e-115
Identities = 346/388 (89%), Gaps = 2/388 (0%)
Strand = Plus / Plus
Query: 106 aagttcgggcacgagttcctcgagttcgagctccgccccgacggcaagctccgctacgcc 165
|||||||||||||||||||| ||||||||| |||| |||||||| |||||||| ||||||
Sbjct: 5 aagttcgggcacgagttcctggagttcgagttccggcccgacgggaagctccggtacgcc 64
Query: 166 aacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcgccctcc 225
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 65 aacaactccaactacaagaaggacaccatgatccgcaaggaggtgttcgtctccccctcc 124
Query: 226 gtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagc 285
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 125 gtcctccgcgaggccaccaggatcatccacgaatccgagattatgaaggaggatgacagc 184
Query: 286 aactggcccgagcccgac-cgcatcggccgccaggagctcgagatcgtcatgggcaacga 344
|||||||| ||||| ||| | | || | |||||||| |||||||| ||||| |||||
Sbjct: 185 aactggccggagccagacgaacgtgggaaggcaggagctggagatcgtgatggggaacga 244
Query: 345 gcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaagga 404
|||||| || |||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 245 gcacatctccttcaccacctccaagatcggctccctcgtcgacgtccagaccagcaagga 304
Query: 405 cccggagggcctccggatcttctactaccttgtccaggatctgaagtg-tttcgtgttct 463
||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||| |
Sbjct: 305 ccccgagggcctccgcatcttctactacctcgtccaggatcttaagtgctttcgtgtttt 364
Query: 464 cgctcatcaaccttcacttcaagatcaa 491
| |||||||| || ||||||||||||||
Sbjct: 365 cactcatcaatctccacttcaagatcaa 392
>gb|D40597.1|D40597 RICS2673A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 416
Score = 371 bits (187), Expect = e-100
Identities = 228/241 (94%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 151 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 210
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 270
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 271 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 330
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaac-tggcccgagcccgaccg 305
||||||||||||| ||| || |||||||||||||||| |||| | ||| |||||||||||
Sbjct: 331 atcatccaggagtncgagattatgaaggaggacgacaacaacttngccagagcccgaccg 390
Query: 306 c 306
|
Sbjct: 391 c 391
>gb|C74220.1|C74220 C74220 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30673_1A, mRNA sequence
Length = 434
Score = 359 bits (181), Expect = 1e-096
Identities = 262/286 (91%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 99 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 158
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 218
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 219 gacaccatgatccgcaangaggtcttcgtctccccctccgtcctccgcgaggcccggagg 278
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaac-tggcccgagcccgaccg 305
||||||||||||| ||| || |||||||||||||||| |||| ||||| |||| ||| ||
Sbjct: 279 atcatccaggagttcgagattatgaaggaggacgacaacaacttggccagagcncga-cg 337
Query: 306 catcggccgccaggagct-cgagatcgtcatgggcaacgagcacat 350
| | || | |||||||| |||||| | |||||||||||||||||
Sbjct: 338 cgttgggaggcaggagctccgagattnttatgggcaacgagcacat 383
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 124204
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 107737 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 107796
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107797 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 107856
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 107857 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 107916
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 107917 atcatccaggagtccga 107933
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 108072 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 108131
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 108132 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 108191
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 108192 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 108246
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 110095 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 110154
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 110155 caatcttgagctcc 110168
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 3111571 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 3111630
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3111631 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 3111690
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 3111691 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 3111750
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 3111751 atcatccaggagtccga 3111767
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 3111906 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 3111965
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 3111966 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 3112025
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 3112026 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 3112080
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 3113929 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 3113988
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 3113989 caatcttgagctcc 3114002
>gb|AACV01024438.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024438, whole
genome shotgun sequence
Length = 51032
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 35730 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 35789
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35790 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 35849
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 35850 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 35909
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 35910 atcatccaggagtccga 35926
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 36065 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 36124
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 36125 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 36184
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 36185 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 36239
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 38088 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 38147
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 38148 caatcttgagctcc 38161
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111
genomic scaffold, whole genome shotgun sequence
Length = 3984395
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 632522 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 632581
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632582 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 632641
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 632642 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 632701
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 632702 atcatccaggagtccga 632718
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 632857 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 632916
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 632917 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 632976
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 632977 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 633031
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 634880 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 634939
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 634940 caatcttgagctcc 634953
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 8681086 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 8681145
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681146 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 8681205
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 8681206 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 8681265
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 8681266 atcatccaggagtccga 8681282
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 8681421 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 8681480
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 8681481 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 8681540
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 8681541 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 8681595
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 8683444 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 8683503
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 8683504 caatcttgagctcc 8683517
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 10958674 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 10958733
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10958734 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 10958793
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 10958794 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 10958853
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 10958854 atcatccaggagtccga 10958870
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 10959009 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 10959068
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 10959069 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 10959128
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 10959129 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 10959183
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 10961032 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 10961091
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 10961092 caatcttgagctcc 10961105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 343 bits (173), Expect = 8e-092
Identities = 191/197 (96%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 10958373 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 10958432
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10958433 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 10958492
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 10958493 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggcccggagg 10958552
Query: 247 atcatccaggagtccga 263
|||||||||||||||||
Sbjct: 10958553 atcatccaggagtccga 10958569
Score = 204 bits (103), Expect = 5e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||| ||||||||| |||||||||||| | || | ||||||||||||
Sbjct: 10958708 atgaaggaggacgacaacaactggccagagcccgaccgcgtggggaggcaggagctcgag 10958767
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 10958768 attgttatgggcaacgagcacatctccttcaccacctccaagattggctccctcgtcgac 10958827
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 10958828 gtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccagg 10958882
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 10960731 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 10960790
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 10960791 caatcttgagctcc 10960804
>gb|AU069298.1|AU069298 AU069298 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53993_5A, mRNA sequence
Length = 464
Score = 341 bits (172), Expect = 3e-091
Identities = 258/284 (90%), Gaps = 3/284 (1%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 91 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgatttcctc 150
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gagttcnagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 210
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
||||||||||||||||| ||||||||||| || ||||||||||||||| | ||| |||||
Sbjct: 211 gacaccatgatccgcaa-gaggtcttcgtntccccctccgtcctccgcna-gcccggagg 268
Query: 247 atcatccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgc 306
||||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||
Sbjct: 269 atcatccaggagtccgagattataaaggaggacgacaacaactggccagagcccgaccgc 328
Query: 307 atcggccgccaggagctcgagatcgtcatgggcaacgagcacat 350
| || | |||||||||||||| | ||||| |||||||||||
Sbjct: 329 ttggggaggcaggagctcgagattnttatggg-aacgagcacat 371
>gb|D22576.1|D22576 RICC0400A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0400_1A, mRNA sequence
Length = 325
Score = 323 bits (163), Expect = 7e-086
Identities = 205/217 (94%), Gaps = 2/217 (0%)
Strand = Plus / Plus
Query: 67 ggcgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctc 126
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 111 ggcgagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctc 170
Query: 127 gagttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 230
Query: 187 gacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggagg 246
|||||||||||||||||||||||||||||||| ||||||||||| || || ||| |||||
Sbjct: 231 gacaccatgatccgcaaggaggtcttcgtctccccctccgtcctncg-ga-gcccggagg 288
Query: 247 atcatccaggagtccgacatcatgaaggaggacgaca 283
||||||||||||| ||| || ||||||||||||||||
Sbjct: 289 atcatccaggagtncgagattatgaaggaggacgaca 325
>ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 318
Score = 317 bits (160), Expect = 5e-084
Identities = 279/318 (87%), Gaps = 3/318 (0%)
Strand = Plus / Plus
Query: 193 atgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatc 252
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1 atgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatcatc 60
Query: 253 caggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggc 312
|| || ||||| || ||||||||||| |||||||||||||| ||||| |||||| | ||
Sbjct: 61 cacgaatccgagattatgaaggaggatgacagcaactggccggagccagaccgcgtggga 120
Query: 313 cgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatc 372
| |||||||| |||||||| ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 121 aggcaggagctggagatcgtgatggggaacgagcacatctccttcaccacctccaagatc 180
Query: 373 ggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactac 432
|||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 181 ggctccctcgtcgacgtccagaccagcaaggaccccgagggcctccgcatcttctactac 240
Query: 433 cttgtc---caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatc 489
|| ||| |||||||| ||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 241 ctcgtccagcaggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatc 300
Query: 490 aagccaatccagtcttga 507
||||| || || ||||||
Sbjct: 301 aagcccattcaatcttga 318
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 87365 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 87424
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 87425 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 87484
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 87485 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 87544
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 87545 atccacgaatccga 87558
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 87659 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 87718
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 87719 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 87778
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 87779 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 87833
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 91122 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 91181
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 91182 caatcttgagctcc 91195
>gb|AACV01017107.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017107, whole
genome shotgun sequence
Length = 5523
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Minus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 1187 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 1128
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 1127 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 1068
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 1067 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 1008
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 1007 atccacgaatccga 994
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 893 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 834
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 833 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 774
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 773 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 719
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 144277 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 144336
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 144337 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 144396
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 144397 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 144456
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 144457 atccacgaatccga 144470
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 144571 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 144630
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 144631 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 144690
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 144691 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 144745
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 148034 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 148093
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 148094 caatcttgagctcc 148107
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 384346 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 384405
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 384406 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 384465
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 384466 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 384525
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 384526 atccacgaatccga 384539
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 384640 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 384699
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 384700 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 384759
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 384760 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 384814
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 384346 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 384405
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 384406 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 384465
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 384466 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 384525
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 384526 atccacgaatccga 384539
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 384640 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 384699
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 384700 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 384759
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 384760 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 384814
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 266 bits (134), Expect = 1e-068
Identities = 179/194 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 377851 gagttctacctgcggtactacgtggggcacaaggggaagttcgggcacgagttcctggag 377910
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 377911 ttcgagttccggcccgacgggaagctccggtacgccaacaactccaactacaagaaggac 377970
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 377971 accatgatccgcaaggaggtgttcgtctccccctccgtcctccgcgaggccaccaggatc 378030
Query: 250 atccaggagtccga 263
||||| || |||||
Sbjct: 378031 atccacgaatccga 378044
Score = 196 bits (99), Expect = 1e-047
Identities = 156/175 (89%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
||||||||||| |||||||||||||| ||||| |||||| | || | |||||||| |||
Sbjct: 378145 atgaaggaggatgacagcaactggccggagccagaccgcgtgggaaggcaggagctggag 378204
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 378205 atcgtgatggggaacgagcacatctccttcaccacctccaagatcggctccctcgtcgac 378264
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 378265 gtccagaccagcaaggaccccgagggcctccgcatcttctactacctcgtccagg 378319
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 381608 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 381667
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 381668 caatcttgagctcc 381681
>gb|AU097162.1|AU097162 AU097162 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2673, mRNA sequence
Length = 462
Score = 186 bits (94), Expect = 1e-044
Identities = 168/190 (88%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 325 gagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtc 384
||||| || |||||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct: 52 gagattgttatgggcaacgagcatatctccttcaccacctccaagattggctccctcgtc 111
Query: 385 gatgtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggat 444
|| |||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 112 gacgtccagaccagcaaggaccctgagggcctccgcatcttctactacctcgtccaggat 171
Query: 445 ctgaagt-gt-ttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagt 502
||||| | || |||||||| || |||||||| || ||||||||||||||||| || || |
Sbjct: 172 ctgaaatcgtcttcgtgttttcactcatcaatctccacttcaagatcaagcctattcaat 231
Query: 503 cttgagctcc 512
||||||||||
Sbjct: 232 cttgagctcc 241
>gb|AU030435.1|AU030435 AU030435 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51052_1Z, mRNA sequence
Length = 379
Score = 125 bits (63), Expect = 3e-026
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|||||| |||||| || ||| |||| |||||| |||||||||| ||| ||||||||||||
Sbjct: 16 gtccagaccagcagggcccctgaggncctccgcatcttctactncctcgtccaggatctg 75
Query: 448 aagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttga 507
|| ||||||||||| || |||||||| || ||||||||||||||||| || || ||||||
Sbjct: 76 aaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctattcaatcttga 135
Query: 508 gctcc 512
|||||
Sbjct: 136 gctcc 140
>gb|AQ446648.2|AQ446648 nbxb0070L02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0070L02r, DNA sequence
Length = 452
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 220 caggatctgaaatgtttcgtgttttcactcatcaatctccacttcaagatcaagcctatt 161
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 160 caatcttgagctcc 147
>gb|AZ133135.1|AZ133135 OSJNBb0108L17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0108L17f, DNA
sequence
Length = 770
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||| ||||||||||| || |||||||| | ||||||||||||||||| ||
Sbjct: 141 caggatctgaaatgtttcgtgttttcactcatcaatatacacttcaagatcaagcctatt 82
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 81 caatcttgagctcc 68
>gb|AACV01008719.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008719, whole
genome shotgun sequence
Length = 53393
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 1916 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 1857
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 1856 caatcttgagctcc 1843
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
genomic scaffold, whole genome shotgun sequence
Length = 1402826
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 189388 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 189447
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 189448 caatcttgagctcc 189461
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
|||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 4493287 caggatcttaagtgcttcgtgttttcactcatcaatctccacttcaagatcaagcccatt 4493346
Query: 499 cagtcttgagctcc 512
|| |||||||||||
Sbjct: 4493347 caatcttgagctcc 4493360
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 tggcggcggccggcggcgaga 43
|||||||||||||||||||||
Sbjct: 14512024 tggcggcggccggcggcgaga 14512044
Score = 42.1 bits (21), Expect = 0.40
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgagaacagc 48
|||||||||||||||||||| ||||
Sbjct: 671593 ggcggcggccggcggcgagagcagc 671569
>ref|NT_107144.1| Oryza sativa (japonica cultivar-group)
Length = 965832
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 860909 atggcggcggccggcggcgaga 860888
>gb|AACV01022667.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022667, whole
genome shotgun sequence
Length = 7308
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 1745 atggcggcggccggcggcgaga 1724
>gb|CH401260.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000097
genomic scaffold, whole genome shotgun sequence
Length = 385661
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 276175 atggcggcggccggcggcgaga 276154
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 6660729 atggcggcggccggcggcgaga 6660708
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 7077631 atggcggcggccggcggcgaga 7077610
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08
map C827S, complete sequence
Length = 137870
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 104924 atggcggcggccggcggcgaga 104945
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 7143602 atggcggcggccggcggcgaga 7143581
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1103C09
Length = 163996
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 116428 ggcggcggccggcggcgagaa 116448
>gb|AACV01001747.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001747, whole
genome shotgun sequence
Length = 9944
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 6271 ggcggcggccggcggcgagaa 6251
>gb|AACV01008426.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008426,
whole genome shotgun sequence
Length = 3019
Score = 42.1 bits (21), Expect = 0.40
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgagaacagc 48
|||||||||||||||||||| ||||
Sbjct: 788 ggcggcggccggcggcgagagcagc 764
>gb|AACV01009479.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009479, whole
genome shotgun sequence
Length = 7839
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 23 tggcggcggccggcggcgaga 43
|||||||||||||||||||||
Sbjct: 1692 tggcggcggccggcggcgaga 1672
>gb|AACV01010765.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010765, whole
genome shotgun sequence
Length = 49043
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 12687 ggcggcggccggcggcgagaa 12667
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 23469447 ggcggcggccggcggcgagaa 23469467
>ref|NT_079858.2| Oryza sativa (japonica cultivar-group)
Length = 2468003
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 tggcggcggccggcggcgaga 43
|||||||||||||||||||||
Sbjct: 718455 tggcggcggccggcggcgaga 718475
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,161,629
Number of Sequences: 438736
Number of extensions: 1161629
Number of successful extensions: 15472
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14707
Number of HSP's gapped (non-prelim): 751
length of query: 712
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 691
effective length of database: 2,791,206,460
effective search space: 1928723663860
effective search space used: 1928723663860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)