BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804958.2.1
(1118 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA... 694 0.0
dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA... 694 0.0
dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA... 694 0.0
ref|XM_473529.1| Oryza sativa (japonica cultivar-group), p... 694 0.0
dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA... 571 e-160
dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA... 571 e-160
gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing t... 436 e-119
gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (j... 404 e-110
gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (j... 373 e-100
gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (j... 369 2e-099
gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (j... 323 1e-085
dbj|AK102911.1| Oryza sativa (japonica cultivar-group) cDNA... 315 3e-083
gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (j... 307 7e-081
gb|CB649652.1|CB649652 OSJNEb13L12.f OSJNEb Oryza sativa (j... 303 1e-079
gb|CF324480.1|CF324480 HDN--06-K11.g1 OsHDAC1-overexpressin... 264 9e-068
gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing t... 258 6e-066
gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (j... 252 4e-064
dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA... 222 3e-055
dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA... 222 3e-055
gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature lea... 214 8e-053
gb|AU183854.1|AU183854 AU183854 Rice immature leaf includin... 214 8e-053
dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA... 214 8e-053
ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA 206 2e-050
gb|CF324395.1|CF324395 HDN--06-G18.g1 OsHDAC1-overexpressin... 202 3e-049
gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (j... 200 1e-048
dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAG... 198 5e-048
dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA... 198 5e-048
gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (ja... 184 7e-044
gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature lea... 172 3e-040
gb|CF326620.1|CF326620 JMT1--06-J03.g1 AtJMT-overexpressing... 155 6e-035
gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (j... 135 6e-029
gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germinati... 135 6e-029
gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (j... 135 6e-029
gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (j... 135 6e-029
dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPN... 135 6e-029
gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (j... 127 1e-026
gb|AU101021.1|AU101021 AU101021 Rice callus Oryza sativa (j... 121 9e-025
dbj|AP004188.3| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 119 3e-024
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) c... 111 8e-022
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 111 8e-022
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 111 8e-022
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|AU225409.1|AU225409 AU225409 Oryza sativa Koshihikari pi... 100 3e-018
gb|AU030917.1|AU030917 AU030917 Rice cDNA from immature lea... 94 2e-016
dbj|AG207806.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AG208868.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AG209441.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AG021353.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AG023794.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AP004813.1| Oryza sativa (japonica cultivar-group) chro... 88 1e-014
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 88 1e-014
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|AACV01014978.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
dbj|AK106247.1| Oryza sativa (japonica cultivar-group) cDNA... 84 2e-013
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AACV01005685.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|XM_464271.1| Oryza sativa (japonica cultivar-group), mRNA 84 2e-013
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|AU075754.1|AU075754 AU075754 Rice cDNA from immature lea... 74 2e-010
gb|AU101467.1|AU101467 AU101467 Rice immature leaf includin... 74 2e-010
gb|AU182303.1|AU182303 AU182303 Rice panicle at flowering s... 74 2e-010
gb|CF327924.1|CF327924 NACL--02-J19.b1 Rice callus plasmid ... 74 2e-010
gb|CF327925.1|CF327925 NACL--02-J19.g1 Rice callus plasmid ... 74 2e-010
gb|AU165901.1|AU165901 AU165901 Rice cDNA from immature lea... 70 3e-009
ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA 70 3e-009
dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA,... 68 1e-008
dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chro... 68 1e-008
dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AP004236.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 68 1e-008
gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_469312.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
dbj|AG208112.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
dbj|AG208421.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
dbj|AG211809.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
dbj|AG215017.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
dbj|AG206147.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 ... 66 4e-008
gb|AACV01008101.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA 66 4e-008
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 66 4e-008
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AG206476.1| Oryza sativa (japonica cultivar-group) DNA,... 58 1e-005
dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09... 58 1e-005
gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09... 58 1e-005
gb|AACV01007652.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01008058.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_469311.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CA755233.1|CA755233 BR030016000_PLATE_B01_2_010.ab1 OA O... 54 2e-004
dbj|AG211218.1| Oryza sativa (japonica cultivar-group) DNA,... 52 7e-004
dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA,... 52 7e-004
gb|C26544.1|C26544 C26544 Rice callus cDNA Oryza sativa (ja... 52 7e-004
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
dbj|AP005071.3| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
gb|AACV01003428.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 52 7e-004
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
gb|AQ330797.1|AQ330797 nbxb0047N18r CUGI Rice BAC Library O... 48 0.010
dbj|AG211936.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.010
dbj|AB157645.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.010
dbj|AK069685.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
gb|AC135597.5| Oryza sativa chromosome 3 BAC OSJNBa0034E08 ... 48 0.010
dbj|AP003806.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
dbj|AP004347.5| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|AACV01007049.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
gb|AACV01016147.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
ref|XM_468898.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.010
ref|NT_107184.1| Oryza sativa (japonica cultivar-group) 48 0.010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.010
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|CB671414.1|CB671414 OSJNEe04P24.r OSJNEe Oryza sativa (j... 44 0.16
dbj|AP005877.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP005179.4| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AACV01009608.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01015319.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.16
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full
insert sequence
Length = 3746
Score = 694 bits (350), Expect = 0.0
Identities = 668/777 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2626 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2685
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 2686 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 2745
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 2746 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 2805
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 2806 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 2865
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 2866 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 2925
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || || || |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 2926 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttg 2985
Query: 399 tgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtca 458
||| || |||| | |||| |||||||||||||| ||||| ||||||||| |||| ||
Sbjct: 2986 tgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggca 3045
Query: 459 tcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaa 518
|||||| ||||||||||||||||||||||| || | ||| |||| |||| ||| || ||
Sbjct: 3046 tcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaa 3105
Query: 519 catactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttcta 578
||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 3106 cattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttcta 3165
Query: 579 cctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtg 638
|||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 3166 cctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtg 3225
Query: 639 ggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacac 698
|||||||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||
Sbjct: 3226 ggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacac 3285
Query: 699 gtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggc 758
|||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 3286 gtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggc 3345
Query: 759 agccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 3346 agccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggc 3402
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 3483 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 3531
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full
insert sequence
Length = 3746
Score = 694 bits (350), Expect = 0.0
Identities = 668/777 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2541 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2600
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 2601 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 2660
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 2661 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 2720
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 2721 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 2780
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 2781 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 2840
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || || || |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 2841 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttg 2900
Query: 399 tgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtca 458
||| || |||| | |||| |||||||||||||| ||||| ||||||||| |||| ||
Sbjct: 2901 tgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggca 2960
Query: 459 tcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaa 518
|||||| ||||||||||||||||||||||| || | ||| |||| |||| ||| || ||
Sbjct: 2961 tcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaa 3020
Query: 519 catactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttcta 578
||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 3021 cattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttcta 3080
Query: 579 cctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtg 638
|||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 3081 cctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtg 3140
Query: 639 ggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacac 698
|||||||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||
Sbjct: 3141 ggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacac 3200
Query: 699 gtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggc 758
|||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 3201 gtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggc 3260
Query: 759 agccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 3261 agccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggc 3317
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 3398 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 3446
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full
insert sequence
Length = 3641
Score = 694 bits (350), Expect = 0.0
Identities = 668/777 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2443 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2502
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 2503 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 2562
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 2563 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 2622
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 2623 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 2682
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 2683 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 2742
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || || || |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 2743 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttg 2802
Query: 399 tgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtca 458
||| || |||| | |||| |||||||||||||| ||||| ||||||||| |||| ||
Sbjct: 2803 tgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggca 2862
Query: 459 tcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaa 518
|||||| ||||||||||||||||||||||| || | ||| |||| |||| ||| || ||
Sbjct: 2863 tcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaa 2922
Query: 519 catactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttcta 578
||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 2923 cattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttcta 2982
Query: 579 cctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtg 638
|||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 2983 cctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtg 3042
Query: 639 ggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacac 698
|||||||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||
Sbjct: 3043 ggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacac 3102
Query: 699 gtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggc 758
|||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 3103 gtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggc 3162
Query: 759 agccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 3163 agccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggc 3219
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 3300 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 3348
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3306
Score = 694 bits (350), Expect = 0.0
Identities = 668/777 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2403 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2462
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 2463 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 2522
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 2523 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 2582
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 2583 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 2642
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 2643 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 2702
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || || || |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 2703 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttg 2762
Query: 399 tgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtca 458
||| || |||| | |||| |||||||||||||| ||||| ||||||||| |||| ||
Sbjct: 2763 tgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggca 2822
Query: 459 tcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaa 518
|||||| ||||||||||||||||||||||| || | ||| |||| |||| ||| || ||
Sbjct: 2823 tcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaa 2882
Query: 519 catactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttcta 578
||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 2883 cattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttcta 2942
Query: 579 cctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtg 638
|||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 2943 cctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtg 3002
Query: 639 ggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacac 698
|||||||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||
Sbjct: 3003 ggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacac 3062
Query: 699 gtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggc 758
|||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 3063 gtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggc 3122
Query: 759 agccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 3123 agccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggc 3179
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaa 933
||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 3260 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaa 3306
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full
insert sequence
Length = 3747
Score = 571 bits (288), Expect = e-160
Identities = 618/731 (84%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2556 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 2615
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|| ||||||| |||||||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct: 2616 gttgttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacag 2675
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| |||||||||||||||| || |||||| ||||||| |||| ||
Sbjct: 2676 gcccatcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagagga 2735
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||||| |||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 2736 actgtaagtggtggaatgatcagagagcttctcatttctttcaagagggcaactggacag 2795
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| ||||||| ||||| ||||||||||| |||||||| ||||| || || || |||
Sbjct: 2796 aaaccccagaggattatattttacagggatggtgtcagtgaaggacagttttatcaggtt 2855
Query: 364 ctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccag 423
||||| ||||| |||||||||||||||||||| ||||| || ||||| | || || |||
Sbjct: 2856 ctgttttatgagcttgatgccattagaaaggcatgtgcatctttggaagccgattatcag 2915
Query: 424 cctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataat 483
|| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 2916 ccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaataac 2975
Query: 484 cacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggac 543
||||| || | || |||| || | ||| || || ||||| || ||||| ||||| ||
Sbjct: 2976 cacaaggaccagcgcactgttgacagaagtggaaatatactaccaggcaccgtggttgat 3035
Query: 544 tcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcag 603
|| ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 3036 tcaaagatatgccatcctactgagtttgatttctacctgtgtagccatgcgggcattcag 3095
Query: 604 ggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgat 663
|||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 3096 ggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctgat 3155
Query: 664 gggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagta 723
|| ||||||||||| || ||||||||||| ||||| ||||| |||||||| || || |||
Sbjct: 3156 ggtttgcaaactctgacaaacaacttgtgctacacctatgcaaggtgcacccgttccgta 3215
Query: 724 tcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatg 783
|| || |||||||||||||| ||||| || || || || || |||||||| || ||||||
Sbjct: 3216 tcaatcgttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatg 3275
Query: 784 gagccagatac 794
||||| |||||
Sbjct: 3276 gagccggatac 3286
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 3368 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 3427
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 3428 ctactgctaag 3438
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full
insert sequence
Length = 2043
Score = 571 bits (288), Expect = e-160
Identities = 618/731 (84%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 995 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 1054
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|| ||||||| |||||||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct: 1055 gttgttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacag 1114
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| |||||||||||||||| || |||||| ||||||| |||| ||
Sbjct: 1115 gcccatcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagagga 1174
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||||| |||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 1175 actgtaagtggtggaatgatcagagagcttctcatttctttcaagagggcaactggacag 1234
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| ||||||| ||||| ||||||||||| |||||||| ||||| || || || |||
Sbjct: 1235 aaaccccagaggattatattttacagggatggtgtcagtgaaggacagttttatcaggtt 1294
Query: 364 ctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccag 423
||||| ||||| |||||||||||||||||||| ||||| || ||||| | || || |||
Sbjct: 1295 ctgttttatgagcttgatgccattagaaaggcatgtgcatctttggaagccgattatcag 1354
Query: 424 cctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataat 483
|| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 1355 ccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaataac 1414
Query: 484 cacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggac 543
||||| || | || |||| || | ||| || || ||||| || ||||| ||||| ||
Sbjct: 1415 cacaaggaccagcgcactgttgacagaagtggaaatatactaccaggcaccgtggttgat 1474
Query: 544 tcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcag 603
|| ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 1475 tcaaagatatgccatcctactgagtttgatttctacctgtgtagccatgcgggcattcag 1534
Query: 604 ggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgat 663
|||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 1535 ggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctgat 1594
Query: 664 gggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagta 723
|| ||||||||||| || ||||||||||| ||||| ||||| |||||||| || || |||
Sbjct: 1595 ggtttgcaaactctgacaaacaacttgtgctacacctatgcaaggtgcacccgttccgta 1654
Query: 724 tcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatg 783
|| || |||||||||||||| ||||| || || || || || |||||||| || ||||||
Sbjct: 1655 tcaatcgttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatg 1714
Query: 784 gagccagatac 794
||||| |||||
Sbjct: 1715 gagccggatac 1725
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 1807 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 1866
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 1867 ctactgctaag 1877
>gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 602
Score = 436 bits (220), Expect = e-119
Identities = 480/567 (84%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 167 gattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaaggtatggc 226
||||||||||||| ||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 33 gattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaaagtatggc 92
Query: 227 aagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcatatctttct 286
|||| || | || || ||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 93 aagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcatttctttca 152
Query: 287 ggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgtcagtgagg 346
|||||| |||||||||||||| ||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 153 agagggctactggacagaaacctcagaggataatattttacagggatggtgtcagcgagg 212
Query: 347 gacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctgtgcgtcat 406
| || || || |||||| |||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 213 ggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttgtgcatccc 272
Query: 407 tggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtcatcacacca 466
|||| | |||| |||||||||||||| ||||| ||||||||| |||| |||||||| |
Sbjct: 273 tggaacccaactatcagcctccagttacctttgtggtggtccagaagcggcatcacacaa 332
Query: 467 gg-ttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactg 525
|| |||||||||||||||||||| || | ||| |||| |||| ||| || ||||| |||
Sbjct: 333 gggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctg 392
Query: 526 cctggcac-tgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtg 584
||||| || ||| || | ||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 393 cctggaacntgttgttgtctcaaagatttgccatccaaccgagtttgatttctacctgtg 452
Query: 585 cagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatga 644
|||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||
Sbjct: 453 tagccatgctggcatacagggaacaggccgtcctgctcattatcatgttctgtgggatga 512
Query: 645 gaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgc 704
|||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 513 gaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacacgtatgc 572
Query: 705 taggtgcacacgctcagtatcgattgt 731
|||||||| ||||| ||||| |||||
Sbjct: 573 aaggtgcactcgctctgtatcaattgt 599
>gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F17 5', mRNA sequence
Length = 788
Score = 404 bits (204), Expect = e-110
Identities = 347/395 (87%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
|||||||||||||| ||||| ||||||||| |||| |||||||| |||||||||||||||
Sbjct: 788 cagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttgctaat 729
Query: 481 aatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtg 540
|||||||| || | ||| |||| |||| ||| || ||||| |||||||| ||||| ||
Sbjct: 728 aatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctggaactgttgtt 669
Query: 541 gactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 668 gactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccatgctggcata 609
Query: 601 cagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggct 660
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 608 cagggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgca 549
Query: 661 gatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctca 720
|| | ||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 548 gacgagttgcaaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctct 489
Query: 721 gtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctac 780
||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| || |||
Sbjct: 488 gtatcaattgtgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttac 429
Query: 781 atggagccagatacgagtgacagtggatctatggc 815
||||||||||| || |||||||||||| |||||
Sbjct: 428 atggagccagagacatctgacagtggatcaatggc 394
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 313 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 265
>gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03A22 3', mRNA sequence
Length = 744
Score = 373 bits (188), Expect = e-100
Identities = 325/371 (87%)
Strand = Plus / Minus
Query: 445 gtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtc 504
|||||| |||| |||||||| ||||||||||||||||||||||| || | ||| ||||
Sbjct: 744 gtccagaagcggcatcacacaaggttgtttgctaataatcacaacgaccagcgtactgtt 685
Query: 505 gataaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaact 564
|||| ||| || ||||| |||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 684 gatagaagtggaaacattctgcctggaactgttgttgactcaaagatttgccatccaacc 625
Query: 565 gagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccat 624
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct: 624 gagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcat 565
Query: 625 taccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaac 684
|| ||||||||||||||||||||||| ||||| || || | ||||||||| ||||| |||
Sbjct: 564 tatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaac 505
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
|||||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||||| |||
Sbjct: 504 aacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtac 445
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagt 804
|||||||| |||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct: 444 tatgctcatctggcagccttccgagctcgcttttacatggagccagagacatttgacagt 385
Query: 805 ggatctatggc 815
||||| |||||
Sbjct: 384 ggatcaatggc 374
Score = 71.9 bits (36), Expect = 7e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 880 aggccattacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 300 aggcctttacctgctttcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 245
>gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09L10 3', mRNA sequence
Length = 771
Score = 369 bits (186), Expect = 2e-099
Identities = 323/369 (87%)
Strand = Plus / Minus
Query: 447 ccagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcga 506
|||| |||| |||||||| ||||||||||||||||||||||| || | ||| |||| ||
Sbjct: 771 ccagaagcggcatcacacaaggttgtttgctaataatcacaacgaccagcgtactgttga 712
Query: 507 taaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactga 566
|| ||| || ||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||
Sbjct: 711 tagaagtggaaacattctgcctggaactgttgttgactcaaagatttgccatccaaccga 652
Query: 567 gtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccatta 626
|||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 651 gtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcatta 592
Query: 627 ccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaa 686
||||||||||||||||||||||| ||||| || || | ||||||||| ||||| |||||
Sbjct: 591 tcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaa 532
Query: 687 cttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatacta 746
|||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct: 531 cttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtacta 472
Query: 747 tgctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtgg 806
|||||| |||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct: 471 tgctcatctggcagccttccgagctcgcttttacatggagccagagacatctgacagtgg 412
Query: 807 atctatggc 815
||| |||||
Sbjct: 411 atcaatggc 403
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 322 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 274
>gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E11 3', mRNA sequence
Length = 825
Score = 323 bits (163), Expect = 1e-085
Identities = 367/434 (84%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 361 gttctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactac 420
|||||||| ||||| |||||||||||||||||||| ||||| || ||||| | || ||
Sbjct: 814 gttctgttttatgagcttgatgccattagaaaggcatgtgcatc-ttggaagccgattat 756
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 755 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 696
Query: 481 aatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtg 540
|| ||||| || | || |||| || | ||| || || ||||| || ||||| |||||
Sbjct: 695 aaccacaaggaccagcgcactgttgacagaagtggaaatatactaccaggcaccgtggtt 636
Query: 541 gactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
|| || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 635 gattcaaagatatgccatcctactgagtttgatttctacctgtgtagccatgcgggcatt 576
Query: 601 cagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggct 660
||||||||||| |||||||| ||||| ||||||||||||||||||||||| || || |||
Sbjct: 575 cagggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgct 516
Query: 661 gatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctca 720
||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 515 gatggtttgcaaactctgacaaacaacttgtgctacacctatgcaaggtgcacccgttcc 456
Query: 721 gtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctac 780
||||| || |||||||||||||| ||||| || || || || || |||||||| || |||
Sbjct: 455 gtatcaatcgttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttac 396
Query: 781 atggagccagatac 794
|||||||| |||||
Sbjct: 395 atggagccggatac 382
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 300 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 241
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 240 ctactgctaag 230
>dbj|AK102911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J23, full
insert sequence
Length = 2997
Score = 315 bits (159), Expect = 3e-083
Identities = 310/363 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2627 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2686
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 2687 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 2746
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 2747 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 2806
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 2807 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 2866
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 2867 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 2926
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || || || |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 2927 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttg 2986
Query: 399 tgc 401
|||
Sbjct: 2987 tgc 2989
>gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C12 3', mRNA sequence
Length = 701
Score = 307 bits (155), Expect = 7e-081
Identities = 263/299 (87%)
Strand = Plus / Minus
Query: 517 aacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttc 576
||||| |||||||| ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 688 aacattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttt 629
Query: 577 tacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctg 636
|||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct: 628 tacctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctg 569
Query: 637 tgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttac 696
|||||||||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||
Sbjct: 568 tgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctac 509
Query: 697 acgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctg 756
|||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||
Sbjct: 508 acgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatttg 449
Query: 757 gcagccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 448 gcagccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggc 390
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 309 tacctgctttcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 261
>gb|CB649652.1|CB649652 OSJNEb13L12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13L12 5', mRNA sequence
Length = 848
Score = 303 bits (153), Expect = 1e-079
Identities = 301/353 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 484 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 543
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 544 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 603
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 604 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 663
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 664 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 723
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 724 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 783
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaa 391
||| ||||| || || || |||||| |||||||||| ||||||||||||||||
Sbjct: 784 cagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaa 836
>gb|CF324480.1|CF324480 HDN--06-K11.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-K11, mRNA sequence
Length = 497
Score = 264 bits (133), Expect = 9e-068
Identities = 263/309 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 182 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 241
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||
Sbjct: 242 agattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaa 301
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 302 gtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaa 361
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||| || | || || ||||| ||||||||||||||| ||||||||||||
Sbjct: 362 agtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcat 421
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct: 422 ttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgt 481
Query: 339 cagtgaggg 347
||| |||||
Sbjct: 482 cagcgaggg 490
>gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 661
Score = 258 bits (130), Expect = 6e-066
Identities = 256/294 (87%), Gaps = 3/294 (1%)
Strand = Plus / Minus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaa-ctgagtttgatttctacctg 582
||||||| ||||| || | ||| ||||| |||||||||| | |||||| |||||||||||
Sbjct: 661 tgcctggaactgttgttgtctcaaagatttgccatccaaaccgagttt-atttctacctg 603
Query: 583 tgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggat 642
|| |||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct: 602 tgtagccatgctggcatacagggaacaggccgtcctgctcattatcatgttctgtgggat 543
Query: 643 gagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtat 702
|||||||| ||||| || || | ||||||||| ||||| ||||||||||| |||||||||
Sbjct: 542 gagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacacgtat 483
Query: 703 gctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcc 762
|| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 482 gcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggcagcc 423
Query: 763 ttccgag-ctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||| |||| || |||||||||||||| || |||||||||||| |||||
Sbjct: 422 ttccgagtctcgcttttacatggagccagagacatctgacagtggatcaatggc 369
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 287 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 239
>gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12F14 3', mRNA sequence
Length = 720
Score = 252 bits (127), Expect = 4e-064
Identities = 238/275 (86%)
Strand = Plus / Minus
Query: 520 atactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctac 579
||||| || ||||| ||||| || || ||||| |||||||| ||||||||||||||||||
Sbjct: 665 atactaccaggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctac 606
Query: 580 ctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgg 639
||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 605 ctgtgtagccatgcgggcattcagggaacaagtcgccctgcacattatcatgttctgtgg 546
Query: 640 gatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacg 699
||||||||||| || || |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 545 gatgagaacaagttcactgctgatggtttgcaaactctgacaaacaacttgtgctacacc 486
Query: 700 tatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggca 759
||||| |||||||| || || ||||| || |||||||||||||| ||||| || || ||
Sbjct: 485 tatgcaaggtgcacccgttccgtatcaatcgttcctcctgcatattatgcccatctcgcg 426
Query: 760 gccttccgagctcggttctacatggagccagatac 794
|| || |||||||| || ||||||||||| |||||
Sbjct: 425 gcatttcgagctcgattttacatggagccggatac 391
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 309 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 250
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 249 ctactgctaag 239
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full
insert sequence
Length = 3638
Score = 222 bits (112), Expect = 3e-055
Identities = 238/280 (85%)
Strand = Plus / Plus
Query: 514 gggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgat 573
||||||||| ||||||| ||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 2917 gggaacatattgcctggtactgttgttgactccaagatttgccatcctacggagtttgac 2976
Query: 574 ttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgtt 633
|||| | |||||||||||||||| || |||| |||||||| || || |||||||| ||
Sbjct: 2977 ttcttcttgtgcagccatgctggaatcaagggcacaagccgtcccgctcattaccacgtc 3036
Query: 634 ctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgt 693
||||||||||| |||||||| || ||||||| |||||| || |||||||||||| | |||
Sbjct: 3037 ctgtgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaacaacctctgt 3096
Query: 694 tacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcac 753
||||| ||||| ||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 3097 tacacttatgcgaggtgcacacgatccgtatctattgttccaccagcatactatgctcat 3156
Query: 754 ctggcagccttccgagctcggttctacatggagccagata 793
||||| || ||| |||| || |||||||||||| ||||||
Sbjct: 3157 ctggcggcgttcagagcccgtttctacatggagtcagata 3196
Score = 60.0 bits (30), Expect = 3e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 55 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 114
|||||||| || ||||||||||| |||||||| || ||||| |||||| || || |||
Sbjct: 2458 actattatattcggtgctgatgtcacccatcctcaccctggcgaagatagcagcccatcc 2517
Query: 115 attgcagctgtggttgcttttcaagactggcctgaggttacaaagtatgc 164
||||| ||||| || || | ||||| |||||||| || |||||||||||
Sbjct: 2518 attgctgctgttgtggcctcccaagattggcctgaagtgacaaagtatgc 2567
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full
insert sequence
Length = 1312
Score = 222 bits (112), Expect = 3e-055
Identities = 238/280 (85%)
Strand = Plus / Plus
Query: 514 gggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgat 573
||||||||| ||||||| ||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 603 gggaacatattgcctggtactgttgttgactccaagatttgccatcctacggagtttgac 662
Query: 574 ttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgtt 633
|||| | |||||||||||||||| || |||| |||||||| || || |||||||| ||
Sbjct: 663 ttcttcttgtgcagccatgctggaatcaagggcacaagccgtcccgctcattaccacgtc 722
Query: 634 ctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgt 693
||||||||||| |||||||| || ||||||| |||||| || |||||||||||| | |||
Sbjct: 723 ctgtgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaacaacctctgt 782
Query: 694 tacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcac 753
||||| ||||| ||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 783 tacacttatgcgaggtgcacacgatccgtatctattgttccaccagcatactatgctcat 842
Query: 754 ctggcagccttccgagctcggttctacatggagccagata 793
||||| || ||| |||| || |||||||||||| ||||||
Sbjct: 843 ctggcggcgttcagagcccgtttctacatggagtcagata 882
>gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50118_1A, mRNA sequence
Length = 328
Score = 214 bits (108), Expect = 8e-053
Identities = 183/208 (87%)
Strand = Plus / Plus
Query: 608 caagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggt 667
||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || || | ||
Sbjct: 1 caagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcagacgagt 60
Query: 668 tgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcga 727
||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct: 61 tgcaaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaa 120
Query: 728 ttgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagc 787
|||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 121 ttgtgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagc 180
Query: 788 cagatacgagtgacagtggatctatggc 815
|||| || |||||||||||| |||||
Sbjct: 181 cagagacatctgacagtggatcaatggc 208
>gb|AU183854.1|AU183854 AU183854 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50133, mRNA sequence
Length = 445
Score = 214 bits (108), Expect = 8e-053
Identities = 183/208 (87%)
Strand = Plus / Plus
Query: 608 caagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggt 667
||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || || | ||
Sbjct: 1 caagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcagacgagt 60
Query: 668 tgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcga 727
||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct: 61 tgcaaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaa 120
Query: 728 ttgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagc 787
|||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 121 ttgtgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagc 180
Query: 788 cagatacgagtgacagtggatctatggc 815
|||| || |||||||||||| |||||
Sbjct: 181 cagagacatctgacagtggatcaatggc 208
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 289 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 337
>dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full
insert sequence
Length = 3644
Score = 214 bits (108), Expect = 8e-053
Identities = 237/280 (84%)
Strand = Plus / Plus
Query: 514 gggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgat 573
||||||||| ||||||| ||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 2936 gggaacatattgcctggtactgttgttgactccaagatttgccatcctacggagtttgac 2995
Query: 574 ttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgtt 633
|||| | |||||||||||||||| || |||| ||||||| || || |||||||| ||
Sbjct: 2996 ttcttcttgtgcagccatgctggaatcaagggcacaagccatcccgctcattaccacgtc 3055
Query: 634 ctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgt 693
||||||||||| |||||||| || ||||||| |||||| || |||||||||||| | |||
Sbjct: 3056 ctgtgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaacaacctctgt 3115
Query: 694 tacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcac 753
||||| ||||| ||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 3116 tacacttatgcgaggtgcacacgatccgtatctattgttccaccagcatactatgctcat 3175
Query: 754 ctggcagccttccgagctcggttctacatggagccagata 793
||||| || ||| |||| || |||||||||||| ||||||
Sbjct: 3176 ctggcggcgttcagagcccgtttctacatggagtcagata 3215
Score = 60.0 bits (30), Expect = 3e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 55 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 114
|||||||| || ||||||||||| |||||||| || ||||| |||||| || || |||
Sbjct: 2477 actattatattcggtgctgatgtcacccatcctcaccctggcgaagatagcagcccatcc 2536
Query: 115 attgcagctgtggttgcttttcaagactggcctgaggttacaaagtatgc 164
||||| ||||| || || | ||||| |||||||| || |||||||||||
Sbjct: 2537 attgctgctgttgtggcctcccaagattggcctgaagtgacaaagtatgc 2586
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3430
Score = 206 bits (104), Expect = 2e-050
Identities = 239/284 (84%)
Strand = Plus / Plus
Query: 511 agcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagttt 570
|||||||||||||| ||||| || || || || || |||||||| |||||||||||||||
Sbjct: 2745 agcgggaacatactccctggtacggttgtagattcaaagatctgtcatccaactgagttt 2804
Query: 571 gatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccat 630
|| ||||||||||| ||||||||||||||| |||| || || || || || ||||| |||
Sbjct: 2805 gacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcattatcat 2864
Query: 631 gttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttg 690
|| |||||||||| |||||||| || ||||||| ||||| | ||| ||||||||| |
Sbjct: 2865 gtcttgtgggatgaaaacaacttcacagctgatgcattgcagattcttaccaacaacctt 2924
Query: 691 tgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgct 750
|| ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||||
Sbjct: 2925 tgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttattatgct 2984
Query: 751 cacctggcagccttccgagctcggttctacatggagccagatac 794
|| ||||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 2985 catctggctgccttccgtgctcgtttctatatggaaccagatac 3028
Score = 69.9 bits (35), Expect = 3e-009
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 58 attatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttccatt 117
||||| |||||||||||||| |||||||| |||||||| || || ||||| || |||
Sbjct: 2292 attatatttggtgctgatgttacccatcctcatcctggagaggacagcagtccctcaatt 2351
Query: 118 gcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagt 177
|| ||||| || || | ||||| ||||||||||| ||||||||||| || ||||| |
Sbjct: 2352 gctgctgttgtagcctcccaagattggcctgaggtgacaaagtatgctgggttggtttct 2411
Query: 178 gctcaagccca 188
|||||||||||
Sbjct: 2412 gctcaagccca 2422
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 319 atattctacagggatggcgtcagtgagggacaattctaccaagttct 365
||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 2553 atattttacagggatggcgttagtgaaggccaattttaccaagttct 2599
>gb|CF324395.1|CF324395 HDN--06-G18.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-G18, mRNA sequence
Length = 424
Score = 202 bits (102), Expect = 3e-049
Identities = 202/238 (84%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 187 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 246
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|| ||||||| |||||||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct: 247 gttgttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacag 306
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| |||||||||||||||| || |||||| ||||||| |||| ||
Sbjct: 307 gcccatcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagagga 366
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggac 301
||||| |||||| |||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 367 actgtaagtggtggaatgatcagagagcttctcatttctttcaagagggcaactggac 424
>gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14L01 5', mRNA sequence
Length = 338
Score = 200 bits (101), Expect = 1e-048
Identities = 179/205 (87%)
Strand = Plus / Plus
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|||| ||||| ||||| ||||||||||||||||||||||| ||||| || | | |||||
Sbjct: 30 gccggcctgctcattatcatgttctgtgggatgagaacaaatttactgcacacgagttgc 89
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| ||||
Sbjct: 90 aaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattg 149
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
| |||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 150 tgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccag 209
Query: 791 atacgagtgacagtggatctatggc 815
| || |||||||||||| |||||
Sbjct: 210 agacatctgacagtggatcaatggc 234
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1
homologous protein, complete cds
Length = 3306
Score = 198 bits (100), Expect = 5e-048
Identities = 238/284 (83%)
Strand = Plus / Plus
Query: 511 agcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagttt 570
|||||||||||||| ||||| || || || || || |||||||| |||||||||||||||
Sbjct: 2596 agcgggaacatactccctggtacggttgtagattcaaagatctgtcatccaactgagttt 2655
Query: 571 gatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccat 630
|| ||||||||||| ||||||||||||||| |||| || || || || || ||||| |||
Sbjct: 2656 gacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcattatcat 2715
Query: 631 gttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttg 690
|| ||||| |||| |||||||| || ||||||| ||||| | ||| ||||||||| |
Sbjct: 2716 gtcttgtggaatgaaaacaacttcacagctgatgcattgcagattcttaccaacaacctt 2775
Query: 691 tgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgct 750
|| ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||||
Sbjct: 2776 tgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttattatgct 2835
Query: 751 cacctggcagccttccgagctcggttctacatggagccagatac 794
|| ||||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 2836 catctggctgccttccgtgctcgtttctatatggaaccagatac 2879
Score = 69.9 bits (35), Expect = 3e-009
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 58 attatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttccatt 117
||||| |||||||||||||| |||||||| |||||||| || || ||||| || |||
Sbjct: 2143 attatatttggtgctgatgttacccatcctcatcctggagaggacagcagtccctcaatt 2202
Query: 118 gcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagt 177
|| ||||| || || | ||||| ||||||||||| ||||||||||| || ||||| |
Sbjct: 2203 gctgctgttgtagcctcccaagattggcctgaggtgacaaagtatgctgggttggtttct 2262
Query: 178 gctcaagccca 188
|||||||||||
Sbjct: 2263 gctcaagccca 2273
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 319 atattctacagggatggcgtcagtgagggacaattctaccaagttct 365
||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 2404 atattttacagggatggcgttagtgaaggccaattttaccaagttct 2450
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full
insert sequence
Length = 3432
Score = 198 bits (100), Expect = 5e-048
Identities = 238/284 (83%)
Strand = Plus / Plus
Query: 511 agcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgagttt 570
|||||||||||||| ||||| || || || || || |||||| | |||||||||||||||
Sbjct: 2745 agcgggaacatactccctggtacggttgtagattcaaagatccgtcatccaactgagttt 2804
Query: 571 gatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccat 630
|| ||||||||||| ||||||||||||||| |||| || || || || || ||||| |||
Sbjct: 2805 gacttctacctgtgtagccatgctggcattaagggtactagtcgtccagctcattatcat 2864
Query: 631 gttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttg 690
|| |||||||||| |||||||| || ||||||| ||||| | ||| ||||||||| |
Sbjct: 2865 gtcttgtgggatgaaaacaacttcacagctgatgcattgcagattcttaccaacaacctt 2924
Query: 691 tgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgct 750
|| ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||||
Sbjct: 2925 tgctacacctatgcaaggtgcactcgctctgtatcaattgttccacctgcttattatgct 2984
Query: 751 cacctggcagccttccgagctcggttctacatggagccagatac 794
|| ||||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 2985 catctggctgccttccgtgctcgtttctatatggaaccagatac 3028
Score = 69.9 bits (35), Expect = 3e-009
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 58 attatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttccatt 117
||||| |||||||||||||| |||||||| |||||||| || || ||||| || |||
Sbjct: 2292 attatatttggtgctgatgttacccatcctcatcctggagaggacagcagtccctcaatt 2351
Query: 118 gcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagt 177
|| ||||| || || | ||||| ||||||||||| ||||||||||| || ||||| |
Sbjct: 2352 gctgctgttgtagcctcccaagattggcctgaggtgacaaagtatgctgggttggtttct 2411
Query: 178 gctcaagccca 188
|||||||||||
Sbjct: 2412 gctcaagccca 2422
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 319 atattctacagggatggcgtcagtgagggacaattctaccaagttct 365
||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 2553 atattttacagggatggcgttagtgaaggccaattttaccaagttct 2599
>gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63231_1A, mRNA sequence
Length = 334
Score = 184 bits (93), Expect = 7e-044
Identities = 209/248 (84%)
Strand = Plus / Plus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcaggga 606
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 37 aagatctgtcatccaactgagtttgacttctacctgtgtagccatgctggcattaagggt 96
Query: 607 acaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatggg 666
|| || || || || ||||| ||||| |||||||||| |||||||| || |||||||
Sbjct: 97 actagtcgtccagctcattatcatgtcttgtgggatgaaaacaacttcacagctgatgca 156
Query: 667 ttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcg 726
||||| | ||| ||||||||| | || ||||| ||||| |||||||| ||||| |||||
Sbjct: 157 ttgcagattcttaccaacaacctttgctacacctatgcaaggtgcactcgctctgtatca 216
Query: 727 attgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggag 786
|||||||| || || || |||||||| ||||| |||||||| ||||| ||||| |||||
Sbjct: 217 attgttccaccngcttattatgctcatctggctgccttccgtgctcgtttctatatggaa 276
Query: 787 ccagatac 794
||||||||
Sbjct: 277 ccagatac 284
>gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60443_2Z, mRNA sequence
Length = 714
Score = 172 bits (87), Expect = 3e-040
Identities = 195/230 (84%), Gaps = 1/230 (0%)
Strand = Plus / Plus
Query: 565 gagtttgatttctacctgtgcagccatgctggcattcagggaacaagccg-ccctgccca 623
|||||||| |||| | ||||||||||||||| || |||| |||||||| ||| || ||
Sbjct: 27 gagtttgacttcttctngtgcagccatgctggaatcaagggcacaagccgtccccgctca 86
Query: 624 ttaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaa 683
|||||| || ||||||||||| |||||||| || ||||||| |||||| || ||||||||
Sbjct: 87 ttaccacgtcctgtgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaa 146
Query: 684 caacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcata 743
|||| | |||||||| ||||| ||||||||||| || ||||| |||||||| || |||||
Sbjct: 147 caacctctgttacacttatgcgaggtgcacacgatccgtatctattgttccaccagcata 206
Query: 744 ctatgctcacctggcagccttccgagctcggttctacatggagccagata 793
||||||||| ||||| || ||| |||| || |||||||||||| ||||||
Sbjct: 207 ctatgctcatctggcggcgttcagagcccgtttctacatggagtcagata 256
>gb|CF326620.1|CF326620 JMT1--06-J03.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-J03, mRNA sequence
Length = 657
Score = 155 bits (78), Expect = 6e-035
Identities = 139/162 (85%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 494 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 553
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|| ||||||| |||||||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct: 554 gttgttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacag 613
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatgg 225
|||||||| |||||||||||||||| || ||||||
Sbjct: 614 gcccatcgtcaggaattgatacaggatctttttaaagtatgg 655
>gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12560, mRNA sequence
Length = 714
Score = 135 bits (68), Expect = 6e-029
Identities = 218/268 (81%)
Strand = Plus / Plus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||||||||| |
Sbjct: 95 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctct 154
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 155 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 214
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 215 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatg 274
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 275 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 334
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 335 ttcgagcgcggttctacatggagccaga 362
>gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 463
Score = 135 bits (68), Expect = 6e-029
Identities = 218/268 (81%)
Strand = Plus / Plus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||||||||| |
Sbjct: 120 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctct 179
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 180 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 239
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 240 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatg 299
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 300 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 359
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 360 ttcgagcgcggttctacatggagccaga 387
>gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N22 3', mRNA sequence
Length = 813
Score = 135 bits (68), Expect = 6e-029
Identities = 218/268 (81%)
Strand = Plus / Minus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||||||||| |
Sbjct: 660 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctct 601
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 600 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 541
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 540 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatg 481
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 480 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 421
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 420 ttcgagcgcggttctacatggagccaga 393
>gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04I24 3', mRNA sequence
Length = 827
Score = 135 bits (68), Expect = 6e-029
Identities = 218/268 (81%)
Strand = Plus / Minus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||||||||| |
Sbjct: 603 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctct 544
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 543 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 484
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 483 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatg 424
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 423 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 364
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 363 ttcgagcgcggttctacatggagccaga 336
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 322 ttctacagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 805 ttctacagggatggtgtcagtgaaggccaattctaccaagttct 762
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH
homologous protein, complete cds
Length = 3548
Score = 135 bits (68), Expect = 6e-029
Identities = 218/268 (81%)
Strand = Plus / Plus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||||||||| |
Sbjct: 2881 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctct 2940
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 2941 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 3000
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 3001 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatg 3060
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 3061 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 3120
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 3121 ttcgagcgcggttctacatggagccaga 3148
Score = 131 bits (66), Expect = 9e-028
Identities = 259/326 (79%)
Strand = Plus / Plus
Query: 40 gtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctggggaa 99
|||||||||||| | |||||||| |||||||| ||||| || ||||| | | |||||
Sbjct: 2397 gtcagtgacataccaactattatatttggtgcagatgtcacgcatcctgaaaccggggag 2456
Query: 100 gattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaag 159
|| ||||| || |||||||| ||||| ||||| | |||||||||||| || |||||||||
Sbjct: 2457 gactctagcccatccattgctgctgttgttgcatctcaagactggccagaagttacaaag 2516
Query: 160 tatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaag 219
||||| ||||||||| ||||||| || ||||| | || || ||||||| ||||
Sbjct: 2517 tatgctggattggtgtgtgctcaggctcatcggcaagagctcattcaagatctttacaag 2576
Query: 220 gtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcata 279
|||||| ||||| |||| || || || | || ||||||||||||||||| | |||
Sbjct: 2577 acatggcatgatcctcaaagaggcaccgtaacaggaggcatgatcagggagctcttaata 2636
Query: 280 tctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgtc 339
|| ||| ||| ||| ||||| || || ||| ||| || || |||||||||||||| |||
Sbjct: 2637 tccttcaggaaggccactgggcaaaagccattgagaataattttctacagggatggtgtc 2696
Query: 340 agtgagggacaattctaccaagttct 365
||||| || |||||||||||||||||
Sbjct: 2697 agtgaaggccaattctaccaagttct 2722
>gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01O19 3', mRNA sequence
Length = 804
Score = 127 bits (64), Expect = 1e-026
Identities = 217/268 (80%)
Strand = Plus / Minus
Query: 524 tgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgt 583
||||||| ||||| || || || ||||||||||| ||| | ||||||||||| ||||| |
Sbjct: 610 tgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttatacctct 551
Query: 584 gcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatg 643
| ||||||||||| |||||||||||||| | || || || ||||| || || |||||||
Sbjct: 550 gtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatg 491
Query: 644 agaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatg 703
||||||| || || || || | |||| || | || |||||| | || ||||| ||||
Sbjct: 490 agaacaatttcactgcagacgaaatgcagacattgacaaacaacctttggtacacttatg 431
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
| ||||||||||||| || || ||||||| |||||||||||||| || ||||| || |
Sbjct: 430 cacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgt 371
Query: 764 tccgagctcggttctacatggagccaga 791
| ||||| ||||||||||||||||||||
Sbjct: 370 ttcgagcgcggttctacatggagccaga 343
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 330 ggatggcgtcagtgagggacaattctaccaagttct 365
|||||| |||||||| || |||||||||||||||||
Sbjct: 804 ggatggtgtcagtgaaggccaattctaccaagttct 769
>gb|AU101021.1|AU101021 AU101021 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C63231, mRNA sequence
Length = 630
Score = 121 bits (61), Expect = 9e-025
Identities = 208/252 (82%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 547 aagatctgccatcc-aactgagtttgatttctacctgt-gcagccatgctggcattcagg 604
|||||||| ||||| |||||||||||| |||||||||| | ||||||||||||||| |||
Sbjct: 23 aagatctgtcatcccaactgagtttgacttctacctgtggtagccatgctggcattaagg 82
Query: 605 gaacaagccgccctgcccattaccatgttctgtgggatgagaacaacttt-acggctgat 663
| || || || || || ||||| ||||| ||||| |||| | ||||||| || ||| ||
Sbjct: 83 gtactagtcgtccagctcattatcatgtcttgtggnatgaaaccaactttcacagctaat 142
Query: 664 gggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacac-gctcagt 722
| ||||| | ||| ||||||||| | || ||||| ||||| |||||||| | |||| ||
Sbjct: 143 gcattgcagattcttaccaacaacctttgctacacctatgcaaggtgcactcggctctgt 202
Query: 723 atcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacat 782
||| |||||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| ||
Sbjct: 203 atcaattgttccacctgcttattatgctcatctggctgccttccgtgctcgtttctatat 262
Query: 783 ggagccagatac 794
||| ||||||||
Sbjct: 263 ggaaccagatac 274
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1493_H11
Length = 106693
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 64449 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 64390
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 64389 atggtttgcaaactctgacaaacaacttgtgctacacgta 64350
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 65558 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 65499
Query: 124 gt 125
||
Sbjct: 65498 gt 65497
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 64621 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 64562
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 64561 catgcgggcattcagg 64546
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 65372 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 65313
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 65312 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 65253
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 65252 gtaagtggtggaatgatcagg 65232
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 64841 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 64782
Query: 481 aatcacaa 488
|| |||||
Sbjct: 64781 aaccacaa 64774
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 65014 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 64955
Query: 387 tagaaagg 394
||||||||
Sbjct: 64954 tagaaagg 64947
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 65150 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 65091
Query: 328 agg 330
|||
Sbjct: 65090 agg 65088
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 63980 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 63921
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 63920 ctactgctaag 63910
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 64126 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 64067
Query: 790 gatac 794
|||||
Sbjct: 64066 gatac 64062
>gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005121, whole
genome shotgun sequence
Length = 43744
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 12822 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 12881
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 12882 atggtttgcaaactctgacaaacaacttgtgctacacgta 12921
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 11713 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 11772
Query: 124 gt 125
||
Sbjct: 11773 gt 11774
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 12650 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 12709
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 12710 catgcgggcattcagg 12725
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Plus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 11899 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 11958
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 11959 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 12018
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 12019 gtaagtggtggaatgatcagg 12039
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 12430 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 12489
Query: 481 aatcacaa 488
|| |||||
Sbjct: 12490 aaccacaa 12497
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 12257 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 12316
Query: 387 tagaaagg 394
||||||||
Sbjct: 12317 tagaaagg 12324
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 12121 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 12180
Query: 328 agg 330
|||
Sbjct: 12181 agg 12183
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 13291 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 13350
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 13351 ctactgctaag 13361
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 13145 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 13204
Query: 790 gatac 794
|||||
Sbjct: 13205 gatac 13209
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 2514515 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 2514456
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 2514455 atggtttgcaaactctgacaaacaacttgtgctacacgta 2514416
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2515624 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 2515565
Query: 124 gt 125
||
Sbjct: 2515564 gt 2515563
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 2514687 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 2514628
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 2514627 catgcgggcattcagg 2514612
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 2515438 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 2515379
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 2515378 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 2515319
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 2515318 gtaagtggtggaatgatcagg 2515298
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 2514907 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 2514848
Query: 481 aatcacaa 488
|| |||||
Sbjct: 2514847 aaccacaa 2514840
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 2515080 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 2515021
Query: 387 tagaaagg 394
||||||||
Sbjct: 2515020 tagaaagg 2515013
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 2515216 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 2515157
Query: 328 agg 330
|||
Sbjct: 2515156 agg 2515154
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 2514046 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 2513987
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 2513986 ctactgctaag 2513976
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 2514192 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 2514133
Query: 790 gatac 794
|||||
Sbjct: 2514132 gatac 2514128
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 13781086 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 13781027
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 13781026 atggtttgcaaactctgacaaacaacttgtgctacacgta 13780987
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 13782195 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 13782136
Query: 124 gt 125
||
Sbjct: 13782135 gt 13782134
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 13781258 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 13781199
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 13781198 catgcgggcattcagg 13781183
Score = 83.8 bits (42), Expect = 2e-013
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 22410132 aagatctgtcatccaactgagtttgacttctacctgtgtagccatgctggcatt 22410079
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 13782009 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 13781950
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 13781949 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 13781890
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 13781889 gtaagtggtggaatgatcagg 13781869
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 13781478 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 13781419
Query: 481 aatcacaa 488
|| |||||
Sbjct: 13781418 aaccacaa 13781411
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 13781651 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 13781592
Query: 387 tagaaagg 394
||||||||
Sbjct: 13781591 tagaaagg 13781584
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 13781787 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 13781728
Query: 328 agg 330
|||
Sbjct: 13781727 agg 13781725
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 13780617 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 13780558
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 13780557 ctactgctaag 13780547
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 58 attatctttggtgctgatgtgacccatccccatcctgg 95
||||| |||||||||||||| |||||||| ||||||||
Sbjct: 22411223 attatatttggtgctgatgttacccatcctcatcctgg 22411186
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagccca 188
||||| ||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 22411050 caagattggcctgaggtgacaaagtatgctgggttggtttctgctcaagccca 22410998
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 13780763 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 13780704
Query: 790 gatac 794
|||||
Sbjct: 13780703 gatac 13780699
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||||| ||||| || ||||| |||||||||||
Sbjct: 22410544 cagggatggcgttagtgaaggccaattttaccaagttct 22410506
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 27234150 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 27234091
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 27234090 atggtttgcaaactctgacaaacaacttgtgctacacgta 27234051
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 27235259 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 27235200
Query: 124 gt 125
||
Sbjct: 27235199 gt 27235198
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 27234322 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 27234263
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 27234262 catgcgggcattcagg 27234247
Score = 83.8 bits (42), Expect = 2e-013
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 35863196 aagatctgtcatccaactgagtttgacttctacctgtgtagccatgctggcatt 35863143
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 27235073 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 27235014
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 27235013 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 27234954
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 27234953 gtaagtggtggaatgatcagg 27234933
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 27234542 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 27234483
Query: 481 aatcacaa 488
|| |||||
Sbjct: 27234482 aaccacaa 27234475
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 27234715 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 27234656
Query: 387 tagaaagg 394
||||||||
Sbjct: 27234655 tagaaagg 27234648
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 27234851 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 27234792
Query: 328 agg 330
|||
Sbjct: 27234791 agg 27234789
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 27233681 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 27233622
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 27233621 ctactgctaag 27233611
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 58 attatctttggtgctgatgtgacccatccccatcctgg 95
||||| |||||||||||||| |||||||| ||||||||
Sbjct: 35864287 attatatttggtgctgatgttacccatcctcatcctgg 35864250
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgc 164
||||||| |||||||||||| |||||||| ||||||||
Sbjct: 3845528 gttgcttctcaagactggcccgaggttaccaagtatgc 3845491
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagccca 188
||||| ||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 35864114 caagattggcctgaggtgacaaagtatgctgggttggtttctgctcaagccca 35864062
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 27233827 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 27233768
Query: 790 gatac 794
|||||
Sbjct: 27233767 gatac 27233763
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||||| ||||| || ||||| |||||||||||
Sbjct: 35863608 cagggatggcgttagtgaaggccaattttaccaagttct 35863570
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
|||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||
Sbjct: 27349516 agggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctg 27349457
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
|||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 27349456 atggtttgcaaactctgacaaacaacttgtgctacacgta 27349417
Score = 91.7 bits (46), Expect = 8e-016
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 27350625 tttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagct 27350566
Query: 124 gt 125
||
Sbjct: 27350565 gt 27350564
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 27349688 ggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagc 27349629
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 27349628 catgcgggcattcagg 27349613
Score = 83.8 bits (42), Expect = 2e-013
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 35780726 aagatctgtcatccaactgagtttgacttctacctgtgtagccatgctggcatt 35780673
Score = 81.8 bits (41), Expect = 7e-013
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcc 186
||||||| |||||||||||||||||| || || ||||| ||||| |||||||| || |||
Sbjct: 27350439 gttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcc 27350380
Query: 187 catcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaagggggact 246
||||| |||||||||||||||| || |||||| ||||||| |||| || |||
Sbjct: 27350379 catcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaact 27350320
Query: 247 gtctctggtggcatgatcagg 267
|| |||||| |||||||||
Sbjct: 27350319 gtaagtggtggaatgatcagg 27350299
Score = 73.8 bits (37), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 421 cagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaat 480
||||| || ||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 27349908 cagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaat 27349849
Query: 481 aatcacaa 488
|| |||||
Sbjct: 27349848 aaccacaa 27349841
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| |||||||| ||||| || || || |||||||| ||||| |||||||||||
Sbjct: 27350081 cagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccat 27350022
Query: 387 tagaaagg 394
||||||||
Sbjct: 27350021 tagaaagg 27350014
Score = 69.9 bits (35), Expect = 3e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 27350217 gagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttac 27350158
Query: 328 agg 330
|||
Sbjct: 27350157 agg 27350155
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 27349047 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 27348988
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 27348987 ctactgctaag 27348977
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 58 attatctttggtgctgatgtgacccatccccatcctgg 95
||||| |||||||||||||| |||||||| ||||||||
Sbjct: 35781817 attatatttggtgctgatgttacccatcctcatcctgg 35781780
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 127 gttgcttttcaagactggcctgaggttacaaagtatgc 164
||||||| |||||||||||| |||||||| ||||||||
Sbjct: 3750240 gttgcttctcaagactggcccgaggttaccaagtatgc 3750203
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagccca 188
||||| ||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 35781644 caagattggcctgaggtgacaaagtatgctgggttggtttctgctcaagccca 35781592
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
|||||||||||||| ||||| || || || || || |||||||| || |||||||||||
Sbjct: 27349193 gttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccg 27349134
Query: 790 gatac 794
|||||
Sbjct: 27349133 gatac 27349129
Score = 46.1 bits (23), Expect = 0.041
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||||| ||||| || ||||| |||||||||||
Sbjct: 35781138 cagggatggcgttagtgaaggccaattttaccaagttct 35781100
>gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010310, whole
genome shotgun sequence
Length = 13371
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 5309 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 5250
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 5249 acgagttgcaaaccctcacgaacaacttgtgctacacgta 5210
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 6237 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 6178
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 6177 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 6118
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 6117 actgttactggtggcatgatca 6096
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 5678 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 5619
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 5618 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 5564
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 4992 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 4933
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 4932 acatctgacagtggatcaatggc 4910
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 5466 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 5407
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 5406 gctggcatacagg 5394
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 6409 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 6350
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 6349 agattccagtccttccattgcagctgt 6323
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 4829 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 4781
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 5844 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 5785
Query: 387 tagaaagg 394
||||||||
Sbjct: 5784 tagaaagg 5777
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 6018 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 5959
Query: 324 ctacagg 330
||||||
Sbjct: 5958 ttacagg 5952
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 2177278 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 2177219
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 2177218 acgagttgcaaaccctcacgaacaacttgtgctacacgta 2177179
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 2178206 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 2178147
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 2178146 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 2178087
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 2178086 actgttactggtggcatgatca 2178065
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 2177647 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 2177588
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 2177587 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 2177533
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 2176961 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 2176902
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 2176901 acatctgacagtggatcaatggc 2176879
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 2177435 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 2177376
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 2177375 gctggcatacagg 2177363
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 2178378 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 2178319
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 2178318 agattccagtccttccattgcagctgt 2178292
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 2176798 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 2176750
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 2177813 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 2177754
Query: 387 tagaaagg 394
||||||||
Sbjct: 2177753 tagaaagg 2177746
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 2177987 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 2177928
Query: 324 ctacagg 330
||||||
Sbjct: 2177927 ttacagg 2177921
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 6217892 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 6217833
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 6217832 acgagttgcaaaccctcacgaacaacttgtgctacacgta 6217793
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 6218820 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 6218761
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 6218760 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 6218701
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 6218700 actgttactggtggcatgatca 6218679
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 6218261 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 6218202
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 6218201 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 6218147
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 6217575 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 6217516
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 6217515 acatctgacagtggatcaatggc 6217493
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 6218049 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 6217990
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 6217989 gctggcatacagg 6217977
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 6218992 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 6218933
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 6218932 agattccagtccttccattgcagctgt 6218906
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 6217412 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 6217364
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 6218427 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 6218368
Query: 387 tagaaagg 394
||||||||
Sbjct: 6218367 tagaaagg 6218360
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 6218601 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 6218542
Query: 324 ctacagg 330
||||||
Sbjct: 6218541 ttacagg 6218535
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 25361991 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 25361932
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 25361931 acgagttgcaaaccctcacgaacaacttgtgctacacgta 25361892
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 25362919 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 25362860
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 25362859 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 25362800
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 25362799 actgttactggtggcatgatca 25362778
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 25362360 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 25362301
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 25362300 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 25362246
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 25361674 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 25361615
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 25361614 acatctgacagtggatcaatggc 25361592
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 25362148 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 25362089
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 25362088 gctggcatacagg 25362076
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 25363091 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 25363032
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 25363031 agattccagtccttccattgcagctgt 25363005
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 25361511 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 25361463
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 25362526 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 25362467
Query: 387 tagaaagg 394
||||||||
Sbjct: 25362466 tagaaagg 25362459
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 25362700 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 25362641
Query: 324 ctacagg 330
||||||
Sbjct: 25362640 ttacagg 25362634
Score = 44.1 bits (22), Expect = 0.16
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
||||| |||||||| | ||| ||||| || ||||| || |||||| ||||||||||||
Sbjct: 16196315 aagatatgccatcccagtgaatttgacttttacctttgtagccattctggcattcagg 16196372
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
complete sequence
Length = 175163
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 49302 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 49243
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 49242 acgagttgcaaaccctcacgaacaacttgtgctacacgta 49203
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 50230 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 50171
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 50170 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 50111
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 50110 actgttactggtggcatgatca 50089
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 49671 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 49612
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 49611 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 49557
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 48985 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 48926
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 48925 acatctgacagtggatcaatggc 48903
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 49459 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 49400
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 49399 gctggcatacagg 49387
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 50402 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 50343
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 50342 agattccagtccttccattgcagctgt 50316
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 48822 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 48774
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 49837 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 49778
Query: 387 tagaaagg 394
||||||||
Sbjct: 49777 tagaaagg 49770
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 50011 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 49952
Query: 324 ctacagg 330
||||||
Sbjct: 49951 ttacagg 49945
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct: 28400627 agggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcag 28400568
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
| | ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 28400567 acgagttgcaaaccctcacgaacaacttgtgctacacgta 28400528
Score = 107 bits (54), Expect = 1e-020
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 28401555 gtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaa 28401496
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||||| ||||||| ||||||||||| ||||||||||| || | || ||
Sbjct: 28401495 gcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagagga 28401436
Query: 244 actgtctctggtggcatgatca 265
||||| |||||||||||||||
Sbjct: 28401435 actgttactggtggcatgatca 28401414
Score = 103 bits (52), Expect = 2e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 416 actaccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttg 475
|||| |||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||
Sbjct: 28400996 actatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttg 28400937
Query: 476 ctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctgg 530
||||||||||||| || | ||| |||| |||| ||| || ||||| ||||||||
Sbjct: 28400936 ctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctgg 28400882
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 733 cctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagat 792
|||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 28400310 cctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagag 28400251
Query: 793 acgagtgacagtggatctatggc 815
|| |||||||||||| |||||
Sbjct: 28400250 acatctgacagtggatcaatggc 28400228
Score = 89.7 bits (45), Expect = 3e-015
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 28400784 actgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccat 28400725
Query: 592 gctggcattcagg 604
|||||||| ||||
Sbjct: 28400724 gctggcatacagg 28400712
Score = 85.7 bits (43), Expect = 5e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | ||||| || |||||||| ||||| || ||||| |||||||| ||
Sbjct: 28401727 tgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggaga 28401668
Query: 99 agattctagtccttccattgcagctgt 125
|||||| ||||||||||||||||||||
Sbjct: 28401667 agattccagtccttccattgcagctgt 28401641
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 887 tacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 28400147 tacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaaga 28400099
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| ||||| || || || |||||| |||||||||| |||||||||||
Sbjct: 28401162 cagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccat 28401103
Query: 387 tagaaagg 394
||||||||
Sbjct: 28401102 tagaaagg 28401095
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
||||||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||
Sbjct: 28401336 cagggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatatt 28401277
Query: 324 ctacagg 330
||||||
Sbjct: 28401276 ttacagg 28401270
>gb|AU225409.1|AU225409 AU225409 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0368, mRNA sequence
Length = 482
Score = 99.6 bits (50), Expect = 3e-018
Identities = 110/130 (84%)
Strand = Plus / Minus
Query: 665 ggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtat 724
||||||||||||| || ||||||||||| ||||| ||||| |||||||| || || ||||
Sbjct: 458 ggttgcaaactctgacaaacaacttgtgctacacctatgcaaggtgcacccgttccgtat 399
Query: 725 cgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatgg 784
| || |||||||||||||| ||||| || || || || || |||||||| || |||||||
Sbjct: 398 caatcgttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatgg 339
Query: 785 agccagatac 794
|||| |||||
Sbjct: 338 agccggatac 329
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 864 tgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgtt 923
||||||||||||||| ||||| | |||| || |||||||| || || || ||||||||
Sbjct: 247 tgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgtt 188
Query: 924 ctactgctaag 934
|||||||||||
Sbjct: 187 ctactgctaag 177
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,236,238
Number of Sequences: 438736
Number of extensions: 1236238
Number of successful extensions: 6337
Number of sequences better than 0.5: 138
Number of HSP's better than 0.5 without gapping: 155
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5238
Number of HSP's gapped (non-prelim): 1071
length of query: 1118
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1097
effective length of database: 2,791,206,460
effective search space: 3061953486620
effective search space used: 3061953486620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)