BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing... 256 1e-065
dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA... 256 1e-065
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 256 1e-065
dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA... 256 1e-065
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 256 1e-065
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 256 1e-065
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 256 1e-065
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 256 1e-065
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 256 1e-065
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 256 1e-065
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 256 1e-065
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 256 1e-065
gb|CA755226.1|CA755226 BR030016000_PLATE_A04_25_023.ab1 OA ... 254 5e-065
dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA... 254 5e-065
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 254 5e-065
dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA... 254 5e-065
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 254 5e-065
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 254 5e-065
dbj|AP005248.4| Oryza sativa (japonica cultivar-group) geno... 254 5e-065
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 254 5e-065
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 254 5e-065
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 254 5e-065
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 254 5e-065
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 254 5e-065
gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germinati... 250 8e-064
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 246 1e-062
gb|CB671069.1|CB671069 OSJNEe04H10.r OSJNEe Oryza sativa (j... 244 5e-062
gb|CB675032.1|CB675032 OSJNEe10H13.r OSJNEe Oryza sativa (j... 244 5e-062
gb|CB677499.1|CB677499 OSJNEe14I04.r OSJNEe Oryza sativa (j... 244 5e-062
gb|AU082289.1|AU082289 AU082289 Rice callus Oryza sativa (j... 212 2e-052
gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing t... 210 7e-052
gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germinati... 208 3e-051
gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressin... 208 3e-051
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 208 3e-051
dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 208 3e-051
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 208 3e-051
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 208 3e-051
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 208 3e-051
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 208 3e-051
gb|CB645002.1|CB645002 OSJNEb06H07.r OSJNEb Oryza sativa (j... 204 4e-050
gb|CB670294.1|CB670294 OSJNEe03E21.r OSJNEe Oryza sativa (j... 194 4e-047
gb|CB672250.1|CB672250 OSJNEe06D04.r OSJNEe Oryza sativa (j... 194 4e-047
gb|CB671504.1|CB671504 OSJNEe05B24.r OSJNEe Oryza sativa (j... 190 7e-046
gb|CB672866.1|CB672866 OSJNEe07C04.r OSJNEe Oryza sativa (j... 182 2e-043
gb|CB676378.1|CB676378 OSJNEe12J14.r OSJNEe Oryza sativa (j... 178 3e-042
gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing t... 176 1e-041
gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa... 161 6e-037
gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (j... 135 3e-029
gb|CB677473.1|CB677473 OSJNEe14G24.r OSJNEe Oryza sativa (j... 135 3e-029
gb|AU198182.1|AU198182 AU198182 Rice green shoot Oryza sati... 107 8e-021
gb|CB681902.1|CB681902 OSJNEf08K11.r OSJNEf Oryza sativa (j... 107 8e-021
gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing t... 100 2e-018
gb|CB638157.1|CB638157 OSJNEa06C08.r OSJNEa Oryza sativa (j... 94 1e-016
gb|D48612.2|D48612 RICS14935A Rice green shoot Oryza sativa... 90 2e-015
gb|AU089739.1|AU089739 AU089739 Rice green shoot Oryza sati... 58 6e-006
gb|AU174036.1|AU174036 AU174036 Rice green shoot Oryza sati... 58 6e-006
gb|AU182284.1|AU182284 AU182284 Rice panicle at flowering s... 58 6e-006
gb|CB637087.1|CB637087 OSJNEa03E07.r OSJNEa Oryza sativa (j... 58 6e-006
gb|CB637767.1|CB637767 OSJNEa04O24.r OSJNEa Oryza sativa (j... 58 6e-006
gb|CF311261.1|CF311261 ABF--06-G16.g1 ABF3-overexpressing t... 58 6e-006
gb|AU082173.1|AU082173 AU082173 Rice green shoot Oryza sati... 52 4e-004
gb|AU222726.1|AU222726 AU222726 Rice shoot Oryza sativa (ja... 52 4e-004
gb|CB636280.1|CB636280 OSJNEa01J02.r OSJNEa Oryza sativa (j... 52 4e-004
dbj|AK061688.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 52 4e-004
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 52 4e-004
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|D23115.1|D23115 RICC2228A Rice callus Oryza sativa (japo... 50 0.002
gb|AU082170.1|AU082170 AU082170 Rice green shoot Oryza sati... 50 0.002
gb|AU181357.1|AU181357 AU181357 Rice callus (2001) Oryza sa... 50 0.002
gb|CF277609.1|CF277609 14ETL--03-D13.b1 Rice etiolated leaf... 50 0.002
dbj|AK062007.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|D24381.1|D24381 RICR1814A Rice root Oryza sativa (japoni... 48 0.006
gb|AU096339.1|AU096339 AU096339 Rice green shoot Oryza sati... 46 0.024
gb|AU162472.1|AU162472 AU162472 Rice root Oryza sativa (jap... 46 0.024
gb|AC132494.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.024
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|AC135426.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) c... 46 0.024
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 46 0.024
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.024
gb|AU032363.1|AU032363 AU032363 Rice root Oryza sativa (jap... 44 0.096
>gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-N01, mRNA sequence
Length = 505
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 252 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 311
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 312 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 371
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 372 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 431
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 432 tgtggtttggattgcaactag 452
>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full
insert sequence
Length = 1180
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 397 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 456
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 457 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 516
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 517 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 576
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 577 tgtggtttggattgcaactag 597
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 823 atgccagtgtttgattgttcagcattctttatt 855
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
insert sequence
Length = 4029
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 3249 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 3308
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3309 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 3368
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 3369 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 3428
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 3429 tgtggtttggattgcaactag 3449
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 3676 atgccagtgtttgattgttcagcattctttatt 3708
>dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029A22, full
insert sequence
Length = 2325
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 1874 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 1933
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 1934 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 1993
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 1994 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 2053
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 2054 tgtggtttggattgcaactag 2074
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
sequence
Length = 171376
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 136878 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 136819
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 136818 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 136759
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 136758 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 136699
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 136698 tgtggtttggattgcaactag 136678
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 136451 atgccagtgtttgattgttcagcattctttatt 136419
>gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008229, whole
genome shotgun sequence
Length = 36790
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 8098 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 8157
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 8158 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 8217
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 8218 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 8277
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 8278 tgtggtttggattgcaactag 8298
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 8525 atgccagtgtttgattgttcagcattctttatt 8557
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3905
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 3079 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 3138
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3139 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 3198
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 3199 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 3258
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 3259 tgtggtttggattgcaactag 3279
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 3506 atgccagtgtttgattgttcagcattctttatt 3538
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 180305 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 180364
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 180365 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 180424
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 180425 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 180484
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 180485 tgtggtttggattgcaactag 180505
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 180732 atgccagtgtttgattgttcagcattctttatt 180764
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 8599222 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 8599281
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 8599282 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 8599341
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 8599342 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 8599401
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 8599402 tgtggtttggattgcaactag 8599422
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 7194347 cttctttgccttctgggtgattgtccacctgtaccccttcct 7194306
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 8599649 atgccagtgtttgattgttcagcattctttatt 8599681
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 35865385 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 35865444
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 35865445 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 35865504
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 35865505 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 35865564
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 35865565 tgtggtttggattgcaactag 35865585
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 34460510 cttctttgccttctgggtgattgtccacctgtaccccttcct 34460469
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 35865812 atgccagtgtttgattgttcagcattctttatt 35865844
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 34968674 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 34968733
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 34968734 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 34968793
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 34968794 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 34968853
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 34968854 tgtggtttggattgcaactag 34968874
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 33567583 cttctttgccttctgggtgattgtccacctgtaccccttcct 33567542
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 34969101 atgccagtgtttgattgttcagcattctttatt 34969133
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 256 bits (129), Expect = 1e-065
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 34878602 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 34878661
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 34878662 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 34878721
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||||||
Sbjct: 34878722 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggaggag 34878781
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 34878782 tgtggtttggattgcaactag 34878802
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 33477073 cttctttgccttctgggtgattgtccacctgtaccccttcct 33477032
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 407 atgcaagtgtttgattgtgcagcattctttatt 439
|||| ||||||||||||| ||||||||||||||
Sbjct: 34879029 atgccagtgtttgattgttcagcattctttatt 34879061
>gb|CA755226.1|CA755226 BR030016000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030016000_PLATE_A04_25_023.ab1 similar to (AF200530)
cellulose synthase-6 [Zea mays], mRNA sequence
Length = 817
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 8 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 67
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 68 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 127
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 128 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 187
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 188 gtgtggtttggattgcaactaggg 211
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 485 tgtacaaacttgtgtctcaataaggcaggcaggaatg 521
Score = 42.1 bits (21), Expect = 0.38
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 415 gtttgattgtgcagcattctttatt 439
|||||||||| ||||||||||||||
Sbjct: 399 gtttgattgtccagcattctttatt 423
>dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H11, full
insert sequence
Length = 1827
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 1036 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 1095
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 1096 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 1155
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 1156 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 1215
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 1216 gtgtggtttggattgcaactaggg 1239
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 1513 tgtacaaacttgtgtctcaataaggcaggcaggaatg 1549
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full
insert sequence
Length = 3221
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 2430 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 2489
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 2490 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 2549
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 2550 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 2609
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 2610 gtgtggtttggattgcaactaggg 2633
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 2907 tgtacaaacttgtgtctcaataaggcaggcaggaatg 2943
>dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full
insert sequence
Length = 1867
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 1141 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 1200
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 1201 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 1260
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 1261 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 1320
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 1321 gtgtggtttggattgcaactaggg 1344
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 1618 tgtacaaacttgtgtctcaataaggcaggcaggaatg 1654
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full
insert sequence
Length = 4127
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 3336 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 3395
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 3396 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 3455
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 3456 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 3515
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 3516 gtgtggtttggattgcaactaggg 3539
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 3813 tgtacaaacttgtgtctcaataaggcaggcaggaatg 3849
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409D09
Length = 150485
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 39755 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 39696
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 39695 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 39636
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 39635 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 39576
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 39575 gtgtggtttggattgcaactaggg 39552
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 39278 tgtacaaacttgtgtctcaataaggcaggcaggaatg 39242
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0084P08
Length = 158656
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 156382 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 156323
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 156322 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 156263
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 156262 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 156203
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 156202 gtgtggtttggattgcaactaggg 156179
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 155905 tgtacaaacttgtgtctcaataaggcaggcaggaatg 155869
>gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015914, whole
genome shotgun sequence
Length = 29977
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 12335 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 12276
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 12275 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 12216
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 12215 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 12156
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 12155 gtgtggtttggattgcaactaggg 12132
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 11858 tgtacaaacttgtgtctcaataaggcaggcaggaatg 11822
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 1469426 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 1469367
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 1469366 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 1469307
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 1469306 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 1469247
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 1469246 gtgtggtttggattgcaactaggg 1469223
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 1468949 tgtacaaacttgtgtctcaataaggcaggcaggaatg 1468913
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060 genomic
scaffold, whole genome shotgun sequence
Length = 1552265
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 1442154 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 1442095
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 1442094 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 1442035
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 1442034 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 1441975
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 1441974 gtgtggtttggattgcaactaggg 1441951
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 1441677 tgtacaaacttgtgtctcaataaggcaggcaggaatg 1441641
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 12875631 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 12875572
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 12875571 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 12875512
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 12875511 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 12875452
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 12875451 gtgtggtttggattgcaactaggg 12875428
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 8447191 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 8447250
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 8447251 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 8447310
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 8447311 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 8447370
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 8447371 atgtggtctggattgtaacta 8447391
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 12875154 tgtacaaacttgtgtctcaataaggcaggcaggaatg 12875118
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||| || |||||||||||||| |||| |||||||||||
Sbjct: 5796689 cttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5796645
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 254 bits (128), Expect = 5e-065
Identities = 185/204 (90%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 13688763 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 13688704
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 13688703 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 13688644
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 13688643 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 13688584
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 13688583 gtgtggtttggattgcaactaggg 13688560
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 8533194 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 8533253
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 8533254 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 8533313
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 8533314 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 8533373
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 8533374 atgtggtctggattgtaacta 8533394
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 13688286 tgtacaaacttgtgtctcaataaggcaggcaggaatg 13688250
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||| || |||||||||||||| |||| |||||||||||
Sbjct: 5885405 cttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5885361
>gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 250 bits (126), Expect = 8e-064
Identities = 182/201 (90%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggagg 66
||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||
Sbjct: 251 ttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggttggaagg 310
Query: 67 caaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctca 126
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 311 caaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatcttctcg 370
Query: 127 ctcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggag 186
||||| ||||| |||||||| |||||||| |||||| |||| || || ||||| ||| ||
Sbjct: 371 ctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctggagnag 430
Query: 187 tgtggtttggattgcaactag 207
|||||||||||||||||||||
Sbjct: 431 tgtggtttggattgcaactag 451
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full
insert sequence
Length = 4208
Score = 246 bits (124), Expect = 1e-062
Identities = 184/204 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || | |||||||||||||||||||| ||
Sbjct: 3418 cttctttgcattttgggtgatcgtccatctttaccaattcctcaaaggtttggttggaag 3477
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 3478 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 3537
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| || ||
Sbjct: 3538 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaaga 3597
Query: 186 gtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||
Sbjct: 3598 gtgtggtttggattgcaactaggg 3621
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 3895 tgtacaaacttgtgtctcaataaggcaggcaggaatg 3931
>gb|CB671069.1|CB671069 OSJNEe04H10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04H10 3', mRNA sequence
Length = 765
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Minus
Query: 11 ttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaa 70
|||||||||||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct: 765 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 706
Query: 71 acaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcc 130
||||||| || |||||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct: 705 acaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctcactcc 646
Query: 131 tttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtg 190
| ||||| |||||||| |||||| | |||||| |||||||||||||||| || |||||||
Sbjct: 645 tctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaagagtgtg 586
Query: 191 gtttggattgcaactaggg 209
|||||||||||||||||||
Sbjct: 585 gtttggattgcaactaggg 567
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 293 tgtacaaacttgtgtctcaataaggcaggcaggaatg 257
>gb|CB675032.1|CB675032 OSJNEe10H13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10H13 3', mRNA sequence
Length = 764
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Minus
Query: 11 ttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaa 70
|||||||||||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct: 764 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 705
Query: 71 acaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcc 130
||||||| || |||||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct: 704 acaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctcactcc 645
Query: 131 tttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtg 190
| ||||| |||||||| |||||| | |||||| |||||||||||||||| || |||||||
Sbjct: 644 tctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaagagtgtg 585
Query: 191 gtttggattgcaactaggg 209
|||||||||||||||||||
Sbjct: 584 gtttggattgcaactaggg 566
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 292 tgtacaaacttgtgtctcaataaggcaggcaggaatg 256
>gb|CB677499.1|CB677499 OSJNEe14I04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14I04 3', mRNA sequence
Length = 781
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Minus
Query: 11 ttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaa 70
|||||||||||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct: 781 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 722
Query: 71 acaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcc 130
||||||| || |||||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct: 721 acaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctcactcc 662
Query: 131 tttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtg 190
| ||||| |||||||| |||||| | |||||| |||||||||||||||| || |||||||
Sbjct: 661 tctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaagagtgtg 602
Query: 191 gtttggattgcaactaggg 209
|||||||||||||||||||
Sbjct: 601 gtttggattgcaactaggg 583
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 309 tgtacaaacttgtgtctcaataaggcaggcaggaatg 273
>gb|AU082289.1|AU082289 AU082289 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12805, mRNA sequence
Length = 711
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Plus
Query: 43 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 102
|||||||||||||||||||| |||||||||||||| || |||||||| || |||||||||
Sbjct: 4 ttcctcaaaggtttggttggaaggcaaaacaggacgccaacaattgttattgtctggtcc 63
Query: 103 atcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaag 162
|| || ||||||||||||||||||||||| ||||| |||||||| |||||| | ||||||
Sbjct: 64 attcttctggcttcaatcttctcactcctctgggtccggattgatcctttcttagcaaag 123
Query: 163 gatgatggtccacttcttgaggagtgtggtttggattgcaactaggg 209
|||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 124 aatgatggtccacttctggaagagtgtggtttggattgcaactaggg 170
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 443 tgtacaaacttgtgtctcaataaggcaggcaggaatg 479
>gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-G16, mRNA sequence
Length = 414
Score = 210 bits (106), Expect = 7e-052
Identities = 157/174 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 234 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 293
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 294 gcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttctc 353
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttct 179
|||||| ||||| |||||||| |||||| | |||||| ||||||||||||||||
Sbjct: 354 actcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttct 407
>gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 655
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 321 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 380
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 381 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 440
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 441 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 500
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 501 atgtggtctggattgtaacta 521
>gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-J12, mRNA sequence
Length = 531
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 198 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 257
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 258 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 317
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 318 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 377
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 378 atgtggtctggattgtaacta 398
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 82203 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 82262
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 82263 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 82322
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 82323 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 82382
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 82383 atgtggtctggattgtaacta 82403
>dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C05, full
insert sequence
Length = 1335
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 480 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 539
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 540 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 599
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 600 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 659
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 660 atgtggtctggattgtaacta 680
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 3143 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 3202
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 3203 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 3262
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 3263 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 3322
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 3323 atgtggtctggattgtaacta 3343
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0669H03
Length = 167878
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 65662 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 65721
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 65722 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 65781
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 65782 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 65841
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 65842 atgtggtctggattgtaacta 65862
>gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015596, whole
genome shotgun sequence
Length = 13414
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 4679 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 4620
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 4619 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 4560
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 4559 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 4500
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 4499 atgtggtctggattgtaacta 4479
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3746
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 3143 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 3202
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 3203 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 3262
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 3263 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 3322
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 3323 atgtggtctggattgtaacta 3343
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 8489266 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 8489325
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 8489326 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 8489385
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 8489386 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 8489445
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 8489446 atgtggtctggattgtaacta 8489466
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||| || |||||||||||||| |||| |||||||||||
Sbjct: 5841477 cttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5841433
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 208 bits (105), Expect = 3e-051
Identities = 177/201 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 2393566 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 2393625
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 2393626 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 2393685
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||| || ||||| ||||| || ||||||||||| ||| || |||| || ||||| |||||
Sbjct: 2393686 acttctatgggtccggatcgatcctttccttgcgaagaataatggccctcttctggagga 2393745
Query: 186 gtgtggtttggattgcaacta 206
|||||| ||||||| |||||
Sbjct: 2393746 atgtggtctggattgtaacta 2393766
>gb|CB645002.1|CB645002 OSJNEb06H07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06H07 3', mRNA sequence
Length = 805
Score = 204 bits (103), Expect = 4e-050
Identities = 148/163 (90%)
Strand = Plus / Minus
Query: 47 tcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcc 106
|||||||||||||||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 805 tcaaaggtttggttggaaggcaaaacaggacgccaacaattgttattgtctggtccattc 746
Query: 107 tgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatg 166
| ||||||||||||||||||||||| ||||| |||||||| |||||| | |||||| |||
Sbjct: 745 ttctggcttcaatcttctcactcctctgggtccggattgatcctttcttagcaaagaatg 686
Query: 167 atggtccacttcttgaggagtgtggtttggattgcaactaggg 209
||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 685 atggtccacttctggaagagtgtggtttggattgcaactaggg 643
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 369 tgtacaaacttgtgtctcaataaggcaggcaggaatg 333
>gb|CB670294.1|CB670294 OSJNEe03E21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03E21 3', mRNA sequence
Length = 750
Score = 194 bits (98), Expect = 4e-047
Identities = 146/162 (90%)
Strand = Plus / Minus
Query: 48 caaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcct 107
||||||||||||||| |||||||||||||| || |||||||| || ||||||||||| ||
Sbjct: 750 caaaggtttggttggaaggcaaaacaggacgccaacaattgttattgtctggtccattct 691
Query: 108 gctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatga 167
||||||||||||||||||||||| ||||| |||||||| |||||| | |||||| ||||
Sbjct: 690 tctggcttcaatcttctcactcctctgggtccggattgatcctttcttagcaaagaatga 631
Query: 168 tggtccacttcttgaggagtgtggtttggattgcaactaggg 209
|||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 630 tggttcacttctggaagagtgtggtttggattgcaactaggg 589
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 315 tgtacaaacttgtgtctcaataaggcaggcaggaatg 279
>gb|CB672250.1|CB672250 OSJNEe06D04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06D04 3', mRNA sequence
Length = 745
Score = 194 bits (98), Expect = 4e-047
Identities = 143/158 (90%)
Strand = Plus / Minus
Query: 52 ggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctg 111
||||||||||| |||||||||||||| || |||||||| || ||||||||||| || |||
Sbjct: 745 ggtttggttggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctg 686
Query: 112 gcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggt 171
|||||||||||||||||||| ||||| |||||||| |||||| | |||||| ||||||||
Sbjct: 685 gcttcaatcttctcactcctctgggtccggattgatcctttcttagcaaagaatgatggt 626
Query: 172 ccacttcttgaggagtgtggtttggattgcaactaggg 209
|||||||| || ||||||||||||||||||||||||||
Sbjct: 625 ccacttctggaagagtgtggtttggattgcaactaggg 588
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 314 tgtacaaacttgtgtctcaataaggcaggcaggaatg 278
>gb|CB671504.1|CB671504 OSJNEe05B24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05B24 3', mRNA sequence
Length = 793
Score = 190 bits (96), Expect = 7e-046
Identities = 141/156 (90%)
Strand = Plus / Minus
Query: 54 tttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggc 113
||||||||| |||||||||||||| || |||||||| || ||||||||||| || |||||
Sbjct: 793 tttggttggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggc 734
Query: 114 ttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtcc 173
|||||||||||||||||| ||||| |||||||| |||||| | |||||| ||||||||||
Sbjct: 733 ttcaatcttctcactcctctgggtccggattgatcctttcttagcaaagaatgatggtcc 674
Query: 174 acttcttgaggagtgtggtttggattgcaactaggg 209
|||||| || ||||||||||||||||||||||||||
Sbjct: 673 acttctggaagagtgtggtttggattgcaactaggg 638
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 364 tgtacaaacttgtgtctcaataaggcaggcaggaatg 328
>gb|CB672866.1|CB672866 OSJNEe07C04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07C04 3', mRNA sequence
Length = 796
Score = 182 bits (92), Expect = 2e-043
Identities = 137/152 (90%)
Strand = Plus / Minus
Query: 58 gttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttca 117
||||| |||||||||||||| || |||||||| || ||||||||||| || |||||||||
Sbjct: 796 gttggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttca 737
Query: 118 atcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccactt 177
|||||||||||||| ||||| |||||||| |||||| | |||||| ||||||||||||||
Sbjct: 736 atcttctcactcctctgggtccggattgatcctttcttagcaaagaatgatggtccactt 677
Query: 178 cttgaggagtgtggtttggattgcaactaggg 209
|| || ||||||||||||||||||||||||||
Sbjct: 676 ctggaagagtgtggtttggattgcaactaggg 645
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 371 tgtacaaacttgtgtctcaataaggcaggcaggaatg 335
>gb|CB676378.1|CB676378 OSJNEe12J14.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12J14 3', mRNA sequence
Length = 749
Score = 178 bits (90), Expect = 3e-042
Identities = 132/146 (90%)
Strand = Plus / Minus
Query: 64 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 123
|||||||||||||| || |||||||| || ||||||||||| || |||||||||||||||
Sbjct: 745 aggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatcttc 686
Query: 124 tcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgag 183
|||||||| ||||| |||||||| |||||| | |||||| |||||||||||||||| ||
Sbjct: 685 tcactcctctgggtccggattgatcctttcttagcaaagaatgatggtccacttctggaa 626
Query: 184 gagtgtggtttggattgcaactaggg 209
||||||||||||||||||||||||||
Sbjct: 625 gagtgtggtttggattgcaactaggg 600
Score = 58.0 bits (29), Expect = 6e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatg 536
|||||||||||| |||||||||||||||||||||||
Sbjct: 326 tgtacaaacttgtgtctcaataaggcaggcaggaatg 290
>gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-M03, mRNA sequence
Length = 635
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| | ||
Sbjct: 483 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtttgaag 542
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 543 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatcttctc 602
Query: 126 actcctttgggttcggattgaccctttccttgc 158
||| || ||||| ||||| || |||||||||||
Sbjct: 603 acttctatgggtccggatcgatcctttccttgc 635
>gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 467
Score = 161 bits (81), Expect = 6e-037
Identities = 178/204 (87%), Gaps = 5/204 (2%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct: 131 cttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaag 190
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||||||| || |||||||| || ||||||||||| || |||| ||||||||||||
Sbjct: 191 gcaaaacaggacgccaacaattgttattgtctggtccattcttctgg-ttcaatcttctc 249
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|||||| ||||| |||| ||| || ||| | |||||| ||||||| |||||||| || ||
Sbjct: 250 actcctctgggtccgga-tgatcc-ttcttagcaaagaatgatgg-ccacttctggaaga 306
Query: 186 gtgtggtttggattgcaactaggg 209
|||| | ||||||| |||||||||
Sbjct: 307 gtgtnggttggatt-caactaggg 329
>gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30355_4A, mRNA sequence
Length = 270
Score = 135 bits (68), Expect = 3e-029
Identities = 98/108 (90%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 163 cttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggttggaag 222
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggc 113
||||||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 223 gcaaaacaggacaccaacgattgttatcgtctggtccattctactggc 270
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 926,796
Number of Sequences: 438736
Number of extensions: 926796
Number of successful extensions: 5525
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5144
Number of HSP's gapped (non-prelim): 380
length of query: 671
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 650
effective length of database: 2,791,206,460
effective search space: 1814284199000
effective search space used: 1814284199000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)