BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.4
(634 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01010423.1| Oryza sativa (japonica cultivar-group) c... 648 0.0
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 648 0.0
ref|NT_107105.1| Oryza sativa genomic DNA, chromosome 4, BA... 648 0.0
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 648 0.0
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 648 0.0
emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromoso... 648 0.0
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 648 0.0
gb|CF277900.1|CF277900 14ETL--03-J18.b1 Rice etiolated leaf... 644 0.0
gb|CF293873.1|CF293873 30DGS--03-D08.b1 Rice leaf plasmid c... 644 0.0
gb|CB666264.1|CB666264 OSJNEd13B15.f OSJNEd Oryza sativa (j... 642 0.0
dbj|AK121709.1| Oryza sativa (japonica cultivar-group) cDNA... 642 0.0
gb|AACV01005232.1| Oryza sativa (japonica cultivar-group) c... 642 0.0
ref|XM_462686.1| Oryza sativa (japonica cultivar-group), p... 642 0.0
ref|XM_467310.1| Oryza sativa (japonica cultivar-group), mRNA 642 0.0
ref|XM_473741.1| Oryza sativa (japonica cultivar-group), p... 642 0.0
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 642 0.0
dbj|AP004778.3| Oryza sativa (japonica cultivar-group) geno... 642 0.0
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 642 0.0
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 642 0.0
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 642 0.0
gb|CB666265.1|CB666265 OSJNEd13B15.r OSJNEd Oryza sativa (j... 634 e-179
gb|AU062881.2|AU062881 AU062881 Rice callus Oryza sativa (j... 571 e-160
gb|CF276032.1|CF276032 14ETL--01-A11.b1 Rice etiolated leaf... 545 e-152
gb|CV726113.1|CV726113 14Salt--03-J09.b1 Salt treated rice ... 523 e-146
gb|CV726074.1|CV726074 14Salt--03-I09.b1 Salt treated rice ... 509 e-142
gb|CF277901.1|CF277901 14ETL--03-J18.g1 Rice etiolated leaf... 494 e-137
gb|CF276033.1|CF276033 14ETL--01-A11.g1 Rice etiolated leaf... 444 e-122
gb|D15738.1|D15738 RICC1170A Rice callus Oryza sativa (japo... 406 e-111
gb|AU083384.1|AU083384 AU083384 Rice callus Oryza sativa (j... 345 2e-092
gb|CF293874.1|CF293874 30DGS--03-D08.g1 Rice leaf plasmid c... 315 2e-083
gb|CV727142.1|CV727142 14Salt--05-C09.g1 Salt treated rice ... 309 1e-081
gb|CV726075.1|CV726075 14Salt--03-I09.g1 Salt treated rice ... 305 2e-080
gb|CV726114.1|CV726114 14Salt--03-J09.g1 Salt treated rice ... 305 2e-080
gb|C73337.1|C73337 C73337 Rice panicle at flowering stage O... 281 2e-073
gb|AU093846.1|AU093846 AU093846 Rice panicle at flowering s... 266 1e-068
gb|C73971.1|C73971 C73971 Rice panicle shorter than 3cm Ory... 258 3e-066
gb|D22680.1|D22680 RICC0892A Rice callus Oryza sativa (japo... 242 2e-061
gb|C98657.1|C98657 C98657 Rice panicle at flowering stage O... 220 7e-055
gb|AQ331053.1|AQ331053 nbxb0048L05r CUGI Rice BAC Library O... 210 7e-052
gb|D15345.2|D15345 RICC0491A Rice callus Oryza sativa (japo... 176 9e-042
gb|AQ796940.1|AQ796940 nbxb0071D13f CUGI Rice BAC Library O... 141 5e-031
gb|AQ365974.2|AQ365974 nbxb0064J04f CUGI Rice BAC Library O... 100 2e-018
gb|D39887.1|D39887 RICS1534A Rice shoot Oryza sativa (japon... 94 1e-016
gb|D22679.1|D22679 RICC0892B Rice callus Oryza sativa (japo... 48 0.006
gb|AQ364344.1|AQ364344 nbxb0060J06r CUGI Rice BAC Library O... 42 0.36
gb|AU058336.1|AU058336 AU058336 Oryza sativa Nipponbare imm... 42 0.36
>gb|AACV01010423.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010423, whole
genome shotgun sequence
Length = 68448
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 66857 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 66798
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 66797 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 66738
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 66737 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 66678
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 66677 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 66618
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 66617 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 66558
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66557 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 66498
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 66497 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 66438
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 66437 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 66391
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 111459 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 111400
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 111399 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 111340
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 111339 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 111280
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 111279 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 111220
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 111219 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 111160
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111159 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 111100
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 111099 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 111040
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 111039 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 110993
>ref|NT_107105.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093F12,
complete sequence
Length = 186339
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 111459 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 111400
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 111399 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 111340
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 111339 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 111280
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 111279 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 111220
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 111219 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 111160
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111159 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 111100
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 111099 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 111040
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 111039 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 110993
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 7935993 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 7935934
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 7935933 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 7935874
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 7935873 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 7935814
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 7935813 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 7935754
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7935753 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 7935694
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7935693 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 7935634
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 7935633 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 7935574
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 7935573 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 7935527
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 27080092 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 27080033
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 27080032 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 27079973
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 27079972 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 27079913
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 27079912 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 27079853
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27079852 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 27079793
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27079792 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 27079733
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 27079732 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 27079673
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 27079672 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 27079626
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
complete sequence
Length = 186142
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 111239 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 111180
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 111179 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 111120
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 111119 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 111060
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 111059 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 111000
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 110999 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 110940
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110939 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 110880
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 110879 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 110820
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 110819 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 110773
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 648 bits (327), Expect = 0.0
Identities = 432/467 (92%)
Strand = Plus / Minus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 30214948 ttgtataccttttaagccgaagggatctcgacctcgccatcggagatctcctgctgcaga 30214889
Query: 228 tccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc 287
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 30214888 tccttggggtccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcc 30214829
Query: 288 ttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcg 347
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 30214828 ttgacggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcg 30214769
Query: 348 atgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtcc 407
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 30214768 atgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcc 30214709
Query: 408 ctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacc 467
| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 30214708 cgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggacacc 30214649
Query: 468 ttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttg 527
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30214648 ttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttg 30214589
Query: 528 gcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatc 587
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 30214588 gccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatc 30214529
Query: 588 ttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 30214528 ttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 30214482
>gb|CF277900.1|CF277900 14ETL--03-J18.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-J18, mRNA sequence
Length = 706
Score = 644 bits (325), Expect = 0.0
Identities = 424/457 (92%)
Strand = Plus / Minus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 627 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 568
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcc 297
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 567 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtcc 508
Query: 298 cggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgt 357
|||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 507 cggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcgt 448
Query: 358 cgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggtt 417
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 447 cgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggct 388
Query: 418 ccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgcc 477
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 387 ccttgagggccttgatgacgagcgccgcggcggaggggacgacggacaccttcgcctgac 328
Query: 478 ggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcct 537
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 ggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcct 268
Query: 538 tggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggcca 597
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct: 267 tggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatcttgggggcaa 208
Query: 598 gcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
| |||||||||||||| ||||||||||| ||||||||
Sbjct: 207 gggacgacgccgcgcccacctcgcctccggtcacgcg 171
>gb|CF293873.1|CF293873 30DGS--03-D08.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-D08, mRNA sequence
Length = 675
Score = 644 bits (325), Expect = 0.0
Identities = 424/457 (92%)
Strand = Plus / Minus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 621 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 562
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcc 297
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtcc 502
Query: 298 cggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgt 357
|||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 501 cggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcgt 442
Query: 358 cgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggtt 417
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 441 cgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggct 382
Query: 418 ccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgcc 477
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 381 ccttgagggccttgatgacgagcgccgcggcggaggggacgacggacaccttcgcctgac 322
Query: 478 ggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcct 537
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcct 262
Query: 538 tggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggcca 597
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct: 261 tggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatcttgggggcaa 202
Query: 598 gcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
| |||||||||||||| ||||||||||| ||||||||
Sbjct: 201 gggacgacgccgcgcccacctcgcctccggtcacgcg 165
>gb|CB666264.1|CB666264 OSJNEd13B15.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13B15 5', mRNA sequence
Length = 761
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 536 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 477
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 476 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 417
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 416 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 357
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 356 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 297
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 237
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 177
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 176 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 117
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 116 cgacgacgccgcgccgacctcaccgccggtcacgcg 81
>dbj|AK121709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076B01, full
insert sequence
Length = 831
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 586 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 527
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 526 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 467
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 466 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 407
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 406 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 347
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 287
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 227
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 226 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 167
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 166 cgacgacgccgcgccgacctcaccgccggtcacgcg 131
>gb|AACV01005232.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005232, whole
genome shotgun sequence
Length = 45807
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 34728 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 34669
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 34668 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 34609
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 34608 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 34549
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 34548 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 34489
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34488 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 34429
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 34428 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 34369
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 34368 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 34309
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 34308 cgacgacgccgcgccgacctcaccgccggtcacgcg 34273
>ref|XM_462686.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 501
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 501 ttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggtc 442
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtccc 382
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 381 ggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcgtc 322
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 321 gaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggctc 262
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 261 cttgagggccttgatgacgagcgccgcggcggaggggacgacggacaccttcgcctgacg 202
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 142
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 141 ggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatcttgggggcaag 82
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||| ||||||||||| ||||||||
Sbjct: 81 ggacgacgccgcgcccacctcgcctccggtcacgcg 46
>ref|XM_467310.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 831
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 586 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 527
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 526 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 467
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 466 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 407
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 406 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 347
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 287
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 227
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 226 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 167
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 166 cgacgacgccgcgccgacctcaccgccggtcacgcg 131
>ref|XM_473741.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 501
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 501 ttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggtc 442
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtccc 382
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 381 ggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcgtc 322
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 321 gaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggctc 262
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 261 cttgagggccttgatgacgagcgccgcggcggaggggacgacggacaccttcgcctgacg 202
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 142
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 141 ggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatcttgggggcaag 82
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||| ||||||||||| ||||||||
Sbjct: 81 ggacgacgccgcgcccacctcgcctccggtcacgcg 46
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 3957011 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 3956952
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 3956951 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 3956892
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 3956891 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 3956832
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 3956831 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 3956772
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3956771 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 3956712
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3956711 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 3956652
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 3956651 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 3956592
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 3956591 cgacgacgccgcgccgacctcaccgccggtcacgcg 3956556
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0459B01
Length = 163087
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 108585 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 108526
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 108525 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 108466
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 108465 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 108406
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 108405 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 108346
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108345 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 108286
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 108285 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 108226
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 108225 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 108166
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 108165 cgacgacgccgcgccgacctcaccgccggtcacgcg 108130
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 15302099 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 15302040
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 15302039 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 15301980
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 15301979 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 15301920
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 15301919 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 15301860
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15301859 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 15301800
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15301799 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 15301740
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 15301739 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 15301680
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 15301679 cgacgacgccgcgccgacctcaccgccggtcacgcg 15301644
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 28755163 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 28755104
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 28755103 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 28755044
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 28755043 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 28754984
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 28754983 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 28754924
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28754923 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 28754864
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28754863 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 28754804
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 28754803 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 28754744
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 28754743 cgacgacgccgcgccgacctcaccgccggtcacgcg 28754708
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 642 bits (324), Expect = 0.0
Identities = 423/456 (92%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 28792012 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 28791953
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 28791952 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 28791893
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 28791892 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 28791833
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 28791832 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 28791773
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28791772 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 28791713
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28791712 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 28791653
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 28791652 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 28791593
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 28791592 cgacgacgccgcgccgacctcaccgccggtcacgcg 28791557
>gb|CB666265.1|CB666265 OSJNEd13B15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13B15 3', mRNA sequence
Length = 733
Score = 634 bits (320), Expect = e-179
Identities = 422/456 (92%)
Strand = Plus / Plus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 230 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 289
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 290 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 349
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 350 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 409
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 410 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 469
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 470 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggaaaccttggcctgccg 529
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gttctggacggtgagcttcacggtgacgcggaggcccttccagtccttggcggtctcctt 589
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 590 ggcgatgtcctctccgatcttcttcggggagagaccgagcggcccgatcttgggggcgag 649
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||||||| || || ||||||||
Sbjct: 650 cgacgacgccgcgccgacctcaccgccggtcacgcg 685
>gb|AU062881.2|AU062881 AU062881 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51240_7A, mRNA sequence
Length = 420
Score = 571 bits (288), Expect = e-160
Identities = 377/404 (93%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 231 ttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttg 290
||||||||||| || |||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 420 ttggggtccttgccgtcgacggtgcacccaacg-tgacgcaggtcccaaggatctccttg 362
Query: 291 acggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatg 350
||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct: 361 acggtcccggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatg 302
Query: 351 acgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctc 410
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 301 acgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgc 242
Query: 411 tcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttg 470
||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 241 tcgggctccttgagggccttgatgacgagcgccgcggcggaggggacgacggaca-cttc 183
Query: 471 gcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcg 530
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcctgacggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggcc 123
Query: 531 gtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttg 590
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 122 gtctccttggcgatgtcctcaccgatcttcttgggggagagaccgagagggccgatcttg 63
Query: 591 ggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 62 ggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 19
>gb|CF276032.1|CF276032 14ETL--01-A11.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-A11, mRNA sequence
Length = 440
Score = 545 bits (275), Expect = e-152
Identities = 357/383 (93%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 253 tgcacccgacgctgacgcaggtccccaggatctcc-ttgacggtcccggccaactccttg 311
|||| ||||||||||||||||| || ||||||||| |||||||| ||||||| |||||||
Sbjct: 440 tgcagccgacgctgacgcaggtgccgaggatctcccttgacggtgccggccatctccttg 381
Query: 312 gccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttg 371
|||||||||||| || |||| | | |||||||||||||||||||||||||||||||||
Sbjct: 380 gccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtcgaggctgatgttg 321
Query: 372 ccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgccttg 431
|||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||
Sbjct: 320 ccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctccttgagcgccttg 261
Query: 432 atgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 atgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgggcggtg 201
Query: 492 agcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcg 551
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agcttcacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctct 141
Query: 552 ccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 611
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 140 ccgatcttcttcggggagagaccgagcggcccgatcttgggggcgagcgacgacgccgcg 81
Query: 612 ccgacctcgcctcccgtcacgcg 634
|||||||| || || ||||||||
Sbjct: 80 ccgacctcaccgccggtcacgcg 58
>gb|CV726113.1|CV726113 14Salt--03-J09.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-J09, mRNA sequence
Length = 532
Score = 523 bits (264), Expect = e-146
Identities = 333/356 (93%)
Strand = Plus / Minus
Query: 279 aggatctccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttg 338
||||||||||||||||||| ||||| |||||||||||||||||||||| |||| || ||
Sbjct: 528 aggatctccttgacggtcctggccatctccttggccatggacctgttcatcatgatcctg 469
Query: 339 gcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttc 398
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 468 gcgatctcgatgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttgaccttc 409
Query: 399 ttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacg 458
|||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 408 ttcctgtcccgctcgggctccttgagggccttgatgacgagcgccgcggcggaggggacg 349
Query: 459 acggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttc 518
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 348 acggacaccttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttc 289
Query: 519 cagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagc 578
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 288 cagtccttggccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgaga 229
Query: 579 gggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 228 gggccgatcttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 173
>gb|CV726074.1|CV726074 14Salt--03-I09.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-I09, mRNA sequence
Length = 516
Score = 509 bits (257), Expect = e-142
Identities = 335/361 (92%)
Strand = Plus / Minus
Query: 274 tccccaggatctccttgacggtcccggccaactccttggccatggacctgttccgcatgg 333
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct: 516 tcccaaggatctccttgacggtcctggccatctccttggccatggacctgttcatcatga 457
Query: 334 tcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttga 393
|| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 456 tcctggcgatctcgatgacgtcgtcgaggctgatgttaccactgtgcttgatgttcttga 397
Query: 394 ccttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggagg 453
||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 396 ccttcttcctgtcccgctcgggctccttgagggccttgatgacgagcgccgcggcggagg 337
Query: 454 ggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggc 513
|||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 336 ggacgacggacaccttcgcctgacggttctggacggtgagcttgacggtgacgcggaggc 277
Query: 514 ccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagac 573
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 276 ccttccagtccttggccgtctccttggcgatgtcctcaccgatcttcttgggggagagac 217
Query: 574 cgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgc 633
|||| ||||||||||||||||| || |||||||||||||| || | |||||| |||||||
Sbjct: 216 cgagagggccgatcttgggggcaagggacgacgccgcgcccacatagcctccggtcacgc 157
Query: 634 g 634
|
Sbjct: 156 g 156
>gb|CF277901.1|CF277901 14ETL--03-J18.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-J18, mRNA sequence
Length = 577
Score = 494 bits (249), Expect = e-137
Identities = 334/361 (92%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 217 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 276
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcc-ttgacggtc 296
|||| || |||||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct: 277 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccnttgacggtc 336
Query: 297 ccggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcg 356
||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 337 ccggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcg 396
Query: 357 tcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggt 416
|||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 tcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggc 456
Query: 417 tccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgc 476
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 457 tccttgagggccttgatgacgagcgccgcggcggaggggacgacggacaccttcgcctga 516
Query: 477 cggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcc 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 517 cggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcc 576
Query: 537 t 537
|
Sbjct: 577 t 577
>gb|CF276033.1|CF276033 14ETL--01-A11.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-A11, mRNA sequence
Length = 602
Score = 444 bits (224), Expect = e-122
Identities = 318/348 (91%), Gaps = 1/348 (0%)
Strand = Plus / Plus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 255 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 314
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 315 cttgccgtccacggtgcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 374
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | ||||||||||||||||||||
Sbjct: 375 ggccatctccttggccatggacctgggcctcatgaccctcgcgatctcgatgacgtcgtc 434
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||
Sbjct: 435 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgcggtccctctcgggctc 494
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttgagcgccttgatgacaagcgccgcggcggaggggacgacggagaccttggcctgccg 554
Query: 479 gttct-gcacggtgagcttgacggtgacgcggaggcccttccagtcct 525
||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 555 gttctggggcggtgagcttcacggtgacgcggaggcccttccagtcct 602
>gb|D15738.1|D15738 RICC1170A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1170A, mRNA sequence
Length = 442
Score = 406 bits (205), Expect = e-111
Identities = 273/296 (92%)
Strand = Plus / Minus
Query: 339 gcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttc 398
||||||||||| ||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 414 gcgatctcgattacggcgtcgagactgatgttacaactgtgcttgatgttcttgaccttc 355
Query: 399 ttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacg 458
|||||||||| |||||| ||||| || |||||||||||||||||| ||||||||||||||
Sbjct: 354 ttcctgtcccgctcgggctccttnagggccttgatgacgagcgccacggcggaggggacg 295
Query: 459 acggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttc 518
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 294 acggacaccttcgcctgacggttctggacggtgagcttgacggtgacgcggaggcccttc 235
Query: 519 cagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagc 578
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 234 cagtccttggccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccgaga 175
Query: 579 gggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 174 gggccgatcttgggggcaagggacgacgccgcgcccacctcgcctccggtcacgcg 119
>gb|AU083384.1|AU083384 AU083384 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51240, mRNA sequence
Length = 661
Score = 345 bits (174), Expect = 2e-092
Identities = 304/337 (90%), Gaps = 8/337 (2%)
Strand = Plus / Minus
Query: 190 ggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtccttcccatcga 249
||||||||||||| ||||| |||||||||||||| ||||||||||||| || ||||
Sbjct: 427 ggatctcgacctcgccatcggagatctcctgctgcagatccttggggtcctgccg-tcga 369
Query: 250 cggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaactcct 309
|||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct: 368 cggtgcacccaacgctgacgcag-tcccaaggatctccttgacggtcccggccatctcct 310
Query: 310 tggccatggacctgttccg-catggtcttggcgatctcgatgacgtcgtcgaggctgatg 368
||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 309 tggncatggacctgttccctcatgatcctggcgatctcgatgacgtcgtcgaggctgatg 250
Query: 369 ttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgcc 428
|| || |||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct: 249 ttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggctccttgagggcc 190
Query: 429 ttgatgacgagcgccgcggcgg-aggggacgac-ggagaccttggcctgccgg-ttct-g 484
|||||||||||||||||||||| |||||||||| ||| ||||| ||||| || |||| |
Sbjct: 189 ttgatgacgagcgccgcggcggaaggggacgacgggacaccttcgcctgaaggtttctgg 130
Query: 485 cacggtgagcttgacggtgacgc-ggaggcccttcca 520
|||||||||||||||||||||| |||||||||||||
Sbjct: 129 gacggtgagcttgacggtgacgcgggaggcccttcca 93
>gb|CF293874.1|CF293874 30DGS--03-D08.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-D08, mRNA sequence
Length = 448
Score = 315 bits (159), Expect = 2e-083
Identities = 226/247 (91%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 202 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 261
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctcctt-gacggtc 296
|||| || |||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 262 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctcctttgacggtc 321
Query: 297 ccggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcg 356
||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 322 ccggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcg 381
Query: 357 tcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggt 416
|||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 382 tcgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcgggc 441
Query: 417 tccttga 423
|||||||
Sbjct: 442 tccttga 448
>gb|CV727142.1|CV727142 14Salt--05-C09.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-C09, mRNA sequence
Length = 486
Score = 309 bits (156), Expect = 1e-081
Identities = 210/228 (92%)
Strand = Plus / Plus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 259 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 318
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcc 297
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 319 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtcc 378
Query: 298 cggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgt 357
|||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 379 cggccatctccttggccatggacctgttcctcatgatcctggcgatctcgatgacgtcgt 438
Query: 358 cgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgt 405
||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 439 cgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgt 486
>gb|CV726075.1|CV726075 14Salt--03-I09.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-I09, mRNA sequence
Length = 465
Score = 305 bits (154), Expect = 2e-080
Identities = 217/238 (91%)
Strand = Plus / Plus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 224 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 283
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcc 297
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 284 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtcc 343
Query: 298 cggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgt 357
||||| |||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 344 tggccatctccttggccatggacctgttcatcatgatcctggcgatctcgatgacgtcgt 403
Query: 358 cgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcggg 415
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 cgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcggg 461
>gb|CV726114.1|CV726114 14Salt--03-J09.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-J09, mRNA sequence
Length = 464
Score = 305 bits (154), Expect = 2e-080
Identities = 217/238 (91%)
Strand = Plus / Plus
Query: 178 tttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggt 237
||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 224 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 283
Query: 238 ccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcc 297
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 284 ccttgccgtcgacggtgcacccaacgctgacgcaggtcccaaggatctccttgacggtcc 343
Query: 298 cggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgt 357
||||| |||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 344 tggccatctccttggccatggacctgttcatcatgatcctggcgatctcgatgacgtcgt 403
Query: 358 cgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcggg 415
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 cgaggctgatgttaccactgtgcttgatgttcttgaccttcttcctgtcccgctcggg 461
>gb|C73337.1|C73337 C73337 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3812_1A, mRNA sequence
Length = 369
Score = 281 bits (142), Expect = 2e-073
Identities = 203/225 (90%)
Strand = Plus / Minus
Query: 401 cctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgac 460
|||||||| |||||| ||| |||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 354 cctgtcccgctcgggctccntgagggccttgattacgagcgccgcggcggaggggacnac 295
Query: 461 ggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttcca 520
||| ||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 294 ggaaaccttcgcctgacggttctggacggtgagcttgacggtgaagcggaggcccttcca 235
Query: 521 gtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgg 580
||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| | ||
Sbjct: 234 gtccttggccgtctccttggcgatgtcctcaccgatcttcttgggggagagaccnanagg 175
Query: 581 gccgatcttgggggccagcgacgacgccgcgccgacctcgcctcc 625
||||| ||||||||| || ||||||||||| || |||||||||||
Sbjct: 174 gccgancttgggggcaagggacgacgccgcacccacctcgcctcc 130
>gb|AU093846.1|AU093846 AU093846 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0916, mRNA sequence
Length = 547
Score = 266 bits (134), Expect = 1e-068
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 246 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 187
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||| ||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 186 cttgccgtccacggngcagccgacgctgacgcaggtgccgaggatctccttgacggtgcc 127
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | | ||| ||||||||||||||
Sbjct: 126 ggccatctccttggccatggacctgggcctcatgaccctcgngatntcgatgacgtcgtc 67
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct: 66 gaggctgatgttgccgctgtgcttgatgttcttcaccttcttgnggtccctctcgggctc 7
Query: 419 cttgag 424
||||||
Sbjct: 6 cttgag 1
>gb|C73971.1|C73971 C73971 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30051_1A, mRNA sequence
Length = 299
Score = 258 bits (130), Expect = 3e-066
Identities = 172/187 (91%)
Strand = Plus / Minus
Query: 448 cggaggggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgc 507
|||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||
Sbjct: 299 cggaggggacgacggacaccttcncctgacggttctggacggtgagcttgacggtgacgc 240
Query: 508 ggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcgggg 567
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 239 ggaggcccttccagtccttggccgtctccttggcgatgtcctcaccgatcttcttggggg 180
Query: 568 agagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccg 627
|||||||||| ||||||||||||||||| || |||||| ||||||| ||||| ||||| |
Sbjct: 179 agagaccgagagggccgatcttgggggcaagggacgacnccgcgcccacctcncctccgg 120
Query: 628 tcacgcg 634
|||||||
Sbjct: 119 tcacgcg 113
>gb|D22680.1|D22680 RICC0892A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0892_1A, mRNA sequence
Length = 297
Score = 242 bits (122), Expect = 2e-061
Identities = 165/180 (91%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 456 acgacggagaccttggcctgcc-ggttctgcacggtgagcttgacggtgacgcggaggcc 514
|||||| |||||||| ||| || ||||||| ||||||||||| ||||||||||| || ||
Sbjct: 296 acgacgnagaccttgncctncccggttctgnacggtgagcttcacggtgacgcgnagacc 237
Query: 515 cttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagacc 574
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 236 cttccagtccttggcggtctccttggcgatgtcctctccgatcttcttnggggagagacc 177
Query: 575 gagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct: 176 gagcggcccgatcttgggggcgagcgacgacgccgcgccgacctcaccgccggtcacgcg 117
>gb|C98657.1|C98657 C98657 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0916_2A, mRNA sequence
Length = 456
Score = 220 bits (111), Expect = 7e-055
Identities = 194/222 (87%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct: 258 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 199
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || || |||||||| |||| | ||| |||||| || ||||||||||||||||| ||
Sbjct: 198 cttgccgtccacggtgcagccgaag-tgaagcaggtgccgaggatctccttgacggtgcc 140
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| ||||||||||||||||||| || |||| | | | ||||||||||||||||||
Sbjct: 139 ggccatctccttggccatggacctgggcctcatganccttgngatctcgatgacgtcgtc 80
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttctt 400
|||| |||||||||||||||||||||||||||| ||| ||||
Sbjct: 79 gaggntgatgttgccgctgtgcttgatgttcttnaccntctt 38
>gb|AQ331053.1|AQ331053 nbxb0048L05r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0048L05r, DNA sequence
Length = 680
Score = 210 bits (106), Expect = 7e-052
Identities = 133/142 (93%)
Strand = Plus / Minus
Query: 493 gcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgc 552
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 393 gcttgacggtgacgcggaggcccttccagtccatggccgtctccttggcgatgtcctcac 334
Query: 553 cgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgc 612
|||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 333 cgatcttcttgggggagagaccgagagggccgatcttgggggcaagggacgacgccgcgc 274
Query: 613 cgacctcgcctcccgtcacgcg 634
| ||||||||||| ||||||||
Sbjct: 273 ccacctcgcctccggtcacgcg 252
>gb|D15345.2|D15345 RICC0491A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0491A, mRNA sequence
Length = 267
Score = 176 bits (89), Expect = 9e-042
Identities = 132/147 (89%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 489 gtgagcttgacggtgacgcggaggccctt-ccagtccttggcggtctccttggcgatgtc 547
|||||||| ||||| || || |||||||| |||||||||||| |||||||||||||||||
Sbjct: 267 gtgagcttnacggtnacncgnaggcccttnccagtccttggccgtctccttggcgatgtc 208
Query: 548 ctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgc 607
||| ||||||||||| || |||||||||| ||||||||||||||||| || ||||||||
Sbjct: 207 ctcaccgatcttcttgnggnagagaccgagagggccgatcttgggggcaagggacgacgc 148
Query: 608 cgcgccgacctcgcctcccgtcacgcg 634
|||||| ||||||||||| ||||||||
Sbjct: 147 cgcgcccacctcgcctccggtcacgcg 121
>gb|AQ796940.1|AQ796940 nbxb0071D13f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0071D13f, DNA sequence
Length = 709
Score = 141 bits (71), Expect = 5e-031
Identities = 143/166 (86%), Gaps = 1/166 (0%)
Strand = Plus / Plus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaag 227
||||||| | ||||||| || ||||||| |||||| ||||| |||||||||||||||
Sbjct: 512 ttgtataccttttaagccgaagggatcttgacctcgccatcggagatctcctgctgcaaa 571
Query: 228 tccttggggtccttcccatcgacggtgcacccga-cgctgacgcaggtccccaggatctc 286
|||||||||| ||| || |||||||||||||| | |||| |||||||||||| ||||||
Sbjct: 572 tccttggggtncttgccgtcgacggtgcaccccaacgcttgcgcaggtccccaagatctc 631
Query: 287 cttgacggtcccggccaactccttggccatggacctgttccgcatg 332
|||||| ||||||| || |||||||| |||||||||||||| ||||
Sbjct: 632 cttgaccgtcccgggcatctccttgggcatggacctgttcctcatg 677
>gb|AQ365974.2|AQ365974 nbxb0064J04f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0064J04f, DNA sequence
Length = 324
Score = 99.6 bits (50), Expect = 2e-018
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 565 gggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctc 624
||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 323 gggagagaccgagagggccgatcttgggggcaagggacgacgccgcgcccacctcgcctc 264
Query: 625 ccgtcacgcg 634
| ||||||||
Sbjct: 263 cggtcacgcg 254
>gb|D39887.1|D39887 RICS1534A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 242
Score = 93.7 bits (47), Expect = 1e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 543 atgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgac 602
|||||||| || |||||||||||| | ||||| ||||| |||||||||||| | | ||||
Sbjct: 242 atgtcctctccnatcttcttcgggaaaagaccnagcggcccgatcttggggccgancgac 183
Query: 603 gacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| || || ||||||||
Sbjct: 182 gacgccgcgccgacctcaccgccggtcacgcg 151
>gb|D22679.1|D22679 RICC0892B Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0892_12Z, mRNA sequence
Length = 269
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctc 202
||||||||||||||||||||||||
Sbjct: 50 ttaagctgaggggatctcgacctc 27
>gb|AQ364344.1|AQ364344 nbxb0060J06r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0060J06r, DNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 247 cgacggtgcacccgacgctgacgcaggtccccaggat 283
||||||||||||| ||| |||| |||||||| |||||
Sbjct: 591 cgacggtgcacccaacgttgactcaggtcccaaggat 627
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 168 ttgtatagcctttaagctgaggggatctcgacctcaccatc 208
||||||| | ||||||| || |||||||||||||| |||||
Sbjct: 512 ttgtataccttttaagccgaagggatctcgacctcgccatc 552
>gb|AU058336.1|AU058336 AU058336 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50518_1A, mRNA
sequence
Length = 271
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgac 199
|||||||||||||||||||||
Sbjct: 21 ttaagctgaggggatctcgac 1
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 955,896
Number of Sequences: 438736
Number of extensions: 955896
Number of successful extensions: 7776
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7595
Number of HSP's gapped (non-prelim): 155
length of query: 634
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 613
effective length of database: 2,791,206,460
effective search space: 1711009559980
effective search space used: 1711009559980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)