BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_190276.1| Oryza sativa (japonica cultivar-group), p... 714 0.0
gb|C98907.1|C98907 C98907 Rice panicle at flowering stage O... 256 2e-065
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 216 2e-053
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 216 2e-053
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
gb|C98908.1|C98908 C98908 Rice panicle at flowering stage O... 115 5e-023
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 54 2e-004
dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.16
>ref|NM_190276.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1566
Score = 714 bits (360), Expect = 0.0
Identities = 705/820 (85%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 1523 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 1464
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1463 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 1404
Query: 405 gaccacgcaaagtacccgcggacatcagctccgtccttgatcgcttgcgcaactgaattg 464
||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| |
Sbjct: 1403 gaccatgcgaagtacccacgaacatcagcaccatccttgattgcttgtgcaactgacgcg 1344
Query: 465 aggtaccctttgaagtaaccgaccctcgtcgtgtcgtttaggacctggtcaagcgttgcg 524
||||| |||||||||||||| ||||||||||| || || | ||| ||||||||||||||
Sbjct: 1343 aggtatcctttgaagtaaccaaccctcgtcgtatcattcaagacttggtcaagcgttgcc 1284
Query: 525 gattgatcgtcctcttcatccatgccattctcagtaacataaattgctggattattgtac 584
|||||||| || || |||||||||||||||||||| ||||| || | ||||| ||
Sbjct: 1283 gattgatcatcttcctcatccatgccattctcagttacatatatcacaggatttccatat 1224
Query: 585 ttcttcgctatataattaagtgacttatgaaggccccaaggaactatgaaaagccattca 644
|||| ||| |||||||||| | || | |||||||||||||||||||||||||| |||
Sbjct: 1223 ctctttgctgcataattaagtaatttccggaggccccaaggaactatgaaaagccactca 1164
Query: 645 gatgcagccctttcaccaattttttcaccactattccatttttctattcgctccatttgt 704
||||| |||||||||||||||||||||||| | |||||||||||||||| ||||| ||||
Sbjct: 1163 gatgcggccctttcaccaattttttcaccagtgttccatttttctattctctccacttgt 1104
Query: 705 tgcacttggtagaaataaacatcatttggattttggagatgagcaatgagtcttgaagta 764
|| ||| |||| ||||||| ||| | ||||| || |||||||||||| ||||||||||
Sbjct: 1103 tgtactcggtaaaaataaatatcttctggatcctgatgatgagcaatgaatcttgaagta 1044
Query: 765 taatgatttactccaacaaaatcaattttgttcctcatgaactctttatctttctctgaa 824
|||||||||| ||||||||| |||||||||||||| || || |||||||||||||| ||
Sbjct: 1043 taatgatttattccaacaaagtcaattttgttcctgataaattctttatctttctccgag 984
Query: 825 aaggttggaagatcactgcccagtcgctgacgcatgctttctgggtaatcaccaaaatat 884
||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 983 aaggttggaagatcatcgcccagtcgctgacgcatactttctgggtaatcaccgaaatat 924
Query: 885 attggatctaggtaccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtct 944
||||| || ||||||||||| || |||||||||||||| || | |||||||| || |||
Sbjct: 923 attgggtccaggtaccatcctagctgaaagtcaagccttcgttctgcagcaacctgatct 864
Query: 945 tccacattttcagaaaatggctctgtacattcgcaatcaacaaccaaccctacttcacca 1004
|| || || ||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 863 tctgttttctctgaaaatggctctgcccattcacaatcgacaaccaagcctacttcacca 804
Query: 1005 ccttgtgcagccttgaattttcttctataaacatcaacagcagcagcatgagccaagatt 1064
||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 803 ccttgcacagccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatt 744
Query: 1065 tggtgatgggcagccaagtaacatctagcagtttcacctt 1104
|||| ||||| |||||||| |||||||||||||| ||||
Sbjct: 743 tggtagtgggcggccaagtagcatctagcagtttcccctt 704
>gb|C98907.1|C98907 C98907 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3241_1A, mRNA sequence
Length = 395
Score = 256 bits (129), Expect = 2e-065
Identities = 243/281 (86%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 296 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 237
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 236 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 177
Query: 405 gaccacgcaaagtacccgcggacatcagctccgtccttgatcgcttgcgcaactgaattg 464
||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| |
Sbjct: 176 gaccatgcgaagtacccacgaacatcagcaccatccttgattgcttgtgcaactgacgcg 117
Query: 465 aggtaccctttgaagtaaccgaccctcgtcgtgtcgtttaggacctggtcaagcgttgcg 524
||||| |||||||||||||| ||||||||||| || || | ||| ||||||||||||||
Sbjct: 116 aggtatcctttgaagtaaccaaccctcgtcgtatcattcaagacttggtcaagcgttgcc 57
Query: 525 gattgatcgtcctcttcatccatgccattctcagtaacata 565
|||||||| || || |||||||||||||||||||| |||||
Sbjct: 56 gattgatcatcttcctcatccatgccattctcagttacata 16
>gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002847, whole
genome shotgun sequence
Length = 99512
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Plus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 75442 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 75501
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 75502 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 75561
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 75562 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 75621
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 75622 ggtaatcaccgaaatatattgggtccaggtacc 75654
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Plus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 73832 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 73891
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 73892 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 73951
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 73952 gaccatgcgaagtacccacgaacatcagc 73980
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 76338 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 76397
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 76398 cggccaagtagcatctagcagtttcccctt 76427
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Plus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 74071 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 74130
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 74131 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 74181
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 76018 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 76077
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 76078 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 76130
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 74783 aggccccaaggaactatgaaaagccactcagatgc 74817
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 74908 ccctttcaccaattttttcaccagtgttccatttttct 74945
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 39082053 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 39081994
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 39081993 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 39081934
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 39081933 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 39081874
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 39081873 ggtaatcaccgaaatatattgggtccaggtacc 39081841
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 39083663 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 39083604
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 39083603 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 39083544
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 39083543 gaccatgcgaagtacccacgaacatcagc 39083515
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 39081157 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 39081098
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 39081097 cggccaagtagcatctagcagtttcccctt 39081068
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 39083424 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 39083365
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 39083364 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 39083314
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 39081477 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 39081418
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 39081417 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 39081365
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 39082712 aggccccaaggaactatgaaaagccactcagatgc 39082678
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 39082587 ccctttcaccaattttttcaccagtgttccatttttct 39082550
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 13529436 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 13529377
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 13529376 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 13529317
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 13529316 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 13529257
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 13529256 ggtaatcaccgaaatatattgggtccaggtacc 13529224
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 13531046 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 13530987
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13530986 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 13530927
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 13530926 gaccatgcgaagtacccacgaacatcagc 13530898
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13528540 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 13528481
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 13528480 cggccaagtagcatctagcagtttcccctt 13528451
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 13530807 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 13530748
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 13530747 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 13530697
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 13528860 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 13528801
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 13528800 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 13528748
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 13530095 aggccccaaggaactatgaaaagccactcagatgc 13530061
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 13529970 ccctttcaccaattttttcaccagtgttccatttttct 13529933
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506A10
Length = 145265
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 19363 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 19304
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 19303 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 19244
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 19243 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 19184
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 19183 ggtaatcaccgaaatatattgggtccaggtacc 19151
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 20973 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 20914
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 20913 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 20854
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 20853 gaccatgcgaagtacccacgaacatcagc 20825
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18467 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 18408
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 18407 cggccaagtagcatctagcagtttcccctt 18378
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 20734 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 20675
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 20674 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 20624
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 18787 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 18728
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 18727 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 18675
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 20022 aggccccaaggaactatgaaaagccactcagatgc 19988
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 19897 ccctttcaccaattttttcaccagtgttccatttttct 19860
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 75016 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 74957
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 74956 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 74897
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 74896 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 74837
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 74836 ggtaatcaccgaaatatattgggtccaggtacc 74804
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 76626 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 76567
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 76566 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 76507
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 76506 gaccatgcgaagtacccacgaacatcagc 76478
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 74120 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 74061
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 74060 cggccaagtagcatctagcagtttcccctt 74031
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 76387 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 76328
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 76327 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 76277
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 74440 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 74381
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 74380 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 74328
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 75675 aggccccaaggaactatgaaaagccactcagatgc 75641
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 75550 ccctttcaccaattttttcaccagtgttccatttttct 75513
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 13247952 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 13247893
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 13247892 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 13247833
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 13247832 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 13247773
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 13247772 ggtaatcaccgaaatatattgggtccaggtacc 13247740
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 13249562 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 13249503
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13249502 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 13249443
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 13249442 gaccatgcgaagtacccacgaacatcagc 13249414
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13247056 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 13246997
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 13246996 cggccaagtagcatctagcagtttcccctt 13246967
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 13249323 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 13249264
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 13249263 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 13249213
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 13247376 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 13247317
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 13247316 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 13247264
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 13248611 aggccccaaggaactatgaaaagccactcagatgc 13248577
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 13248486 ccctttcaccaattttttcaccagtgttccatttttct 13248449
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 38449673 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 38449614
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 38449613 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 38449554
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 38449553 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 38449494
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 38449493 ggtaatcaccgaaatatattgggtccaggtacc 38449461
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 38451283 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 38451224
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 38451223 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 38451164
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 38451163 gaccatgcgaagtacccacgaacatcagc 38451135
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 38448777 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 38448718
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 38448717 cggccaagtagcatctagcagtttcccctt 38448688
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 38451044 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 38450985
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 38450984 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 38450934
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 38449097 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 38449038
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 38449037 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 38448985
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 38450332 aggccccaaggaactatgaaaagccactcagatgc 38450298
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 38450207 ccctttcaccaattttttcaccagtgttccatttttct 38450170
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 216 bits (109), Expect = 2e-053
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgag 747
|||||| ||||| |||||| ||| |||| ||||||| ||| | ||||| || ||||||
Sbjct: 39001383 ctattctctccacttgttgtactcggtaaaaataaatatcttctggatcctgatgatgag 39001324
Query: 748 caatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaact 807
|||||| |||||||||||||||||||| ||||||||| |||||||||||||| || || |
Sbjct: 39001323 caatgaatcttgaagtataatgatttattccaacaaagtcaattttgttcctgataaatt 39001264
Query: 808 ctttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctg 867
||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 39001263 ctttatctttctccgagaaggttggaagatcatcgcccagtcgctgacgcatactttctg 39001204
Query: 868 ggtaatcaccaaaatatattggatctaggtacc 900
|||||||||| ||||||||||| || |||||||
Sbjct: 39001203 ggtaatcaccgaaatatattgggtccaggtacc 39001171
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 39002993 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 39002934
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 39002933 acataaacaatgccaaacctcttggtgtatcccatagcccactcgaagttgtccaggaac 39002874
Query: 405 gaccacgcaaagtacccgcggacatcagc 433
||||| || |||||||| || ||||||||
Sbjct: 39002873 gaccatgcgaagtacccacgaacatcagc 39002845
Score = 115 bits (58), Expect = 5e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 39000487 ccttaaatttccttctgtaaacatcaacagcagcagcatgagccaagatttggtagtggg 39000428
Query: 1075 cagccaagtaacatctagcagtttcacctt 1104
| |||||||| |||||||||||||| ||||
Sbjct: 39000427 cggccaagtagcatctagcagtttcccctt 39000398
Score = 93.7 bits (47), Expect = 2e-016
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||
Sbjct: 39002754 cttgattgcttgtgcaactgacgcgaggtatcctttgaagtaaccaaccctcgtcgtatc 39002695
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|| | ||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 39002694 attcaagacttggtcaagcgttgccgattgatcatcttcctcatccatgcc 39002644
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 897 taccatccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttca 956
|||||||| || |||||||||||||| || | |||||||| || ||||| || ||
Sbjct: 39000807 taccatcctagctgaaagtcaagccttcgttctgcagcaacctgatcttctgttttctct 39000748
Query: 957 gaaaatggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttg 1009
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 39000747 gaaaatggctctgcccattcacaatcgacaaccaagcctacttcaccaccttg 39000695
Score = 61.9 bits (31), Expect = 7e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 615 aggccccaaggaactatgaaaagccattcagatgc 649
|||||||||||||||||||||||||| ||||||||
Sbjct: 39002042 aggccccaaggaactatgaaaagccactcagatgc 39002008
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 652 ccctttcaccaattttttcaccactattccatttttct 689
||||||||||||||||||||||| | ||||||||||||
Sbjct: 39001917 ccctttcaccaattttttcaccagtgttccatttttct 39001880
>gb|C98908.1|C98908 C98908 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3241_2Z, mRNA sequence
Length = 462
Score = 115 bits (58), Expect = 5e-023
Identities = 126/148 (85%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||||||||||||| | ||||||||||| || |||| ||| ||||| || ||||| ||
Sbjct: 180 aagcgcgagaaccaccgggccgatgctttgggatgccgggaaagcccatttttgtaatca 121
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| ||||| ||||| |||| ||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 120 acataaacaatgccaaacc-cttggngtatcccatagcccactcgaagttgtccaggaac 62
Query: 405 gaccacgcaaagtacccgcggacatcag 432
||||| || ||||| || || |||||||
Sbjct: 61 gaccaagcgaagtanccacgaacatcag 34
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagtaccc 421
||||||||||||||||||||| ||||| || ||||||||
Sbjct: 270 ccactcgaagttgtccaggaaagaccaggcgaagtaccc 308
>dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16546T, 3'
flanking sequence of Tos17 insertion in rice strain
NE7008, genomic survey sequence
Length = 272
Score = 44.1 bits (22), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| ||||| || |||||
Sbjct: 145 ccactcgaagttgtccagganagaccaggcnaagta 180
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,871,317
Number of Sequences: 438736
Number of extensions: 1871317
Number of successful extensions: 12881
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12700
Number of HSP's gapped (non-prelim): 180
length of query: 1118
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1097
effective length of database: 2,791,206,460
effective search space: 3061953486620
effective search space used: 3061953486620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)