BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU100901.1|AU100901 AU100901 Rice callus Oryza sativa (j... 454 e-125
gb|CV720895.1|CV720895 YBH--02-D10.b1 Rice before heading y... 454 e-125
ref|XM_483237.1| Oryza sativa (japonica cultivar-group), mRNA 448 e-123
gb|CF308788.1|CF308788 ABF--02-L20.g1 ABF3-overexpressing t... 446 e-123
gb|CF310453.1|CF310453 ABF--05-B21.b1 ABF3-overexpressing t... 446 e-123
gb|CF310454.1|CF310454 ABF--05-B21.g1 ABF3-overexpressing t... 438 e-120
gb|CF308787.1|CF308787 ABF--02-L20.b1 ABF3-overexpressing t... 430 e-118
gb|C27919.1|C27919 C27919 Rice callus cDNA Oryza sativa (ja... 381 e-103
gb|CV720823.1|CV720823 YBH--01-P12.b1 Rice before heading y... 357 4e-096
dbj|AP003883.3| Oryza sativa (japonica cultivar-group) geno... 337 4e-090
dbj|AP005245.3| Oryza sativa (japonica cultivar-group) geno... 337 4e-090
gb|AACV01018816.1| Oryza sativa (japonica cultivar-group) c... 337 4e-090
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 337 4e-090
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 337 4e-090
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 337 4e-090
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 337 4e-090
gb|CB685146.1|CB685146 OSJNEf15F06.f OSJNEf Oryza sativa (j... 319 1e-084
gb|CF292118.1|CF292118 14ROOT--02-N03.g1 Rice root plasmid ... 319 1e-084
gb|D22712.1|D22712 RICC0999A Rice callus Oryza sativa (japo... 307 4e-081
gb|AU032304.1|AU032304 AU032304 Rice root Oryza sativa (jap... 307 4e-081
gb|CF318690.1|CF318690 HD--08-O16.b1 OsHDAC1-overexpressing... 303 6e-080
dbj|AK120884.1| Oryza sativa (japonica cultivar-group) cDNA... 303 6e-080
gb|AU162542.1|AU162542 AU162542 Rice root Oryza sativa (jap... 293 6e-077
gb|D15690.1|D15690 RICC1101A Rice callus Oryza sativa (japo... 278 3e-072
gb|D15859.1|D15859 RICC1423A Rice callus Oryza sativa (japo... 264 5e-068
gb|AU092557.1|AU092557 AU092557 Rice callus Oryza sativa (j... 230 7e-058
ref|XM_467485.1| Oryza sativa (japonica cultivar-group), mRNA 230 7e-058
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 226 1e-056
dbj|AP003543.3| Oryza sativa (japonica cultivar-group) geno... 226 1e-056
gb|AACV01013746.1| Oryza sativa (japonica cultivar-group) c... 226 1e-056
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 226 1e-056
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 226 1e-056
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 226 1e-056
gb|C28014.1|C28014 C28014 Rice callus cDNA Oryza sativa (ja... 186 9e-045
gb|C74710.1|C74710 C74710 Rice cDNA from immature leaf incl... 180 6e-043
gb|AU070178.1|AU070178 AU070178 Rice root Oryza sativa (jap... 174 4e-041
gb|C27563.1|C27563 C27563 Rice callus cDNA Oryza sativa (ja... 163 1e-037
dbj|AK105284.1| Oryza sativa (japonica cultivar-group) cDNA... 163 1e-037
gb|AACV01005297.1| Oryza sativa (japonica cultivar-group) c... 163 1e-037
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 163 1e-037
dbj|AP004098.3| Oryza sativa (japonica cultivar-group) geno... 163 1e-037
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 163 1e-037
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 163 1e-037
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 163 1e-037
gb|CF318691.1|CF318691 HD--08-O16.g1 OsHDAC1-overexpressing... 119 2e-024
gb|D23531.1|D23531 RICC2963A Rice callus Oryza sativa (japo... 84 1e-013
gb|AU163352.1|AU163352 AU163352 Rice callus Oryza sativa (j... 82 4e-013
gb|AU095317.1|AU095317 AU095317 Rice cDNA from immature lea... 76 2e-011
gb|AU164653.1|AU164653 AU164653 Rice root Oryza sativa (jap... 76 2e-011
gb|C28774.1|C28774 C28774 Rice callus cDNA Oryza sativa (ja... 72 4e-010
gb|D22815.1|D22815 RICC1423B Rice callus Oryza sativa (japo... 60 1e-006
>gb|AU100901.1|AU100901 AU100901 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53439, mRNA sequence
Length = 517
Score = 454 bits (229), Expect = e-125
Identities = 328/361 (90%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 54 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 113
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 114 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 173
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 174 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 233
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 234 gcacatctggagcagtgggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 293
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 294 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 353
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 354 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 413
Query: 430 t 430
|
Sbjct: 414 t 414
>gb|CV720895.1|CV720895 YBH--02-D10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--02-D10, mRNA sequence
Length = 453
Score = 454 bits (229), Expect = e-125
Identities = 328/361 (90%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 69 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 128
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 129 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 188
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 189 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 248
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 249 gcacatctggagcagtgggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 308
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 309 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 368
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 369 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 428
Query: 430 t 430
|
Sbjct: 429 t 429
>ref|XM_483237.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 369
Score = 448 bits (226), Expect = e-123
Identities = 325/358 (90%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 12 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 71
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 72 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 131
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 132 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 191
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 192 gcacatctggagcagtgggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 251
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 252 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 311
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaa 427
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct: 312 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaa 369
>gb|CF308788.1|CF308788 ABF--02-L20.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-L20, mRNA sequence
Length = 536
Score = 446 bits (225), Expect = e-123
Identities = 327/361 (90%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 463 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 404
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 403 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 344
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 343 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 284
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 gcacatctggagcagttggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 224
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 223 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 164
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 163 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 104
Query: 430 t 430
|
Sbjct: 103 t 103
>gb|CF310453.1|CF310453 ABF--05-B21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-B21, mRNA sequence
Length = 536
Score = 446 bits (225), Expect = e-123
Identities = 327/361 (90%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 74 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 133
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 134 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 193
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 194 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 253
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 gcacatctggagcagttggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 313
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 314 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 373
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 374 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 433
Query: 430 t 430
|
Sbjct: 434 t 434
>gb|CF310454.1|CF310454 ABF--05-B21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-B21, mRNA sequence
Length = 500
Score = 438 bits (221), Expect = e-120
Identities = 326/361 (90%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 463 gaagggaggagcggcgaggaaggagaaggtggtgacgagggagtacaccatcaacctcca 404
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 403 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 344
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 343 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 284
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 gcacatctggagcagttggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 224
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 223 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 164
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 163 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 104
Query: 430 t 430
|
Sbjct: 103 t 103
>gb|CF308787.1|CF308787 ABF--02-L20.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-L20, mRNA sequence
Length = 534
Score = 430 bits (217), Expect = e-118
Identities = 326/361 (90%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 74 gaagggaggagcggcgaggaag-aggaggtggtgacgagggagtacaccatcaacctcca 132
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 133 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 192
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 193 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 252
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 gcacatctggagcagttggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccg 312
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgga 369
||||||||| || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct: 313 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccga 372
Query: 370 gatccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagc 429
| ||||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 373 ggtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagc 432
Query: 430 t 430
|
Sbjct: 433 t 433
>gb|C27919.1|C27919 C27919 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53439_1A, mRNA sequence
Length = 367
Score = 381 bits (192), Expect = e-103
Identities = 266/291 (91%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 53 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 112
Query: 130 caagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcag 189
||||||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 113 caagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcag 172
Query: 190 gaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaa 249
||||||||| |||||||| |||||||| || || |||||| |||||||||||||||||||
Sbjct: 173 gaagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaa 232
Query: 250 gcacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccg 309
||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 233 gcacatctggagcagtgggatcaggagtttnccgcggagggttcgtgtgaggttcgcccg 292
Query: 310 caagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcac 360
||||||||| || ||||||||||||||||| || |||||||| || |||||
Sbjct: 293 caagaggaatgacgaggaggatgccaaggaagagctctactctctggtcac 343
>gb|CV720823.1|CV720823 YBH--01-P12.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-P12, mRNA sequence
Length = 455
Score = 357 bits (180), Expect = 4e-096
Identities = 270/300 (90%)
Strand = Plus / Plus
Query: 131 aagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcagg 190
|||||||||||| |||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 18 aagcgcctccacagctgtacattcaagaagaaggcgcccaatgccatcaaagagatcagg 77
Query: 191 aagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaag 250
|||||||| |||||||| |||||||| || || |||||| ||||||||||||||||||||
Sbjct: 78 aagtttgcgcagaaggctatgggcactacagatgtcagggtcgatgtgaagctcaacaag 137
Query: 251 cacatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgc 310
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138 cacatctggagcagtgggatcaggagtgtgccgcggagggttcgtgtgaggatcgcccgc 197
Query: 311 aagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcggag 370
|||||||| || ||||||||||||||||| || |||||||| || ||||| || || |||
Sbjct: 198 aagaggaatgacgaggaggatgccaaggaagagctctactctctggtcactgtggccgag 257
Query: 371 atccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
||||| | ||||| ||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 258 gtccctcctgagggtttgaaggggctgggaaccaaggttgttgacgaaacggattaagct 317
>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1134_H03
Length = 135914
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 87956 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 87897
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 87896 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 87837
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 87836 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 87777
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 87776 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 87717
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 87716 aaggggctgggaaccaaggttgttgacgaaacggattaagct 87675
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 88901 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 88842
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 88841 caagcgcctccacagctg 88824
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 93620 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 93571
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 97814 gaagggaggagcggtgaggaaggaggaggtggt 97782
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0025J22
Length = 175355
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 42357 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 42298
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 42297 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 42238
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 42237 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 42178
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 42177 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 42118
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 42117 aaggggctgggaaccaaggttgttgacgaaacggattaagct 42076
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 43302 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 43243
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 43242 caagcgcctccacagctg 43225
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 48021 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 47972
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 52215 gaagggaggagcggtgaggaaggaggaggtggt 52183
>gb|AACV01018816.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018816, whole
genome shotgun sequence
Length = 28810
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Plus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 21623 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 21682
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 21683 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 21742
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 21743 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 21802
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 21803 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 21862
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 21863 aaggggctgggaaccaaggttgttgacgaaacggattaagct 21904
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 20678 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 20737
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 20738 caagcgcctccacagctg 20755
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15958 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 16007
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 11764 gaagggaggagcggtgaggaaggaggaggtggt 11796
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 24748154 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 24748095
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 24748094 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 24748035
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 24748034 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 24747975
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 24747974 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 24747915
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 24747914 aaggggctgggaaccaaggttgttgacgaaacggattaagct 24747873
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 24749099 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 24749040
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 24749039 caagcgcctccacagctg 24749022
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24753818 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 24753769
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 24758012 gaagggaggagcggtgaggaaggaggaggtggt 24757980
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 16241101 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 16241042
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 16241041 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 16240982
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 16240981 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 16240922
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 16240921 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 16240862
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 16240861 aaggggctgggaaccaaggttgttgacgaaacggattaagct 16240820
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 16242046 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 16241987
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 16241986 caagcgcctccacagctg 16241969
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246766 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 16246717
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 16250960 gaagggaggagcggtgaggaaggaggaggtggt 16250928
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 23843107 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 23843048
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 23843047 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 23842988
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 23842987 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 23842928
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 23842927 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 23842868
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 23842867 aaggggctgggaaccaaggttgttgacgaaacggattaagct 23842826
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 23844052 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 23843993
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 23843992 caagcgcctccacagctg 23843975
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23848772 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 23848723
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 23852966 gaagggaggagcggtgaggaaggaggaggtggt 23852934
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 337 bits (170), Expect = 4e-090
Identities = 254/282 (90%)
Strand = Plus / Minus
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 24986241 acattcaagaagaaggcgcccaatgccatcaaagagatcaggaagtttgcgcagaaggct 24986182
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| || || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 24986181 atgggcactacagatgtcagggtcgatgtgaagctcaacaagcacatctggagcagtggg 24986122
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 24986121 atcaggagtgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaatgacgaggag 24986062
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||||||||| || |||||||| || ||||| || || ||| ||||| | ||||| |||
Sbjct: 24986061 gatgccaaggaagagctctactctctggtcactgtggccgaggtccctcctgagggtttg 24986002
Query: 389 aaagggctggggaccaaggtcgttgacgaaaccgattaagct 430
|| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 24986001 aaggggctgggaaccaaggttgttgacgaaacggattaagct 24985960
Score = 123 bits (62), Expect = 1e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctcca 129
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 24987186 gaagggaggagcggcgaggaaggaggaggtggtgacgagggagtacaccatcaacctcca 24987127
Query: 130 caagcgcctccacggctg 147
||||||||||||| ||||
Sbjct: 24987126 caagcgcctccacagctg 24987109
Score = 83.8 bits (42), Expect = 1e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24991905 gtggtgacgagggagtacaccatcaacctccacaagcgcctccacggctg 24991856
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 gaagggaggagcgtcgaggaaggaggaggtggt 102
||||||||||||| ||||||||||||||||||
Sbjct: 24996099 gaagggaggagcggtgaggaaggaggaggtggt 24996067
>gb|CB685146.1|CB685146 OSJNEf15F06.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15F06 5', mRNA sequence
Length = 555
Score = 319 bits (161), Expect = 1e-084
Identities = 248/277 (89%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 106 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 165
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 166 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 225
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 226 aggccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagca 285
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| |
Sbjct: 286 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacg 345
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||||||||| |||||||| |||||||| || |||||
Sbjct: 346 aggaggatgcgaaggaggagctctactctctggtcac 382
>gb|CF292118.1|CF292118 14ROOT--02-N03.g1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--02-N03, mRNA sequence
Length = 458
Score = 319 bits (161), Expect = 1e-084
Identities = 248/277 (89%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 146 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 205
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 206 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 265
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 266 aggccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagca 325
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| |
Sbjct: 326 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacg 385
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||||||||| |||||||| |||||||| || |||||
Sbjct: 386 aggaggatgcgaaggaggagctctactctctggtcac 422
>gb|D22712.1|D22712 RICC0999A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0999_1A, mRNA sequence
Length = 334
Score = 307 bits (155), Expect = 4e-081
Identities = 246/277 (88%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 45 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 104
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 105 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 164
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 165 aggccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagca 224
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||| ||| |
Sbjct: 225 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggancgacg 284
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||||||||| || ||||| |||||||| || |||||
Sbjct: 285 aggaggatgcgaangaggagctctactctctggtcac 321
>gb|AU032304.1|AU032304 AU032304 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3863_4Z, mRNA sequence
Length = 519
Score = 307 bits (155), Expect = 4e-081
Identities = 246/277 (88%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 3 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 62
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||| ||||||||||||||||||
Sbjct: 63 gatgcaccttcaagaagaaggctcctaatgccatcaaggagntcaggaagtttgcacaga 122
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 123 aggccatgggcaccattgacgtcagggttgatgtgaagctcnacaagcacatctggagca 182
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| |
Sbjct: 183 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacg 242
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||||||||| |||||||| |||||||| || |||||
Sbjct: 243 aggaggatgcgaaggaggagctctactctctggtcac 279
>gb|CF318690.1|CF318690 HD--08-O16.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-O16, mRNA sequence
Length = 646
Score = 303 bits (153), Expect = 6e-080
Identities = 247/277 (89%), Gaps = 1/277 (0%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 152 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 211
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 212 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 271
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 272 aggccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagca 331
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| |
Sbjct: 332 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacg 391
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||| ||||| |||||||| |||||||| || |||||
Sbjct: 392 agga-gatgcgaaggaggagctctactctctggtcac 427
>dbj|AK120884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028N24, full
insert sequence
Length = 811
Score = 303 bits (153), Expect = 6e-080
Identities = 246/277 (88%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 123 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 182
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 183 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 242
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 243 aggccatgggcaccattgacgtcagtgttgatgtgaagctcgacaagcacatctggagca 302
Query: 264 gcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatg 323
|||| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| |
Sbjct: 303 gcggtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacg 362
Query: 324 aggaggatgccaaggaggaactctactcccttgtcac 360
|||||||||| |||||||| |||||||| || |||||
Sbjct: 363 aggaggatgcgaaggaggagctctactctctggtcac 399
>gb|AU162542.1|AU162542 AU162542 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3863, mRNA sequence
Length = 472
Score = 293 bits (148), Expect = 6e-077
Identities = 236/264 (89%), Gaps = 1/264 (0%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 115 aaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 174
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 175 accttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaaggcc 234
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 235 atgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcggt 294
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||||
Sbjct: 295 atccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgaggag 354
Query: 329 gatgccaag-gaggaactctactc 351
||||| ||| ||||| ||||||||
Sbjct: 355 gatgcgaagngaggagctctactc 378
>gb|D15690.1|D15690 RICC1101A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1101A, mRNA sequence
Length = 346
Score = 278 bits (140), Expect = 3e-072
Identities = 182/196 (92%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 110 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 169
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 170 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 229
Query: 204 aggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagca 263
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 230 aggccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagca 289
Query: 264 gcgggatcaggagcgt 279
|||| ||| |||||||
Sbjct: 290 gcggtatccggagcgt 305
>gb|D15859.1|D15859 RICC1423A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1423A, mRNA sequence
Length = 315
Score = 264 bits (133), Expect = 5e-068
Identities = 182/197 (92%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 107 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 166
Query: 144 gctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacaga 203
| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 167 gatgcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacaga 226
Query: 204 aggccatgggcacca-cggacgtcaggatcgatgtgaagctcaacaagcacatctggagc 262
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 227 aggccatgggcaccatttgacgtcagggttgatgtgaagctcaacaagcacatctggagc 286
Query: 263 agcgggatcaggagcgt 279
||||| ||| |||||||
Sbjct: 287 agcggtatccggagcgt 303
>gb|AU092557.1|AU092557 AU092557 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52225, mRNA sequence
Length = 672
Score = 230 bits (116), Expect = 7e-058
Identities = 251/296 (84%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct: 113 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacggatgc 172
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 173 accttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaaggcc 232
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| ||||| | | ||||| |||||||| |||||| |||||||| || ||
Sbjct: 233 atgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatggt 292
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||||
Sbjct: 293 atccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgaggag 352
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 353 gacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 408
>ref|XM_467485.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 372
Score = 230 bits (116), Expect = 7e-058
Identities = 251/296 (84%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct: 34 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacggatgc 93
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 94 accttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaaggcc 153
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||| ||||| | | ||||| |||||||| |||||| |||||||| || ||
Sbjct: 154 atgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatggt 213
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||||
Sbjct: 214 atccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgaggag 273
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 274 gacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 329
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 1721227 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 1721286
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1721287 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 1721346
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 1721347 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 1721406
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 1721407 aggatgcgaaggaggagctctactctctggtcac 1721440
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1719163 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 1719222
Query: 144 g 144
|
Sbjct: 1719223 g 1719223
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0592B08
Length = 131096
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 94535 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 94594
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 94595 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 94654
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 94655 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 94714
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 94715 aggatgcgaaggaggagctctactctctggtcac 94748
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 92471 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 92530
Query: 144 g 144
|
Sbjct: 92531 g 92531
>gb|AACV01013746.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013746, whole
genome shotgun sequence
Length = 13375
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 2159 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 2100
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2099 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 2040
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 2039 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 1980
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 1979 aggatgcgaaggaggagctctactctctggtcac 1946
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 4223 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 4164
Query: 144 g 144
|
Sbjct: 4163 g 4163
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049
genomic scaffold, whole genome shotgun sequence
Length = 3314418
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 699793 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 699852
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 699853 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 699912
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 699913 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 699972
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 699973 aggatgcgaaggaggagctctactctctggtcac 700006
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 697729 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 697788
Query: 144 g 144
|
Sbjct: 697789 g 697789
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 12005914 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 12005973
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 12005974 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 12006033
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 12006034 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 12006093
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 12006094 aggatgcgaaggaggagctctactctctggtcac 12006127
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 12003850 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 12003909
Query: 144 g 144
|
Sbjct: 12003910 g 12003910
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 226 bits (114), Expect = 1e-056
Identities = 189/214 (88%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 12257513 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttgcacagaagg 12257572
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 12257573 ccatgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcg 12257632
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| ||||||| || || | || ||||| || || ||||||| ||||||||| ||||
Sbjct: 12257633 gtatccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagg 12257692
Query: 327 aggatgccaaggaggaactctactcccttgtcac 360
||||||| |||||||| |||||||| || |||||
Sbjct: 12257693 aggatgcgaaggaggagctctactctctggtcac 12257726
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 84 cgaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacg 143
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 12255449 cgaggaaggacgaggtggtcacccgcgagtacaccatcaacctccacaagcgcctccacg 12255508
Query: 144 g 144
|
Sbjct: 12255509 g 12255509
>gb|C28014.1|C28014 C28014 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53705_1A, mRNA sequence
Length = 247
Score = 186 bits (94), Expect = 9e-045
Identities = 122/132 (92%)
Strand = Plus / Plus
Query: 87 ggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggct 146
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct: 105 ggaaggacgaggtggtcacccgnaagtacaccatcaacctccacaagcgcctccacggat 164
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || |||||||||||||||||||||||| |||||||||
Sbjct: 165 gcaccttcaagaagaaggctcctaatgccatcaaggagatcaggaagtttncacagaagg 224
Query: 207 ccatgggcacca 218
||||||||||||
Sbjct: 225 ccatgggcacca 236
>gb|C74710.1|C74710 C74710 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50539_1A,
mRNA sequence
Length = 360
Score = 180 bits (91), Expect = 6e-043
Identities = 151/171 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct: 29 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacggatgc 88
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 89 accttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaaggcc 148
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctgg 259
|||||||| ||||| | | ||||| |||||||| |||||| |||||||
Sbjct: 149 atgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctgg 199
Score = 58.0 bits (29), Expect = 6e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttg 356
|||||||| |||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 248 cgcaagagaaacgatgaggaggacgccaaggagg-actctactctcttg 295
>gb|AU070178.1|AU070178 AU070178 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0965_13A, mRNA sequence
Length = 300
Score = 174 bits (88), Expect = 4e-041
Identities = 122/134 (91%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| ||||| || ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct: 115 aaggacgaggtngtgacccgcgagtacaccatcaacctccacaagcgtctccacggntgc 174
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 175 accttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaaggcc 234
Query: 209 atgggcaccacgga 222
|||||||| |||||
Sbjct: 235 atgggcacaacgga 248
>gb|C27563.1|C27563 C27563 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52225_3A, mRNA sequence
Length = 373
Score = 163 bits (82), Expect = 1e-037
Identities = 109/118 (92%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| ||| | |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 118 gaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacggatgcaccttc 177
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgg 212
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaaggccatgg 235
>dbj|AK105284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E05, full
insert sequence
Length = 2274
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 1253 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 1312
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 1313 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 1372
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 1373 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 1432
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 1433 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 1490
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 116 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 171
>gb|AACV01005297.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005297, whole
genome shotgun sequence
Length = 63269
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 36497 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 36556
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 36557 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 36616
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 36617 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 36676
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 36677 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 36734
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 35360 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 35415
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 4979478 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 4979419
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 4979418 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 4979359
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 4979358 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 4979299
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 4979298 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 4979241
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 4980615 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 4980560
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ2056_H01
Length = 123428
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 70824 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 70765
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 70764 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 70705
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 70704 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 70645
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 70644 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 70587
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 71961 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 71906
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 16292533 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 16292474
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 16292473 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 16292414
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 16292413 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 16292354
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 16292353 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 16292296
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 16293670 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 16293615
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 29745597 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 29745538
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 29745537 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 29745478
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 29745477 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 29745418
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 29745417 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 29745360
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 29746734 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 29746679
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 163 bits (82), Expect = 1e-037
Identities = 199/238 (83%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 29814479 gcaccttcaagaagaaggcgccgaatgccatcaaggagatcaggaagtttgcacagaagg 29814420
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
|||||||||| ||||| | | ||||| |||||||| |||||| |||||||| || |
Sbjct: 29814419 ccatgggcacaacggatatacgcatcgacgtgaagcttaacaaggccatctggaccaatg 29814360
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| |||| || || || | || ||||| || ||| | |||||||| ||||||||||
Sbjct: 29814359 gtatccggagtgtcccaaggcgagtccgtgttagaatctctcgcaagagaaacgatgagg 29814300
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||
Sbjct: 29814299 aggacgccaaggaggagctctactctctggtcacagttgctgagatccctgcagaggg 29814242
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 29815616 aaggacgaggtggtgacccgcgagtacaccatcaacctccacaagcgtctccacgg 29815561
>gb|CF318691.1|CF318691 HD--08-O16.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-O16, mRNA sequence
Length = 515
Score = 119 bits (60), Expect = 2e-024
Identities = 130/152 (85%), Gaps = 1/152 (0%)
Strand = Plus / Minus
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 515 atgggcaccattgacgtcagggttgatgtgaagctcaacaagcacatctggagcagcggt 456
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| ||||||| || || | || ||||| || || ||||||| ||||||||| |||||
Sbjct: 455 atccggagcgttccaaggcgtgtccgtgtcagaattgcccgcaggaggaacgacgagga- 397
Query: 329 gatgccaaggaggaactctactcccttgtcac 360
||||| |||||||| |||||||| || |||||
Sbjct: 396 gatgcgaaggaggagctctactctctggtcac 365
>gb|D23531.1|D23531 RICC2963A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2963_1A, mRNA sequence
Length = 199
Score = 83.8 bits (42), Expect = 1e-013
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| ||| | |||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 105 gaggtggtgacccgcgagtacaccatcaanctccacaagcgtctccacggatgcaccttc 164
Query: 155 aagaagaaggcacccaacgccatcaa 180
|| |||||||| | || ||||||||
Sbjct: 165 aanaagaaggcgncnaatgccatcaa 190
>gb|AU163352.1|AU163352 AU163352 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C62331, mRNA sequence
Length = 442
Score = 81.8 bits (41), Expect = 4e-013
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcg 367
|||||||| |||||||||||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 89 cgcaagagaaacgatgaggaggacgccaaggaggagctctactctctggtcacagttgct 148
Query: 368 gagatccctgccgaggg 384
||||||||||| |||||
Sbjct: 149 gagatccctgcagaggg 165
>gb|AU095317.1|AU095317 AU095317 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61292, mRNA sequence
Length = 443
Score = 75.8 bits (38), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcg 367
|||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| || ||
Sbjct: 92 cgcaagagaaacgatgaggaggacgccaangaggagctctactctctggtcacagttgct 151
Query: 368 gagatccctgccgaggg 384
||||||||||| |||||
Sbjct: 152 gagatccctgcagaggg 168
>gb|AU164653.1|AU164653 AU164653 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0965, mRNA sequence
Length = 478
Score = 75.8 bits (38), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 308 cgcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcg 367
|||||||| |||||||||||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 87 cgcaagagaaacgatgaggaggacgccaaggaggagctctactctctggtcacagttgct 146
Query: 368 gagatccctgccgaggg 384
||||||||| | |||||
Sbjct: 147 gagatccctncagaggg 163
>gb|C28774.1|C28774 C28774 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C62331_1A, mRNA sequence
Length = 372
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 317 aacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
|||||||||||||| ||||||||||| |||||||| || ||||| || || |||||||||
Sbjct: 95 aacgatgaggaggacgccaaggaggagctctactctctggtcacagttgctgagatccct 154
Query: 377 gccgaggg 384
|| |||||
Sbjct: 155 gcagaggg 162
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,011,011
Number of Sequences: 438736
Number of extensions: 1011011
Number of successful extensions: 24364
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23838
Number of HSP's gapped (non-prelim): 524
length of query: 609
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 588
effective length of database: 2,791,206,460
effective search space: 1641229398480
effective search space used: 1641229398480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)