BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004061.1| Oryza sativa (japonica cultivar-group) chro... 523 e-146
dbj|AP005647.3| Oryza sativa (japonica cultivar-group) geno... 523 e-146
gb|AACV01003301.1| Oryza sativa (japonica cultivar-group) c... 523 e-146
ref|XM_464070.1| Oryza sativa (japonica cultivar-group), mRNA 523 e-146
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 523 e-146
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 523 e-146
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 523 e-146
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 523 e-146
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 490 e-136
dbj|AP003761.3| Oryza sativa (japonica cultivar-group) geno... 490 e-136
gb|AACV01014884.1| Oryza sativa (japonica cultivar-group) c... 490 e-136
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 490 e-136
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 490 e-136
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 490 e-136
dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA... 434 e-119
ref|XM_476068.1| Oryza sativa (japonica cultivar-group), p... 276 2e-071
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 276 2e-071
gb|AC135425.3| Oryza sativa (japonica cultivar-group) chrom... 276 2e-071
gb|AC130610.3| Oryza sativa (japonica cultivar-group) chrom... 276 2e-071
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 276 2e-071
gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) c... 262 4e-067
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 262 4e-067
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 262 4e-067
dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA... 260 1e-066
dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA... 260 1e-066
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 260 1e-066
dbj|AP003253.3| Oryza sativa (japonica cultivar-group) geno... 260 1e-066
gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) c... 260 1e-066
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 260 1e-066
ref|NM_192605.1| Oryza sativa (japonica cultivar-group), p... 260 1e-066
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 260 1e-066
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 260 1e-066
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 260 1e-066
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 260 1e-066
dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA... 238 5e-060
gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) c... 238 5e-060
dbj|AP002524.2| Oryza sativa (japonica cultivar-group) geno... 238 5e-060
dbj|AP003118.2| Oryza sativa (japonica cultivar-group) geno... 238 5e-060
ref|NM_189545.1| Oryza sativa (japonica cultivar-group), p... 238 5e-060
ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA 238 5e-060
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 238 5e-060
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 238 5e-060
gb|AU174146.2|AU174146 AU174146 Rice shoot Oryza sativa (ja... 129 3e-027
dbj|AK064742.1| Oryza sativa (japonica cultivar-group) cDNA... 119 3e-024
dbj|AP003312.3| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AACV01001066.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
ref|NM_193983.1| Oryza sativa (japonica cultivar-group), p... 119 3e-024
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 119 3e-024
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA... 88 1e-014
dbj|AP004307.2| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
ref|XM_476821.1| Oryza sativa (japonica cultivar-group), mRNA 88 1e-014
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 88 1e-014
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|D24781.1|D24781 RICR2550A Rice root Oryza sativa (japoni... 82 7e-013
gb|AU091360.1|AU091360 AU091360 Rice panicle shorter than 3... 76 4e-011
dbj|AK061561.1| Oryza sativa (japonica cultivar-group) cDNA... 72 7e-010
dbj|AK068135.1| Oryza sativa (japonica cultivar-group) cDNA... 72 7e-010
dbj|AK105732.1| Oryza sativa (japonica cultivar-group) cDNA... 72 7e-010
gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 ... 72 7e-010
dbj|AK109350.2| Oryza sativa (japonica cultivar-group) cDNA... 72 7e-010
gb|AACV01007426.1| Oryza sativa (japonica cultivar-group) c... 72 7e-010
ref|XM_468996.1| Oryza sativa (japonica cultivar-group), mRNA 72 7e-010
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 72 7e-010
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 72 7e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|C74254.1|C74254 C74254 Rice panicle shorter than 3cm Ory... 70 3e-009
gb|C72292.1|C72292 C72292 Rice panicle at flowering stage O... 64 2e-007
emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC O... 62 7e-007
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 62 7e-007
gb|AACV01025171.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|D24572.1|D24572 RICR2185A Rice root Oryza sativa (japoni... 60 3e-006
gb|AACV01015282.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AC120888.2| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
ref|NT_107135.1| Oryza sativa (japonica cultivar-group) 58 1e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 58 1e-005
dbj|AP004781.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01014554.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01023704.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|CH401266.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CB657602.1|CB657602 OSJNEc13B13.f OSJNEc Oryza sativa (j... 56 4e-005
dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 ... 56 4e-005
gb|AACV01008082.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|C27753.1|C27753 C27753 Rice callus cDNA Oryza sativa (ja... 54 2e-004
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 52 6e-004
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
gb|AC093489.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC148611.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AACV01011058.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
dbj|AK069976.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
dbj|AP005874.3| Oryza sativa (japonica cultivar-group) geno... 46 0.040
gb|AACV01004818.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
ref|XM_466501.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.040
dbj|AP004079.2| Oryza sativa (japonica cultivar-group) geno... 46 0.040
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 46 0.040
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
dbj|AP005417.1| Oryza sativa (japonica cultivar-group) chro... 44 0.16
gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 ... 44 0.16
dbj|AP005429.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AACV01008121.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01027942.1| Oryza sativa (japonica cultivar-group) C... 44 0.16
ref|XM_470006.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.16
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.16
gb|CH401879.1| Oryza sativa (japonica cultivar-group) scaff... 44 0.16
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
>dbj|AP004061.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1407_E09,
*** SEQUENCING IN PROGRESS ***
Length = 133387
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 72005 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 71946
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 71945 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 71886
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 71885 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 71826
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71825 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 71766
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 71765 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 71706
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 71705 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 71646
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 71645 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 71586
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 71585 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 71526
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 71525 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 71486
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 72246 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 72187
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 72186 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 72130
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0026E05
Length = 159860
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 73104 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 73045
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 73044 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 72985
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 72984 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 72925
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 72924 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 72865
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 72864 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 72805
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 72804 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 72745
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 72744 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 72685
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 72684 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 72625
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 72624 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 72585
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 73345 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 73286
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 73285 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 73229
>gb|AACV01003301.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003301, whole
genome shotgun sequence
Length = 18410
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Plus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 6506 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 6565
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 6566 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 6625
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 6626 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 6685
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6686 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 6745
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6746 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 6805
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 6806 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 6865
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 6866 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 6925
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 6926 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 6985
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 6986 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 7025
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 6265 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 6324
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 6325 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 6381
>ref|XM_464070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2085
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Plus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 410 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 469
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 470 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 529
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 530 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 589
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 590 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 649
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 650 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 709
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 710 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 769
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 770 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 829
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 830 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 889
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 890 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 929
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 169 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 228
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 229 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 285
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 2022896 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 2022837
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 2022836 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 2022777
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 2022776 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 2022717
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2022716 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 2022657
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 2022656 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 2022597
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 2022596 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 2022537
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 2022536 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 2022477
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 2022476 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 2022417
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 2022416 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 2022377
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 2023137 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 2023078
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 2023077 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 2023021
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 2044843 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 2044784
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 2044783 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 2044724
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 2044723 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 2044664
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2044663 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 2044604
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 2044603 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 2044544
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 2044543 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 2044484
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 2044483 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 2044424
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 2044423 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 2044364
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 2044363 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 2044324
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 2045084 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 2045025
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 2045024 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 2044968
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 2044843 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 2044784
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 2044783 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 2044724
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 2044723 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 2044664
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2044663 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 2044604
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 2044603 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 2044544
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 2044543 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 2044484
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 2044483 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 2044424
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 2044423 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 2044364
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 2044363 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 2044324
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 2045084 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 2045025
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 2045024 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 2044968
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaacc 525
|||||||||||||||||||||||
Sbjct: 22791712 cgagctcgacctcagcaacaacc 22791734
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 523 bits (264), Expect = e-146
Identities = 456/520 (87%)
Strand = Plus / Minus
Query: 436 tccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgcgcc 495
|||||||||||||||||||||||||||| || |||| |||||| | | || ||| |||
Sbjct: 2022896 tccacctcaactccaaccgcttctgcggcgtcgtgcccgacacgttccgccgcctccgct 2022837
Query: 496 tcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgc 555
| ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct: 2022836 tgctccacgagctcgacctcagcaacaaccgcttcgtcggcgcgttcccggaggtggtgc 2022777
Query: 556 tcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcc 615
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 2022776 tcgcgctcccctcgctccgctacctcgacctcaggttcaacgacttcgagggctccatcc 2022717
Query: 616 cgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcg 675
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2022716 cgcccgcgctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccgca 2022657
Query: 676 ggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaacc 735
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 2022656 accccatcccggccaacctcggcaactcgccggcgagcgtcgtcgtgctcgcgcacaaca 2022597
Query: 736 gcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagatcg 795
|||||| || |||||||||||||| || || | |||||||| |||||||||||||||||
Sbjct: 2022596 acctcgggggatgcatcccgccgtccatcggcaagatggcggacacgctcaacgagatcg 2022537
Query: 796 tcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaagc 855
| ||||||| |||||| ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct: 2022536 tgctcatcgccgacgagctcaccggctgcgtccccacgcaggtggggctgctcaggaagg 2022477
Query: 856 tcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgcccgccgtcggcg 915
| ||||||||||||||||||| ||||||||| ||||||||| ||||| | ||| | ||
Sbjct: 2022476 tgacggtgttcgacgtcagcgacaaccacctgcagggcccgatcccggcgagcgttgccg 2022417
Query: 916 ggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||||||| | || |||||||| |||||||| |||||||
Sbjct: 2022416 ggatggccgccgtcgagcagctcgacgtcgccaggaacct 2022377
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 2023137 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 2023078
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 2023077 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 2023021
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaacc 525
|||||||||||||||||||||||
Sbjct: 23000259 cgagctcgacctcagcaacaacc 23000281
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 389027 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 389085
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 389086 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 389145
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 389146 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 389205
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 389206 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 389265
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 389266 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 389324
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 389325 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 389384
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 389385 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 389444
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 389445 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 389504
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 389505 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 389562
Score = 99.6 bits (50), Expect = 3e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 208 gcggcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaac 267
|||||||||| ||||| |||||||||| || ||||||||||||||||||||| | |||
Sbjct: 388811 gcggcgtacgtcgcgctccaggcgtggaggcgcacggccatcttctccgacccggcgaac 388870
Query: 268 ttcacctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
|||||| |||||||| | |||||| ||||||||| ||||||||| | | ||||||| ||
Sbjct: 388871 ttcaccgccaactggtccggccccgacgtgtgcggctacaacggcgtgttctgcgcggcg 388930
Query: 328 cggccctccgacgg 341
| ||| |||||||
Sbjct: 388931 caccccaccgacgg 388944
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0018H04
Length = 142053
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 1781 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 1839
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1840 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 1899
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 1900 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 1959
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 1960 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 2019
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 2020 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 2078
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 2079 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 2138
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 2139 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 2198
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2199 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 2258
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 2259 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 2316
Score = 99.6 bits (50), Expect = 3e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 208 gcggcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaac 267
|||||||||| ||||| |||||||||| || ||||||||||||||||||||| | |||
Sbjct: 1565 gcggcgtacgtcgcgctccaggcgtggaggcgcacggccatcttctccgacccggcgaac 1624
Query: 268 ttcacctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
|||||| |||||||| | |||||| ||||||||| ||||||||| | | ||||||| ||
Sbjct: 1625 ttcaccgccaactggtccggccccgacgtgtgcggctacaacggcgtgttctgcgcggcg 1684
Query: 328 cggccctccgacgg 341
| ||| |||||||
Sbjct: 1685 caccccaccgacgg 1698
>gb|AACV01014884.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014884, whole
genome shotgun sequence
Length = 65563
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Minus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 65432 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 65374
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 65373 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 65314
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 65313 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 65254
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 65253 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 65194
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 65193 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 65135
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 65134 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 65075
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 65074 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 65015
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 65014 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 64955
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 64954 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 64897
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 10666540 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 10666598
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10666599 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 10666658
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 10666659 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 10666718
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 10666719 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 10666778
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 10666779 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 10666837
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 10666838 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 10666897
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 10666898 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 10666957
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10666958 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 10667017
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 10667018 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 10667075
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 497 cctccacgagctcgacctcagcaacaaccgcttcgtc 533
||||||||||||||||| ||||||||||||| |||||
Sbjct: 5595795 cctccacgagctcgaccacagcaacaaccgcctcgtc 5595831
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 429 gcgctgctccacctcaactccaaccgcttctgc 461
|||||||||||||||||||||| ||||||||||
Sbjct: 5595750 gcgctgctccacctcaactccacccgcttctgc 5595782
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 28365277 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 28365335
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 28365336 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 28365395
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 28365396 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 28365455
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 28365456 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 28365515
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 28365516 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 28365574
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 28365575 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 28365634
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 28365635 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 28365694
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 28365695 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 28365754
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 28365755 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 28365812
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 497 cctccacgagctcgacctcagcaacaaccgcttcgtc 533
||||||||||||||||| ||||||||||||| |||||
Sbjct: 23294532 cctccacgagctcgaccacagcaacaaccgcctcgtc 23294568
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 429 gcgctgctccacctcaactccaaccgcttctgc 461
|||||||||||||||||||||| ||||||||||
Sbjct: 23294487 gcgctgctccacctcaactccacccgcttctgc 23294519
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 490 bits (247), Expect = e-136
Identities = 472/539 (87%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 420 cccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacg 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 29238983 cccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctccccgacac- 29239041
Query: 480 ctgctcc-acctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgc 538
|| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 29239042 cttctcccacctcaggctcctccacgagctcgacatcagcaacaaccgcttcgtcggcgg 29239101
Query: 539 cttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacga 598
|||||| | || |||||| |||| || |||||| | |||||||||||| | ||||||||
Sbjct: 29239102 cttcccggaggtggtgctctcgctgccgtcgctcaggtacctcgacctcaggttcaacga 29239161
Query: 599 cttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaa 658
|||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 29239162 cttcgagggcgccatcccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaa 29239221
Query: 659 ctccaaccgcctc-cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgc 717
||||||||||||| |||| ||||||||| |||||||||| | ||||||||| |||||
Sbjct: 29239222 ctccaaccgcctcacgcgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcg 29239280
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcgg 777
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct: 29239281 tcgtgctcgcgcacaaccgcctcgggggttgcatcccgccgtccatcgggaggatggccg 29239340
Query: 778 ccacgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcagg 837
||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 29239341 agacgctcaacgaaatcgtgctcatcgacgacgagctcaccggatgcatcccgccgcagg 29239400
Query: 838 tcggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc 897
|||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 29239401 tcgggctgctcaggaaggtgacggtgttcgacgtcagcggcaaccacctccagggcccgc 29239460
Query: 898 -tcccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||||| | ||||| ||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 29239461 ttcccgggag-cgtcgccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 29239518
Score = 99.6 bits (50), Expect = 3e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 208 gcggcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaac 267
|||||||||| ||||| |||||||||| || ||||||||||||||||||||| | |||
Sbjct: 29238767 gcggcgtacgtcgcgctccaggcgtggaggcgcacggccatcttctccgacccggcgaac 29238826
Query: 268 ttcacctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
|||||| |||||||| | |||||| ||||||||| ||||||||| | | ||||||| ||
Sbjct: 29238827 ttcaccgccaactggtccggccccgacgtgtgcggctacaacggcgtgttctgcgcggcg 29238886
Query: 328 cggccctccgacgg 341
| ||| |||||||
Sbjct: 29238887 caccccaccgacgg 29238900
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 497 cctccacgagctcgacctcagcaacaaccgcttcgtc 533
||||||||||||||||| ||||||||||||| |||||
Sbjct: 24244745 cctccacgagctcgaccacagcaacaaccgcctcgtc 24244781
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 429 gcgctgctccacctcaactccaaccgcttctgc 461
|||||||||||||||||||||| ||||||||||
Sbjct: 24244700 gcgctgctccacctcaactccacccgcttctgc 24244732
>dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G10, full
insert sequence
Length = 1447
Score = 434 bits (219), Expect = e-119
Identities = 406/463 (87%), Gaps = 4/463 (0%)
Strand = Plus / Plus
Query: 495 ctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtg 554
|||||||||||||||||| |||||||||||||||||||||||| |||||| | || |||
Sbjct: 29 ctcctccacgagctcgacatcagcaacaaccgcttcgtcggcggcttcccggaggtggtg 88
Query: 555 ctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatc 614
||| |||| || |||||| | |||||||||||| | |||||||||||||||||| |||||
Sbjct: 89 ctctcgctgccgtcgctcaggtacctcgacctcaggttcaacgacttcgagggcgccatc 148
Query: 615 ccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctc-cg 673
||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 149 ccgcccaagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctcacg 208
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
|| ||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||||
Sbjct: 209 cgc-cccatcccgcccaacctcgggagctcgccggcgtccgtcgtcgtgctcgcgcacaa 267
Query: 734 ccgcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgagat 793
||||||||| || |||||||||||||| || ||||||||||| | ||||||||||| ||
Sbjct: 268 ccgcctcgggggttgcatcccgccgtccatcgggaggatggccgagacgctcaacgaaat 327
Query: 794 cgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctcacgaa 853
||| |||||||||||||| |||||||| ||| |||||||||||||||| ||||||| |||
Sbjct: 328 cgtgctcatcgacgacgagctcaccggatgcatcccgccgcaggtcgggctgctcaggaa 387
Query: 854 gctcacggtgttcgacgtcagcggcaaccaccttcagggcccgc-tcccgcccgccgtcg 912
| | ||||||||||||||||||||||||||||| |||||||||| ||||| | |||||
Sbjct: 388 ggtgacggtgttcgacgtcagcggcaaccacctccagggcccgcttcccgggag-cgtcg 446
Query: 913 gcgggatggccgtcctccagcagctcaacgtcgccgggaacct 955
||| |||||| | || |||||||| ||||||||||||||||
Sbjct: 447 ccggcttggccgccgtcgagcagctcgacgtcgccgggaacct 489
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1245
Score = 276 bits (139), Expect = 2e-071
Identities = 376/455 (82%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 365 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 424
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 425 tccgccgcctccgccgcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcct 484
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
||||| ||| |||||||| ||||| ||||| | | |||||||||||||| ||||||||
Sbjct: 485 tcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgact 544
Query: 601 tcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaact 660
|||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 545 tcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaacc 604
Query: 661 ccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcg 720
||||||||||||| || |||| | |||| |||||||||| || |||||||| |||
Sbjct: 605 acaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatcg 664
Query: 721 tgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcca 780
| ||||| ||||| | ||||||||||| ||||| || | |||| ||| ||||||
Sbjct: 665 tcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcca 724
Query: 781 cgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcg 840
|||||||||||||| |||||||| || | | |||| | |||||||||||| ||||||
Sbjct: 725 cgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcg 784
Query: 841 gcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||| | || |||| |||||||||||||||
Sbjct: 785 gcttgctccgggaggtcaccgtgttcgacgtcagc 819
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 145 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 204
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 205 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 262
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 276 bits (139), Expect = 2e-071
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 834418 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 834359
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 834358 tccgccgcctccgccgcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcct 834299
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
||||| ||| |||||||| ||||| ||||| | | |||||||||||||| ||||||||
Sbjct: 834298 tcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgact 834239
Query: 601 tcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaact 660
|||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 834238 tcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaacc 834179
Query: 661 ccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcg 720
||||||||||||| || |||| | |||| |||||||||| || |||||||| |||
Sbjct: 834178 acaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatcg 834119
Query: 721 tgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcca 780
| ||||| ||||| | ||||||||||| ||||| || | |||| ||| ||||||
Sbjct: 834118 tcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcca 834059
Query: 781 cgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcg 840
|||||||||||||| |||||||| || | | |||| | |||||||||||| ||||||
Sbjct: 834058 cgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcg 833999
Query: 841 gcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||| | || |||| |||||||||||||||
Sbjct: 833998 gcttgctccgggaggtcaccgtgttcgacgtcagc 833964
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 834638 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 834579
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 834578 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 834521
Score = 50.1 bits (25), Expect = 0.003
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc- 561
||||||||||||||||||||||| |||| |||| | ||||| || | | ||| || |
Sbjct: 1468166 cgagctcgacctcagcaacaacctcttctccggcccgttcccggcggcggcgct-gctca 1468224
Query: 562 tcccctcgctccgctacctcgacctccgcttcaacgacttc 602
|||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 1468225 tcccgtcgctcgtctacctcgacctccgcttcaacgccttc 1468265
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
complete sequence
Length = 187956
Score = 276 bits (139), Expect = 2e-071
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 29554 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 29495
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 29494 tccgccgcctccgccgcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcct 29435
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
||||| ||| |||||||| ||||| ||||| | | |||||||||||||| ||||||||
Sbjct: 29434 tcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgact 29375
Query: 601 tcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaact 660
|||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 29374 tcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaacc 29315
Query: 661 ccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcg 720
||||||||||||| || |||| | |||| |||||||||| || |||||||| |||
Sbjct: 29314 acaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatcg 29255
Query: 721 tgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcca 780
| ||||| ||||| | ||||||||||| ||||| || | |||| ||| ||||||
Sbjct: 29254 tcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcca 29195
Query: 781 cgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcg 840
|||||||||||||| |||||||| || | | |||| | |||||||||||| ||||||
Sbjct: 29194 cgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcg 29135
Query: 841 gcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||| | || |||| |||||||||||||||
Sbjct: 29134 gcttgctccgggaggtcaccgtgttcgacgtcagc 29100
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 29774 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 29715
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 29714 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 29657
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
complete sequence
Length = 145070
Score = 276 bits (139), Expect = 2e-071
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 125151 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 125092
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 125091 tccgccgcctccgccgcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcct 125032
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
||||| ||| |||||||| ||||| ||||| | | |||||||||||||| ||||||||
Sbjct: 125031 tcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgact 124972
Query: 601 tcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaact 660
|||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 124971 tcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaacc 124912
Query: 661 ccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcg 720
||||||||||||| || |||| | |||| |||||||||| || |||||||| |||
Sbjct: 124911 acaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatcg 124852
Query: 721 tgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcca 780
| ||||| ||||| | ||||||||||| ||||| || | |||| ||| ||||||
Sbjct: 124851 tcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcca 124792
Query: 781 cgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcg 840
|||||||||||||| |||||||| || | | |||| | |||||||||||| ||||||
Sbjct: 124791 cgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcg 124732
Query: 841 gcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||| | || |||| |||||||||||||||
Sbjct: 124731 gcttgctccgggaggtcaccgtgttcgacgtcagc 124697
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 125371 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 125312
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 125311 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 125254
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 276 bits (139), Expect = 2e-071
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 4757146 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 4757087
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4757086 tccgccgcctccgccgcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcct 4757027
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
||||| ||| |||||||| ||||| ||||| | | |||||||||||||| ||||||||
Sbjct: 4757026 tcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgact 4756967
Query: 601 tcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaact 660
|||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 4756966 tcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaacc 4756907
Query: 661 ccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcg 720
||||||||||||| || |||| | |||| |||||||||| || |||||||| |||
Sbjct: 4756906 acaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatcg 4756847
Query: 721 tgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcca 780
| ||||| ||||| | ||||||||||| ||||| || | |||| ||| ||||||
Sbjct: 4756846 tcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcca 4756787
Query: 781 cgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcg 840
|||||||||||||| |||||||| || | | |||| | |||||||||||| ||||||
Sbjct: 4756786 cgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcg 4756727
Query: 841 gcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||| | || |||| |||||||||||||||
Sbjct: 4756726 gcttgctccgggaggtcaccgtgttcgacgtcagc 4756692
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 4757366 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 4757307
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 4757306 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 4757249
Score = 50.1 bits (25), Expect = 0.003
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc- 561
||||||||||||||||||||||| |||| |||| | ||||| || | | ||| || |
Sbjct: 5390894 cgagctcgacctcagcaacaacctcttctccggcccgttcccggcggcggcgct-gctca 5390952
Query: 562 tcccctcgctccgctacctcgacctccgcttcaacgacttc 602
|||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 5390953 tcccgtcgctcgtctacctcgacctccgcttcaacgccttc 5390993
>gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011020, whole
genome shotgun sequence
Length = 35223
Score = 262 bits (132), Expect = 4e-067
Identities = 376/456 (82%), Gaps = 1/456 (0%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 24220 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 24279
Query: 481 tgctccacctgcgcct-cctccacgagctcgacctcagcaacaaccgcttcgtcggcgcc 539
| | || ||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24280 tccgccgcctccgccggcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcc 24339
Query: 540 ttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgac 599
|||||| ||| |||||||| ||||| ||||| | | |||||||||||||| |||||||
Sbjct: 24340 ttcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgac 24399
Query: 600 ttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaac 659
||||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 24400 ttcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaac 24459
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||||||||| || |||| | |||| |||||||||| || |||||||| ||
Sbjct: 24460 cacaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatc 24519
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcc 779
|| ||||| ||||| | ||||||||||| ||||| || | |||| ||| |||||
Sbjct: 24520 gtcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcc 24579
Query: 780 acgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtc 839
||||||||||||||| |||||||| || | | |||| | |||||||||||| |||||
Sbjct: 24580 acgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtc 24639
Query: 840 ggcctgctcacgaagctcacggtgttcgacgtcagc 875
||| ||||| | || |||| |||||||||||||||
Sbjct: 24640 ggcttgctccgggaggtcaccgtgttcgacgtcagc 24675
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 23999 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 24058
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 24059 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 24116
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 262 bits (132), Expect = 4e-067
Identities = 376/456 (82%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 4648552 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 4648493
Query: 481 tgctccacctgcgcct-cctccacgagctcgacctcagcaacaaccgcttcgtcggcgcc 539
| | || ||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4648492 tccgccgcctccgccggcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcc 4648433
Query: 540 ttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgac 599
|||||| ||| |||||||| ||||| ||||| | | |||||||||||||| |||||||
Sbjct: 4648432 ttcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgac 4648373
Query: 600 ttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaac 659
||||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 4648372 ttcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaac 4648313
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||||||||| || |||| | |||| |||||||||| || |||||||| ||
Sbjct: 4648312 cacaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatc 4648253
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcc 779
|| ||||| ||||| | ||||||||||| ||||| || | |||| ||| |||||
Sbjct: 4648252 gtcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcc 4648193
Query: 780 acgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtc 839
||||||||||||||| |||||||| || | | |||| | |||||||||||| |||||
Sbjct: 4648192 acgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtc 4648133
Query: 840 ggcctgctcacgaagctcacggtgttcgacgtcagc 875
||| ||||| | || |||| |||||||||||||||
Sbjct: 4648132 ggcttgctccgggaggtcaccgtgttcgacgtcagc 4648097
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 4648773 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 4648714
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 4648713 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 4648656
Score = 50.1 bits (25), Expect = 0.003
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc- 561
||||||||||||||||||||||| |||| |||| | ||||| || | | ||| || |
Sbjct: 5267635 cgagctcgacctcagcaacaacctcttctccggcccgttcccggcggcggcgct-gctca 5267693
Query: 562 tcccctcgctccgctacctcgacctccgcttcaacgacttc 602
|||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 5267694 tcccgtcgctcgtctacctcgacctccgcttcaacgccttc 5267734
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 262 bits (132), Expect = 4e-067
Identities = 376/456 (82%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |
Sbjct: 4648552 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcctcgtcccggacgccc 4648493
Query: 481 tgctccacctgcgcct-cctccacgagctcgacctcagcaacaaccgcttcgtcggcgcc 539
| | || ||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4648492 tccgccgcctccgccggcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcc 4648433
Query: 540 ttccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgac 599
|||||| ||| |||||||| ||||| ||||| | | |||||||||||||| |||||||
Sbjct: 4648432 ttcccctccgccgtgctcgacctcccggcgctcaggttcctcgacctccgctacaacgac 4648373
Query: 600 ttcgagggccccatcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaac 659
||||||||| || |||||| | ||| ||||||| |||||||||||||||| ||||||||
Sbjct: 4648372 ttcgagggcgccgtcccgcgccagctgttcgacctcccgctcgacgccatcttcctcaac 4648313
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||||||||| || |||| | |||| |||||||||| || |||||||| ||
Sbjct: 4648312 cacaaccgcctccgcttcgccctccccgacaacttcggcaactcccccgcctccgtcatc 4648253
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggcc 779
|| ||||| ||||| | ||||||||||| ||||| || | |||| ||| |||||
Sbjct: 4648252 gtcctcgccggcaaccacttcggcggctgcctcccggcgagcctcgggaacatgtcggcc 4648193
Query: 780 acgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtc 839
||||||||||||||| |||||||| || | | |||| | |||||||||||| |||||
Sbjct: 4648192 acgctcaacgagatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtc 4648133
Query: 840 ggcctgctcacgaagctcacggtgttcgacgtcagc 875
||| ||||| | || |||| |||||||||||||||
Sbjct: 4648132 ggcttgctccgggaggtcaccgtgttcgacgtcagc 4648097
Score = 83.8 bits (42), Expect = 2e-013
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 4648773 gcgtacgtggcgctgcagacgtggaagcagacggccatcttctccgaccccaagaacctc 4648714
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| |||||| ||||||||| |||| |||| ||| |||||||||||
Sbjct: 4648713 accgccgactgggtcggccccgccgtgtgcgcctacaccggcgtcttctgcgcgccgc 4648656
Score = 50.1 bits (25), Expect = 0.003
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 503 cgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc- 561
||||||||||||||||||||||| |||| |||| | ||||| || | | ||| || |
Sbjct: 5267635 cgagctcgacctcagcaacaacctcttctccggcccgttcccggcggcggcgct-gctca 5267693
Query: 562 tcccctcgctccgctacctcgacctccgcttcaacgacttc 602
|||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 5267694 tcccgtcgctcgtctacctcgacctccgcttcaacgccttc 5267734
>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
insert sequence
Length = 2042
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 556 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 615
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 616 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 675
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 676 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 735
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 736 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 795
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 796 cgacttcggcggctgcctcccggcgtc 822
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 434 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 490
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 491 gccgtgctccacgccaactccaaccgcttctgcgg 525
>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
insert sequence
Length = 1985
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 557 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 616
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 617 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 676
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 677 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 736
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 737 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 796
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 797 cgacttcggcggctgcctcccggcgtc 823
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 435 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 491
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 492 gccgtgctccacgccaactccaaccgcttctgcgg 526
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1103C09
Length = 163996
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 7603 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 7662
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 7663 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 7722
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7723 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 7782
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 7783 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 7842
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 7843 cgacttcggcggctgcctcccggcgtc 7869
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 7481 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 7537
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 7538 gccgtgctccacgccaactccaaccgcttctgcgg 7572
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0451D05
Length = 148381
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 68647 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 68706
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 68707 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 68766
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 68767 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 68826
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 68827 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 68886
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 68887 cgacttcggcggctgcctcccggcgtc 68913
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 68525 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 68581
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 68582 gccgtgctccacgccaactccaaccgcttctgcgg 68616
>gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001725, whole
genome shotgun sequence
Length = 24955
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Minus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 2409 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 2350
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 2349 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 2290
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2289 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 2230
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 2229 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 2170
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 2169 cgacttcggcggctgcctcccggcgtc 2143
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 369 aaccacgccgacatcgcgggccacatccccg 399
|||||||||||||| ||||||||| ||||||
Sbjct: 2532 aaccacgccgacatggcgggccacctccccg 2502
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||| |||||||||||||||||||||
Sbjct: 2470 tgctccacgccaactccaaccgcttctgcgg 2440
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 23360622 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 23360681
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 23360682 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 23360741
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 23360742 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 23360801
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 23360802 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 23360861
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 23360862 cgacttcggcggctgcctcccggcgtc 23360888
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 4177755 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 4177696
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 4177695 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 4177636
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 4177635 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 4177576
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 4177575 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 4177517
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 4177516 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 4177457
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 4177456 gtcctcgcgcacaacagcttcggcggctgcctcccg 4177421
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 14419763 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 14419705
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 14419704 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 14419645
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 14419644 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 14419597
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 4177966 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 4177907
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 4177906 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 4177849
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 14419832 tgctccacctcaactccaaccgcttctgcgg 14419802
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 23360500 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 23360556
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 23360557 gccgtgctccacgccaactccaaccgcttctgcgg 23360591
>ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1713
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 498 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 557
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 558 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 617
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 677
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 678 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 737
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 738 cgacttcggcggctgcctcccggcgtc 764
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 376 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 432
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 433 gccgtgctccacgccaactccaaccgcttctgcgg 467
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 6278854 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 6278913
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 6278914 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 6278973
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6278974 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 6279033
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 6279034 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 6279093
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 6279094 cgacttcggcggctgcctcccggcgtc 6279120
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 6278732 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 6278788
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 6278789 gccgtgctccacgccaactccaaccgcttctgcgg 6278823
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 6190708 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 6190767
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 6190768 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 6190827
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6190828 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 6190887
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 6190888 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 6190947
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 6190948 cgacttcggcggctgcctcccggcgtc 6190974
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||| |||||||||||||||||||||
Sbjct: 6190647 tgctccacgccaactccaaccgcttctgcgg 6190677
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccg 399
|||||||||||||| ||||||||| ||||||
Sbjct: 6190585 aaccacgccgacatggcgggccacctccccg 6190615
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 22815831 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 22815890
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 22815891 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 22815950
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22815951 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 22816010
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 22816011 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 22816070
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 22816071 cgacttcggcggctgcctcccggcgtc 22816097
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 4217181 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 4217122
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 4217121 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 4217062
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 4217061 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 4217002
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 4217001 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 4216943
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 4216942 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 4216883
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 4216882 gtcctcgcgcacaacagcttcggcggctgcctcccg 4216847
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 14348283 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 14348225
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 14348224 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 14348165
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 14348164 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 14348117
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 4217392 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 4217333
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 4217332 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 4217275
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 14348352 tgctccacctcaactccaaccgcttctgcgg 14348322
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||| |||||||||||||||||||||
Sbjct: 22815770 tgctccacgccaactccaaccgcttctgcgg 22815800
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccg 399
|||||||||||||| ||||||||| ||||||
Sbjct: 22815708 aaccacgccgacatggcgggccacctccccg 22815738
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 260 bits (131), Expect = 1e-066
Identities = 233/267 (87%)
Strand = Plus / Plus
Query: 494 cctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
|||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||
Sbjct: 23281905 cctcctccacgagctcgacctcagcaacaaccgcctcgtcggcgcgttcccggacgtcgt 23281964
Query: 554 gctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat 613
|||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 23281965 gctccggctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgt 23282024
Query: 614 cccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccg 673
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 23282025 cccggccgagctgttcgaccgcccgctcgacgccatcttcctcaactccaaccgcctccg 23282084
Query: 674 cgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaa 733
| | ||||| | |||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 23282085 cttccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaa 23282144
Query: 734 ccgcctcggcggctgcatcccgccgtc 760
| | ||||||||||| ||||| ||||
Sbjct: 23282145 cgacttcggcggctgcctcccggcgtc 23282171
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 4179953 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 4179894
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 4179893 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 4179834
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 4179833 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 4179774
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 4179773 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 4179715
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 4179714 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 4179655
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 4179654 gtcctcgcgcacaacagcttcggcggctgcctcccg 4179619
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 14421981 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 14421923
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 14421922 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 14421863
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 14421862 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 14421815
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 4180164 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 4180105
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 4180104 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 4180047
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 14422050 tgctccacctcaactccaaccgcttctgcgg 14422020
Score = 50.1 bits (25), Expect = 0.003
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccgccgacctccccctcggcgtgcccgacctg 428
|||||||||||||| ||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 23281783 aaccacgccgacatggcgggccacctccccgacgagctcggcctgctcg---ccgacctc 23281839
Query: 429 gcgctgctccacctcaactccaaccgcttctgcgg 463
|| |||||||| |||||||||||||||||||||
Sbjct: 23281840 gccgtgctccacgccaactccaaccgcttctgcgg 23281874
>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full
insert sequence
Length = 2207
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 461 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 520
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 521 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 580
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 581 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 640
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 641 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 699
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 700 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 759
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 760 gtcctcgcgcacaacagcttcggcggctgcctcccg 795
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 250 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 309
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 310 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 367
>gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000298, whole
genome shotgun sequence
Length = 12784
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 6749 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 6690
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 6689 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 6630
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 6629 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 6570
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 6569 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 6511
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 6510 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 6451
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 6450 gtcctcgcgcacaacagcttcggcggctgcctcccg 6415
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 6960 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 6901
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 6900 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 6843
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0406H10
Length = 156419
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 126924 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 126865
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 126864 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 126805
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 126804 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 126745
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 126744 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 126686
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 126685 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 126626
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 126625 gtcctcgcgcacaacagcttcggcggctgcctcccg 126590
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 127135 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 127076
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 127075 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 127018
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1174_D05
Length = 128525
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 17920 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 17861
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 17860 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 17801
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 17800 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 17741
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 17740 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 17682
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 17681 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 17622
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 17621 gtcctcgcgcacaacagcttcggcggctgcctcccg 17586
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 18131 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 18072
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 18071 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 18014
>ref|NM_189545.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1740
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 359 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 418
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 419 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 478
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 479 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 538
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 539 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 597
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 598 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 657
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 658 gtcctcgcgcacaacagcttcggcggctgcctcccg 693
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 148 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 207
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 208 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 265
>ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2207
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 461 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 520
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 521 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 580
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 581 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 640
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 641 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 699
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 700 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 759
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 760 gtcctcgcgcacaacagcttcggcggctgcctcccg 795
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 250 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 309
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 310 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 367
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 4177595 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 4177536
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 4177535 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 4177476
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 4177475 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 4177416
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 4177415 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 4177357
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 4177356 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 4177297
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 4177296 gtcctcgcgcacaacagcttcggcggctgcctcccg 4177261
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 4177806 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 4177747
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 4177746 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 4177689
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 238 bits (120), Expect = 5e-060
Identities = 284/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct: 4217181 ccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccc 4217122
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 4217121 tccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggt 4217062
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgact 600
|||||| || ||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct: 4217061 tccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgact 4217002
Query: 601 tcgagggccccatcccgccgcc-gctcttcgaccgcccgctcgacgccatcctcctcaac 659
|||||||| | || ||||| ||| |||||||| ||||||||||||||| ||||||||
Sbjct: 4217001 tcgagggcggggtgcc-ccgccagctgttcgaccggccgctcgacgccatcttcctcaac 4216943
Query: 660 tccaaccgcctccgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctc 719
||||||| ||||| | |||||| |||| ||||||||||||||| |||||| ||
Sbjct: 4216942 cacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatc 4216883
Query: 720 gtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| |||||||||||| || ||||||||||| |||||
Sbjct: 4216882 gtcctcgcgcacaacagcttcggcggctgcctcccg 4216847
Score = 67.9 bits (34), Expect = 1e-008
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
||||||| |||||||||| |||||| ||| |||||||||||||||||| |||| ||
Sbjct: 4217392 gcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctc 4217333
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgc 328
||| || |||||| ||||||| |||||||| |||| |||| | | |||||||||||
Sbjct: 4217332 accgccgactgggtgggccccgacgtgtgcaactacaccggcgtgttctgcgcgccgc 4217275
>gb|AU174146.2|AU174146 AU174146 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0592, mRNA sequence
Length = 361
Score = 129 bits (65), Expect = 3e-027
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 219 gcgtacgccgcgctccaggcgtggaagcagacggccatcttctccgacccctccaacttc 278
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
||| ||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 279 accgccagctgggtcggcgccaacgtctgcgcctacaacggcgtctactgcgcgccg 335
>dbj|AK064742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D10, full
insert sequence
Length = 1799
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 587 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 645
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 646 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 705
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 706 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 753
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 518 tgctccacctcaactccaaccgcttctgcgg 548
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0025H06
Length = 151547
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 83378 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 83320
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 83319 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 83260
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 83259 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 83212
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 83447 tgctccacctcaactccaaccgcttctgcgg 83417
>gb|AACV01001066.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001066, whole
genome shotgun sequence
Length = 30927
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 29051 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 28993
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 28992 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 28933
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 28932 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 28885
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 29120 tgctccacctcaactccaaccgcttctgcgg 29090
>ref|NM_193983.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1512
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 494 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 552
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 553 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 612
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 613 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 660
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 425 tgctccacctcaactccaaccgcttctgcgg 455
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 2928988 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 2928930
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 2928929 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 2928870
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 2928869 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 2928822
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 2929057 tgctccacctcaactccaaccgcttctgcgg 2929027
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 119 bits (60), Expect = 3e-024
Identities = 143/168 (85%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||| |||||||||| ||||||| || |||||| |||
Sbjct: 2731788 acgagctcgacgtcagcaacaaccgcctcgtcggcgcgttccccggcgcggtgctc-cgc 2731730
Query: 562 -tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccg 620
||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct: 2731729 gtccccgagctcagctacctcgacatccggttcaacgacttcgacggccccattccgccg 2731670
Query: 621 ccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgc 668
||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 2731669 gagctcttcctccgcccctacgacgccatcttcctcaacaacaaccgc 2731622
Score = 61.9 bits (31), Expect = 7e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 2731857 tgctccacctcaactccaaccgcttctgcgg 2731827
>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full
insert sequence
Length = 1302
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcggggtgctgccggacacgctgctccacctgc 492
||||||||||||||||||||||||||| ||| | ||| || ||||| || | | | ||
Sbjct: 411 tgctccacctcaactccaaccgcttctccggcgcgctccccgacaccctccccaagctct 470
Query: 493 gcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccc 544
||||||||||||||||||| |||||||||||||| ||| ||||| ||||||
Sbjct: 471 ccctcctccacgagctcgacgtcagcaacaaccgcctcgccggcggcttccc 522
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 682 tcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgc 727
|||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 660 tcccggccaacctcggcaactcgccggcgtcggtcatcgtgctcgc 705
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,892,358
Number of Sequences: 438736
Number of extensions: 1892358
Number of successful extensions: 20728
Number of sequences better than 0.5: 119
Number of HSP's better than 0.5 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17900
Number of HSP's gapped (non-prelim): 2714
length of query: 1089
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1068
effective length of database: 2,791,206,460
effective search space: 2981008499280
effective search space used: 2981008499280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)