BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.3
(1842 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP005245.3| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
dbj|AP005254.3| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
gb|AACV01001813.1| Oryza sativa (japonica cultivar-group) c... 70 5e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 5e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 ... 64 3e-007
dbj|AP005308.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
dbj|AP005575.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-007
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 64 3e-007
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 64 3e-007
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CB654797.1|CB654797 OSJNEc07J11.f OSJNEc Oryza sativa (j... 60 5e-006
gb|CB654798.1|CB654798 OSJNEc07J11.r OSJNEc Oryza sativa (j... 60 5e-006
dbj|AK072861.1| Oryza sativa (japonica cultivar-group) cDNA... 60 5e-006
dbj|AP003909.3| Oryza sativa (japonica cultivar-group) geno... 60 5e-006
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 60 5e-006
dbj|AP006461.3| Oryza sativa (japonica cultivar-group) geno... 60 5e-006
gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) c... 60 5e-006
gb|AACV01018675.1| Oryza sativa (japonica cultivar-group) c... 60 5e-006
ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-006
ref|XM_482839.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-006
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 60 5e-006
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 60 5e-006
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 60 5e-006
gb|CB646631.1|CB646631 OSJNEb09D12.r OSJNEb Oryza sativa (j... 56 7e-005
gb|CB647244.1|CB647244 OSJNEb10B13.r OSJNEb Oryza sativa (j... 56 7e-005
gb|CB650580.1|CB650580 OSJNEb15B16.r OSJNEb Oryza sativa (j... 56 7e-005
gb|CB654161.1|CB654161 OSJNEc05O08.r OSJNEc Oryza sativa (j... 56 7e-005
gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (j... 56 7e-005
gb|CB670262.1|CB670262 OSJNEe03E01.r OSJNEe Oryza sativa (j... 56 7e-005
gb|AF488521.1| Oryza sativa Cyt-P450 monooxygenase (PM-I) m... 56 7e-005
dbj|AK067905.1| Oryza sativa (japonica cultivar-group) cDNA... 56 7e-005
dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA... 56 7e-005
dbj|AK099637.1| Oryza sativa (japonica cultivar-group) cDNA... 56 7e-005
dbj|AK107584.1| Oryza sativa (japonica cultivar-group) cDNA... 56 7e-005
gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 ... 56 7e-005
gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 ... 56 7e-005
dbj|AP005570.3| Oryza sativa (japonica cultivar-group) geno... 56 7e-005
gb|AACV01001578.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
gb|AACV01008267.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
gb|AACV01018823.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
gb|AACV01018824.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
gb|AACV01020088.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 56 7e-005
ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-005
ref|NM_193526.1| Oryza sativa (japonica cultivar-group), p... 56 7e-005
ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-005
ref|XM_483259.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-005
ref|XM_483262.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-005
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 56 7e-005
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 56 7e-005
ref|XM_507287.1| PREDICTED Oryza sativa (japonica cultivar-... 56 7e-005
dbj|AP003267.3| Oryza sativa (japonica cultivar-group) geno... 56 7e-005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 56 7e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 54 3e-004
dbj|AP003711.3| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
gb|AQ327338.1|AQ327338 nbxb0040D24r CUGI Rice BAC Library O... 52 0.001
gb|C97610.1|C97610 C97610 Rice callus Oryza sativa (japonic... 52 0.001
gb|CB641718.1|CB641718 OSJNEb01I06.r OSJNEb Oryza sativa (j... 52 0.001
gb|CB643546.1|CB643546 OSJNEb04E15.r OSJNEb Oryza sativa (j... 52 0.001
gb|CB644071.1|CB644071 OSJNEb05B21.r OSJNEb Oryza sativa (j... 52 0.001
gb|CB648724.1|CB648724 OSJNEb12E01.r OSJNEb Oryza sativa (j... 52 0.001
gb|CB685613.1|CB685613 OSJNEf16C21.r OSJNEf Oryza sativa (j... 52 0.001
dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
dbj|AK111616.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP005419.3| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|AACV01011951.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
gb|AACV01020091.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
ref|XM_475110.1| Oryza sativa (japonica cultivar-group), p... 52 0.001
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 52 0.001
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 ... 50 0.004
dbj|AP004769.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AC135568.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AACV01003074.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|AACV01003180.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|AACV01007490.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|AACV01023270.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
ref|NM_184654.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
ref|NM_189330.1| Oryza sativa (japonica cultivar-group), p... 50 0.004
ref|XM_469015.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 50 0.004
ref|NT_107184.1| Oryza sativa (japonica cultivar-group) 50 0.004
ref|NT_107185.1| Oryza sativa (japonica cultivar-group) 50 0.004
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 50 0.004
dbj|AP004326.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AC145381.4| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AQ328148.1|AQ328148 nbxb0042D19f CUGI Rice BAC Library O... 48 0.017
gb|AACV01014651.1| Oryza sativa (japonica cultivar-group) c... 48 0.017
gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (... 46 0.068
gb|AU163117.1|AU163117 AU163117 Rice green shoot Oryza sati... 46 0.068
gb|CB658258.1|CB658258 OSJNEc14C17.r OSJNEc Oryza sativa (j... 46 0.068
dbj|AK100972.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AK105745.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.068
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 46 0.068
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01008369.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
gb|AACV01012893.1| Oryza sativa (japonica cultivar-group) c... 46 0.068
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 46 0.068
ref|XM_470946.1| Oryza sativa (japonica cultivar-group), p... 46 0.068
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.068
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 46 0.068
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 46 0.068
dbj|AP003446.3| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CH401182.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.068
emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromoso... 46 0.068
emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromoso... 46 0.068
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.068
gb|CB678280.1|CB678280 OSJNEe15P21.r OSJNEe Oryza sativa (j... 44 0.27
dbj|AP003870.1| Oryza sativa (japonica cultivar-group) chro... 44 0.27
dbj|AP004653.2| Oryza sativa (japonica cultivar-group) chro... 44 0.27
dbj|AK061866.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK064764.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK100062.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK120213.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L1... 44 0.27
dbj|AP005483.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP005878.2| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP005893.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
gb|AACV01000499.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01000601.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01001484.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01007023.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01017100.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01018632.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01019354.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
gb|AACV01021935.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
ref|NM_193326.1| Oryza sativa (japonica cultivar-group), p... 44 0.27
ref|NM_197337.1| Oryza sativa (japonica cultivar-group) put... 44 0.27
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 44 0.27
ref|XM_450449.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
ref|XM_482757.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 44 0.27
ref|NM_188578.1| Oryza sativa (japonica cultivar-group), p... 44 0.27
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 44 0.27
dbj|AP003434.2| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP004233.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 44 0.27
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CH401240.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.27
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0025J22
Length = 175355
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 154167 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 154217
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 158945 tgggagaggccggaggagttcatgccggagaggttc 158910
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0064I19
Length = 111644
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 2226 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 2276
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 30686 tgggagaggcccgaggagttcatgccagagaggttc 30721
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 7004 tgggagaggccggaggagttcatgccggagaggttc 6969
>gb|AACV01001813.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001813, whole
genome shotgun sequence
Length = 23254
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 6882 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 6932
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 24859964 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 24860014
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 22631992 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 22632041
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 79325 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 79384
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 79385 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 79422
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 24888424 tgggagaggcccgaggagttcatgccagagaggttc 24888459
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 24864742 tgggagaggccggaggagttcatgccggagaggttc 24864707
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 68571 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 68630
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 68631 ccacgacctcgccttcgcgtcgcggccg 68658
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 63400 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 63341
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 63340 ccgtcgccaagctccacgaggcggc 63316
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 gaggagttcatgccggagaggttcat 1356
|||||||| |||||||||||||||||
Sbjct: 22124342 gaggagtttatgccggagaggttcat 22124317
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 53727 ccgaggagttcatgccagagaggttc 53702
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 49134 ccgaggagttcatgccagagaggttc 49109
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 7206776 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 7206826
Score = 56.0 bits (28), Expect = 7e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
|||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 4249907 gacccggcggcgtgggagaggcccgaggagttcgcgccggagaggttc 4249860
Score = 44.1 bits (22), Expect = 0.27
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 1460 gcgaccatggagatcatgctcgccaacctcatgtaccatttcgactggga 1509
|||| |||||||||||| || || ||||| |||||||||| ||||||||
Sbjct: 3169048 gcgagcatggagatcatcctagcaaaccttctgtaccattttgactggga 3169097
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 23831899 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 23831949
Score = 56.0 bits (28), Expect = 7e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
|||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 20875030 gacccggcggcgtgggagaggcccgaggagttcgcgccggagaggttc 20874983
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 520 ctccttccgccatggccgcgaggaagagg 548
|||||||||||||| ||||||||||||||
Sbjct: 41609605 ctccttccgccatgtccgcgaggaagagg 41609633
Score = 46.1 bits (23), Expect = 0.068
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 1292 tgggccatcggcagagacccggcggtctgggagaagcccgaggagttcatgccggagagg 1351
||||| |||||||| ||||||||| |||||| ||| ||||||||| ||||||||||
Sbjct: 15595156 tgggcgatcggcagggacccggcgcactgggactcgccggaggagttcgcgccggagagg 15595097
Query: 1352 ttc 1354
|||
Sbjct: 15595096 ttc 15595094
Score = 44.1 bits (22), Expect = 0.27
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 1460 gcgaccatggagatcatgctcgccaacctcatgtaccatttcgactggga 1509
|||| |||||||||||| || || ||||| |||||||||| ||||||||
Sbjct: 19794171 gcgagcatggagatcatcctagcaaaccttctgtaccattttgactggga 19794220
Score = 44.1 bits (22), Expect = 0.27
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1460 gcgaccatggagatcatgctcgccaacctcatgtaccatttcgactggga 1509
|||| |||||||||||| || || ||||| |||||||||| ||||||||
Sbjct: 8611421 gcgagcatggagatcatcctagcaaaccttctgtaccattttgactggga 8611372
Score = 44.1 bits (22), Expect = 0.27
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1477 gctcgccaacctcatgtaccatttcgactgggag 1510
|||||||||||| ||||||| ||||||||||||
Sbjct: 7133311 gctcgccaacctgctgtaccacttcgactgggag 7133344
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 25098051 gacccggcggcgtgggagaggcccgaggagttcatgccagagaggttcatg 25098101
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 22870079 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 22870128
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 312899 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 312958
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 312959 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 312996
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 25126511 tgggagaggcccgaggagttcatgccagagaggttc 25126546
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 25102829 tgggagaggccggaggagttcatgccggagaggttc 25102794
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 302145 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 302204
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 302205 ccacgacctcgccttcgcgtcgcggccg 302232
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 296974 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 296915
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 296914 ccgtcgccaagctccacgaggcggc 296890
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 gaggagttcatgccggagaggttcat 1356
|||||||| |||||||||||||||||
Sbjct: 22362429 gaggagtttatgccggagaggttcat 22362404
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 287301 ccgaggagttcatgccagagaggttc 287276
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 282708 ccgaggagttcatgccagagaggttc 282683
>dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full
insert sequence
Length = 1867
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 1290 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 1337
>dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F09, full
insert sequence
Length = 1860
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 1289 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 1336
>dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D04, full
insert sequence
Length = 1862
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 1082 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 1129
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
sequence
Length = 128017
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 62187 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 62234
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0047B10
Length = 158798
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 13456 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 13409
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1596_C06
Length = 124721
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 72901 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 72854
>gb|AACV01007961.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007961, whole
genome shotgun sequence
Length = 50131
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 15118 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 15071
>gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020124, whole
genome shotgun sequence
Length = 34569
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 16585 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 16632
>ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2199
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 1894 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 1941
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 2356565 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 2356518
Score = 56.0 bits (28), Expect = 7e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1257 acatccccgccaacacgcgcgtcctcgtgaacggctgggccatcggcagagacccggcgg 1316
||||||||||| ||||| || ||||| |||| ||| |||||| | | |||||||||
Sbjct: 1999067 acatccccgccggaacgcgggtgctcgtcaacgtgtggaccatcgcccgcgacccggcgc 1999008
Query: 1317 tctgggagaagcccgaggagttcatgccggagaggttcat 1356
| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 1999007 tgtgggactcgccggaggagttcatgccggagaggttcat 1998968
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 2033320 gaggagttcatgccggagaggttcat 2033345
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 2027039 gaggagttcatgccggagaggttcat 2027064
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 320953 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 321000
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 6007840 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 6007793
Score = 56.0 bits (28), Expect = 7e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1257 acatccccgccaacacgcgcgtcctcgtgaacggctgggccatcggcagagacccggcgg 1316
||||||||||| ||||| || ||||| |||| ||| |||||| | | |||||||||
Sbjct: 5619859 acatccccgccggaacgcgggtgctcgtcaacgtgtggaccatcgcccgcgacccggcgc 5619800
Query: 1317 tctgggagaagcccgaggagttcatgccggagaggttcat 1356
| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 5619799 tgtgggactcgccggaggagttcatgccggagaggttcat 5619760
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 5663567 gaggagttcatgccggagaggttcat 5663592
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 4785569 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 4785616
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 9213472 cctgccgttcgggtcggggcggcggatctgccccgg 9213507
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 9213249 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 9213296
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 15481651 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 15481604
Score = 56.0 bits (28), Expect = 7e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1257 acatccccgccaacacgcgcgtcctcgtgaacggctgggccatcggcagagacccggcgg 1316
||||||||||| ||||| || ||||| |||| ||| |||||| | | |||||||||
Sbjct: 15093670 acatccccgccggaacgcgggtgctcgtcaacgtgtggaccatcgcccgcgacccggcgc 15093611
Query: 1317 tctgggagaagcccgaggagttcatgccggagaggttcat 1356
| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 15093610 tgtgggactcgccggaggagttcatgccggagaggttcat 15093571
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 15137378 gaggagttcatgccggagaggttcat 15137403
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1177 ggaggcgctgcggctgcacccaccgg 1202
||||||||| ||||||||||||||||
Sbjct: 4724065 ggaggcgctacggctgcacccaccgg 4724040
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 32051732 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 32051779
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 36479635 cctgccgttcgggtcggggcggcggatctgccccgg 36479670
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1173 tgaaggaggcgctgcggctgcaccc 1197
|||||||||||||||||||||||||
Sbjct: 25567773 tgaaggaggcgctgcggctgcaccc 25567749
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 36479412 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 36479459
Score = 44.1 bits (22), Expect = 0.27
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 618 aggtgctggcggcgtacaccaacgacgtggtgagccgg 655
|||||||||||||| || ||||| ||||| ||||||||
Sbjct: 19315564 aggtgctggcggcgcaccccaaccacgtgctgagccgg 19315601
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 31232069 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 31232116
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 35566963 cctgccgttcgggtcggggcggcggatctgccccgg 35566998
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1173 tgaaggaggcgctgcggctgcaccc 1197
|||||||||||||||||||||||||
Sbjct: 25025310 tgaaggaggcgctgcggctgcaccc 25025286
Score = 50.1 bits (25), Expect = 0.004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 615 gcgaggtgctggcggcgtacaccaacgacgtggtgagccgg 655
||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 18454130 gcgaggtgctggcggcgcaccccaaccacgtgctgagccgg 18454170
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 35566740 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 35566787
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1175 aaggaggcgctgcggctgcacccaccggggcccctgctgctgccgcac 1222
|||||| |||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 16664762 aaggagacgctgcggctgcacccgccggcgccgctgctgctgccgcac 16664715
Score = 56.0 bits (28), Expect = 7e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1257 acatccccgccaacacgcgcgtcctcgtgaacggctgggccatcggcagagacccggcgg 1316
||||||||||| ||||| || ||||| |||| ||| |||||| | | |||||||||
Sbjct: 16307264 acatccccgccggaacgcgggtgctcgtcaacgtgtggaccatcgcccgcgacccggcgc 16307205
Query: 1317 tctgggagaagcccgaggagttcatgccggagaggttcat 1356
| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 16307204 tgtgggactcgccggaggagttcatgccggagaggttcat 16307165
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 16341517 gaggagttcatgccggagaggttcat 16341542
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcat 1356
||||||||||||||||||||||||||
Sbjct: 16335236 gaggagttcatgccggagaggttcat 16335261
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1177 ggaggcgctgcggctgcacccaccgg 1202
||||||||| ||||||||||||||||
Sbjct: 5589833 ggaggcgctacggctgcacccaccgg 5589808
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| |||| ||| ||||||||||||||||||||
Sbjct: 31141546 gacccggcggtgtgggaggagccggagaagttcatgccggagaggttc 31141593
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 35476891 cctgccgttcgggtcggggcggcggatctgccccgg 35476926
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1173 tgaaggaggcgctgcggctgcaccc 1197
|||||||||||||||||||||||||
Sbjct: 24934035 tgaaggaggcgctgcggctgcaccc 24934011
Score = 50.1 bits (25), Expect = 0.004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 615 gcgaggtgctggcggcgtacaccaacgacgtggtgagccgg 655
||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 18460089 gcgaggtgctggcggcgcaccccaaccacgtgctgagccgg 18460129
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 35476668 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 35476715
>gb|CB654797.1|CB654797 OSJNEc07J11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07J11 5', mRNA sequence
Length = 733
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 458 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 409
>gb|CB654798.1|CB654798 OSJNEc07J11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07J11 3', mRNA sequence
Length = 752
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 477 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 428
>dbj|AK072861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141H24, full
insert sequence
Length = 1693
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 1221 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 1270
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1300_E01
Length = 103022
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 79325 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 79384
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 79385 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 79422
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 68571 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 68630
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 68631 ccacgacctcgccttcgcgtcgcggccg 68658
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 63400 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 63341
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 63340 ccgtcgccaagctccacgaggcggc 63316
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 53727 ccgaggagttcatgccagagaggttc 53702
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 49134 ccgaggagttcatgccagagaggttc 49109
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 22413 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 22472
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 22473 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 22510
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 11659 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 11718
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 11719 ccacgacctcgccttcgcgtcgcggccg 11746
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 6488 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 6429
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 6428 ccgtcgccaagctccacgaggcggc 6404
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0104B02
Length = 169588
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 43917 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 43966
>gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017103, whole
genome shotgun sequence
Length = 15027
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 8939 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 8998
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 8999 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 9036
>gb|AACV01018675.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018675, whole
genome shotgun sequence
Length = 33710
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 31280 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 31231
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1575
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 282 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 341
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 342 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 379
>ref|XM_482839.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1694
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 1222 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 1271
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 14119521 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 14119570
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 16387884 tgggagaggcccgaggagttcatgccagagaggttc 16387919
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 16358041 tgggagaggccggaggagttcatgccggagaggttc 16358006
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 gaggagttcatgccggagaggttcat 1356
|||||||| |||||||||||||||||
Sbjct: 13616516 gaggagtttatgccggagaggttcat 13616491
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 318383 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 318442
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 318443 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 318480
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 307447 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 307506
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 307507 ccacgacctcgccttcgcgtcgcggccg 307534
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 302276 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 302217
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 302216 ccgtcgccaagctccacgaggcggc 302192
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 291964 ccgaggagttcatgccagagaggttc 291939
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 287371 ccgaggagttcatgccagagaggttc 287346
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttcat 1356
|||||||||| ||||||| ||| |||||||||||||||||| |||||||
Sbjct: 21721527 gacccggcggcgtgggagaggccggaggagttcatgccggagcggttcat 21721576
Score = 60.0 bits (30), Expect = 5e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| ||||||||| |||| || ||||| |||| ||||||||||| | |||||
Sbjct: 318383 cggctccgtccccaccctggtcgtctcctcgccgcgcgcagccgaggccgtcctccgcac 318442
Query: 367 ccacgaccacatcttcgcgtcccggccgtggtccatgg 404
|||||||| | ||||||||| |||||| | |||||||
Sbjct: 318443 ccacgacctcgccttcgcgtcgcggccgcgctccatgg 318480
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 23989890 tgggagaggcccgaggagttcatgccagagaggttc 23989925
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 23960047 tgggagaggccggaggagttcatgccggagaggttc 23960012
Score = 56.0 bits (28), Expect = 7e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 307 cggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcac 366
|||| |||| |||||||| |||| || ||||| |||||||||||||||| | |||||
Sbjct: 307447 cggctccgtccccaccctcgtcgtctcctcgccgcgcgccgccgaggccgtcctccgcac 307506
Query: 367 ccacgaccacatcttcgcgtcccggccg 394
|||||||| | ||||||||| ||||||
Sbjct: 307507 ccacgacctcgccttcgcgtcgcggccg 307534
Score = 50.1 bits (25), Expect = 0.004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 498 tgctcagcaacaagaaggtctactccttccgccatggccgcgaggaagaggtgtgcctcg 557
|||||||| |||||||||| | || |||||| |||||||||||| |||||| || |||
Sbjct: 302276 tgctcagccccaagaaggtccagtcgctccgccgtggccgcgaggaggaggtgggcatcg 302217
Query: 558 tcgtggacaacctccgcgaggcggc 582
||| | ||| |||| |||||||||
Sbjct: 302216 ccgtcgccaagctccacgaggcggc 302192
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 gaggagttcatgccggagaggttcat 1356
|||||||| |||||||||||||||||
Sbjct: 21218522 gaggagtttatgccggagaggttcat 21218497
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 291964 ccgaggagttcatgccagagaggttc 291939
Score = 44.1 bits (22), Expect = 0.27
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1329 ccgaggagttcatgccggagaggttc 1354
|||||||||||||||| |||||||||
Sbjct: 287371 ccgaggagttcatgccagagaggttc 287346
>gb|CB646631.1|CB646631 OSJNEb09D12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09D12 3', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 457 tgggagaggcccgaggagttcatgccagagaggttc 422
>gb|CB647244.1|CB647244 OSJNEb10B13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10B13 3', mRNA sequence
Length = 795
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 564 cctgccgttcgggtcggggcggcggatctgccccgg 529
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 787 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 740
>gb|CB650580.1|CB650580 OSJNEb15B16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15B16 3', mRNA sequence
Length = 791
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 321 tgggagaggcccgaggagttcatgccagagaggttc 286
>gb|CB654161.1|CB654161 OSJNEc05O08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05O08 3', mRNA sequence
Length = 773
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 572 tgggagaggcccgaggagttcatgccagagaggttc 537
>gb|CB660342.1|CB660342 OSJNEd01P15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P15 3', mRNA sequence
Length = 704
Score = 56.0 bits (28), Expect = 7e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
||||||||||| |||||| | || ||| ||||||||||||||||||||
Sbjct: 558 gacccggcggtgtgggaggacccggagaagttcatgccggagaggttc 511
>gb|CB670262.1|CB670262 OSJNEe03E01.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03E01 3', mRNA sequence
Length = 638
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 287 tgggagaggcccgaggagttcatgccagagaggttc 252
>gb|AF488521.1| Oryza sativa Cyt-P450 monooxygenase (PM-I) mRNA, complete cds
Length = 1666
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| ||| ||||||||||||||||||||||||
Sbjct: 1252 tgggagaggccggaggagttcatgccggagaggttc 1287
>dbj|AK067905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124B09, full
insert sequence
Length = 1991
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 1525 tgggagaggcccgaggagttcatgccagagaggttc 1560
>dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full
insert sequence
Length = 1939
Score = 56.0 bits (28), Expect = 7e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
|||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1379 gacccggcggcgtgggagaggcccgaggagttcgcgccggagaggttc 1426
>dbj|AK099637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L23, full
insert sequence
Length = 1752
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagaggttc 1354
||||||| |||||||||||||||||| |||||||||
Sbjct: 1140 tgggagaggcccgaggagttcatgccagagaggttc 1175
>dbj|AK107584.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E07, full
insert sequence
Length = 1865
Score = 56.0 bits (28), Expect = 7e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 1257 acatccccgccaacacgcgcgtcctcgtgaacggctgggccatcggcagagacccggcgg 1316
||||||||||| ||||| || ||||| |||| ||| |||||| | | |||||||||
Sbjct: 1274 acatccccgccggaacgcgggtgctcgtcaacgtgtggaccatcgcccgcgacccggcgc 1333
Query: 1317 tctgggagaagcccgaggagttcatgccggagaggttcat 1356
| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 1334 tgtgggactcgccggaggagttcatgccggagaggttcat 1373
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
complete sequence
Length = 145290
Score = 56.0 bits (28), Expect = 7e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccggatctgccccgg 1443
||||||||||||||| ||||| ||||||||||||||
Sbjct: 9854 cctgccgttcgggtcggggcggcggatctgccccgg 9889
Score = 48.1 bits (24), Expect = 0.017
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1173 tgaaggaggcgctgcggctgcacccaccggggcccctgctgctgccgc 1220
|||||||| |||||||||||||||| |||| | | |||||| ||||||
Sbjct: 9631 tgaaggagacgctgcggctgcacccgccggcgacgctgctgatgccgc 9678
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,591,845
Number of Sequences: 438736
Number of extensions: 3591845
Number of successful extensions: 41489
Number of sequences better than 0.5: 191
Number of HSP's better than 0.5 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35257
Number of HSP's gapped (non-prelim): 6232
length of query: 1842
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1820
effective length of database: 2,790,767,724
effective search space: 5079197257680
effective search space used: 5079197257680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)