BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA... 408 e-111
ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA 408 e-111
dbj|AP005289.2| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 170 1e-039
dbj|AP005072.3| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) c... 153 3e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 153 3e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 153 3e-034
gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library O... 88 1e-014
gb|AU101525.1|AU101525 AU101525 Rice cDNA from immature lea... 88 1e-014
gb|AQ865692.1|AQ865692 nbeb0026A21r CUGI Rice BAC Library (... 64 2e-007
gb|AQ865772.1|AQ865772 nbeb0026A22r CUGI Rice BAC Library (... 64 2e-007
gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
ref|XM_473434.1| Oryza sativa (japonica cultivar-group), p... 64 2e-007
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 64 2e-007
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 64 2e-007
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|AU032185.1|AU032185 AU032185 Rice root Oryza sativa (jap... 58 1e-005
gb|AU032186.1|AU032186 AU032186 Rice root Oryza sativa (jap... 56 5e-005
dbj|AK107184.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
gb|AACV01010167.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
ref|XM_473269.1| Oryza sativa (japonica cultivar-group), p... 56 5e-005
emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromoso... 56 5e-005
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 56 5e-005
gb|D41085.1|D41085 RICS3352A Rice shoot Oryza sativa (japon... 54 2e-004
gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Or... 48 0.013
gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonic... 48 0.013
gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonic... 48 0.013
gb|AU077523.1|AU077523 AU077523 Rice callus Oryza sativa (j... 48 0.013
gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (j... 48 0.013
gb|AU094597.1|AU094597 AU094597 Rice panicle at ripening st... 48 0.013
gb|AU173230.1|AU173230 AU173230 Rice root Oryza sativa (jap... 48 0.013
gb|AU184078.1|AU184078 AU184078 Rice root Oryza sativa (jap... 48 0.013
gb|AU184180.1|AU184180 AU184180 Rice root Oryza sativa (jap... 48 0.013
gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pi... 48 0.013
gb|CV722636.1|CV722636 root--01-B24.g1 Rice root lambda pha... 48 0.013
dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 48 0.013
gb|AACV01005005.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
ref|NM_197701.1| Oryza sativa (japonica cultivar-group) bet... 48 0.013
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 48 0.013
ref|XM_466967.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 48 0.013
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|C96739.1|C96739 C96739 Rice callus Oryza sativa (japonic... 46 0.050
gb|AU101526.1|AU101526 AU101526 Rice cDNA from immature lea... 46 0.050
gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (j... 46 0.050
gb|AU166877.1|AU166877 AU166877 Rice callus (2001) Oryza sa... 46 0.050
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.050
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.050
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.050
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.050
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.050
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 46 0.050
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 46 0.050
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 46 0.050
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 46 0.050
ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.050
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.050
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.050
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.050
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.050
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.050
gb|AU165472.1|AU165472 AU165472 Rice panicle at flowering s... 44 0.20
gb|CB643960.1|CB643960 OSJNEb04P06.f OSJNEb Oryza sativa (j... 44 0.20
gb|CB643961.1|CB643961 OSJNEb04P06.r OSJNEb Oryza sativa (j... 44 0.20
gb|CB647724.1|CB647724 OSJNEb10M09.f OSJNEb Oryza sativa (j... 44 0.20
gb|CB649623.1|CB649623 OSJNEb13K20.f OSJNEb Oryza sativa (j... 44 0.20
gb|CB653199.1|CB653199 OSJNEc04A05.f OSJNEc Oryza sativa (j... 44 0.20
gb|CB653200.1|CB653200 OSJNEc04A05.r OSJNEc Oryza sativa (j... 44 0.20
gb|CB658722.1|CB658722 OSJNEc14P12.f OSJNEc Oryza sativa (j... 44 0.20
gb|CB658723.1|CB658723 OSJNEc14P12.r OSJNEc Oryza sativa (j... 44 0.20
gb|CB660964.1|CB660964 OSJNEd03D15.f OSJNEd Oryza sativa (j... 44 0.20
gb|CB660965.1|CB660965 OSJNEd03D15.r OSJNEd Oryza sativa (j... 44 0.20
gb|CB665425.1|CB665425 OSJNEd11N09.f OSJNEd Oryza sativa (j... 44 0.20
gb|CB666790.1|CB666790 OSJNEd13N08.f OSJNEd Oryza sativa (j... 44 0.20
gb|CB681408.1|CB681408 OSJNEf07J17.r OSJNEf Oryza sativa (j... 44 0.20
gb|CV721345.1|CV721345 YBH--03-M07.b1 Rice before heading y... 44 0.20
dbj|AK061453.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
dbj|AK066611.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
dbj|AK067081.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
dbj|AK068088.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
dbj|AK099870.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11... 44 0.20
gb|AC098693.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
gb|AY100693.1| Oryza sativa (japonica cultivar-group) expan... 44 0.20
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 44 0.20
dbj|AP005513.3| Oryza sativa (japonica cultivar-group) geno... 44 0.20
gb|AACV01005815.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
gb|AACV01022027.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
ref|NM_197592.1| Oryza sativa (japonica cultivar-group) put... 44 0.20
ref|XM_470185.1| Oryza sativa (japonica cultivar-group), p... 44 0.20
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 44 0.20
gb|AC140005.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.20
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
>dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B01, full
insert sequence
Length = 1378
Score = 408 bits (206), Expect = e-111
Identities = 448/528 (84%), Gaps = 3/528 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 827 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 771
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 770 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 711
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
|| ||||| || ||| ||||||||||||| |||||| |||||||||| |||||||| |||
Sbjct: 710 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcacccttctg 651
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||| | ||| | ||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 650 tactggacctggaggataccggcggcgcggagcttgtcggccatgccgggcttggccatg 591
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgcca 781
|||||||||| |||||||||||||| |||||| || | || || || | | || ||
Sbjct: 590 gcgcccatggaagtgccgctcatgtcgaagtgcgcggcgccggcgaggcagatgcccccg 531
Query: 782 ggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgtg 841
||| ||| ||||||||| |||| ||| | |||||||||||||| || ||||||||||||
Sbjct: 530 gggcactcgtcggtgatgacgacggtggctggctggccggagcaagctgcgttggtcgtg 471
Query: 842 catttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccg 901
||||| ||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||
Sbjct: 470 catttaacctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccg 411
Query: 902 gcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccg 961
|||||||||||||| ||| ||| || |||||||| |||||||||||||| ||||||
Sbjct: 410 gcggcgatcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccg 351
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 303
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 978 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 919
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 918 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 879
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 196 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 154
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 1121 ccgcctctcgcaacacccggacgcaca 1095
>ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1378
Score = 408 bits (206), Expect = e-111
Identities = 448/528 (84%), Gaps = 3/528 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 827 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 771
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 770 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 711
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
|| ||||| || ||| ||||||||||||| |||||| |||||||||| |||||||| |||
Sbjct: 710 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcacccttctg 651
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||| | ||| | ||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 650 tactggacctggaggataccggcggcgcggagcttgtcggccatgccgggcttggccatg 591
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgcca 781
|||||||||| |||||||||||||| |||||| || | || || || | | || ||
Sbjct: 590 gcgcccatggaagtgccgctcatgtcgaagtgcgcggcgccggcgaggcagatgcccccg 531
Query: 782 ggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgtg 841
||| ||| ||||||||| |||| ||| | |||||||||||||| || ||||||||||||
Sbjct: 530 gggcactcgtcggtgatgacgacggtggctggctggccggagcaagctgcgttggtcgtg 471
Query: 842 catttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccg 901
||||| ||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||
Sbjct: 470 catttaacctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccg 411
Query: 902 gcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccg 961
|||||||||||||| ||| ||| || |||||||| |||||||||||||| ||||||
Sbjct: 410 gcggcgatcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccg 351
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 303
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 978 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 919
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 918 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 879
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 196 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 154
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 1121 ccgcctctcgcaacacccggacgcaca 1095
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_F09
Length = 139371
Score = 170 bits (86), Expect = 1e-039
Identities = 154/176 (87%), Gaps = 3/176 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 102685 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 102629
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 102628 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 102569
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccct 657
|| ||||| || ||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 102568 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcaccct 102513
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 102381 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 102322
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 102321 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 102262
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 102261 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 102216
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 102836 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 102777
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 102776 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 102737
Score = 87.7 bits (44), Expect = 1e-014
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 102058 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 101999
Query: 908 atcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 101998 atcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccgcc 101943
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 101840 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 101793
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 101686 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 101644
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 102979 ccgcctctcgcaacacccggacgcaca 102953
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 92600 gccgggctgccacccggcggggatgacgttgctggcgacgagc 92558
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 170 bits (86), Expect = 1e-039
Identities = 154/176 (87%), Gaps = 3/176 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 1833523 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 1833467
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 1833466 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 1833407
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccct 657
|| ||||| || ||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 1833406 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcaccct 1833351
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 1833219 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 1833160
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 1833159 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 1833100
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 1833099 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 1833054
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 1833674 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 1833615
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 1833614 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 1833575
Score = 87.7 bits (44), Expect = 1e-014
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 1832896 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 1832837
Query: 908 atcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 1832836 atcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccgcc 1832781
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 1832678 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 1832631
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 1832524 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 1832482
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 1833817 ccgcctctcgcaacacccggacgcaca 1833791
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 1823438 gccgggctgccacccggcggggatgacgttgctggcgacgagc 1823396
Score = 44.1 bits (22), Expect = 0.20
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 847 cacctcgtagcaggcgccgcagccctcgcc 876
||||| ||||||||||||||| ||||||||
Sbjct: 837604 caccttgtagcaggcgccgcacccctcgcc 837575
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0708H12
Length = 162381
Score = 170 bits (86), Expect = 1e-039
Identities = 154/176 (87%), Gaps = 3/176 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 30554 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 30498
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 30497 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 30438
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccct 657
|| ||||| || ||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 30437 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcaccct 30382
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 30250 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 30191
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 30190 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 30131
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 30130 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 30085
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 30705 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 30646
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 30645 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 30606
Score = 87.7 bits (44), Expect = 1e-014
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 29927 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 29868
Query: 908 atcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 29867 atcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccgcc 29812
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 29709 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 29662
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 29555 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 29513
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 30848 ccgcctctcgcaacacccggacgcaca 30822
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 20469 gccgggctgccacccggcggggatgacgttgctggcgacgagc 20427
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 170 bits (86), Expect = 1e-039
Identities = 154/176 (87%), Gaps = 3/176 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 26668524 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcgacg 26668468
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26668467 gcgttgaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 26668408
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccct 657
|| ||||| || ||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 26668407 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgcatggcaccct 26668352
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 26668220 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 26668161
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 26668160 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 26668101
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 26668100 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 26668055
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 26668675 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 26668616
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 26668615 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 26668576
Score = 87.7 bits (44), Expect = 1e-014
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 26667897 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 26667838
Query: 908 atcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 26667837 atcatcgacgagaacggccgctgcccgacggcggtctggtagccgcaagcgccgcc 26667782
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 26667679 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 26667632
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 26667525 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 26667483
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 26668818 ccgcctctcgcaacacccggacgcaca 26668792
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 26658439 gccgggctgccacccggcggggatgacgttgctggcgacgagc 26658397
Score = 44.1 bits (22), Expect = 0.20
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 847 cacctcgtagcaggcgccgcagccctcgcc 876
||||| ||||||||||||||| ||||||||
Sbjct: 25672605 caccttgtagcaggcgccgcacccctcgcc 25672576
>gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005076, whole
genome shotgun sequence
Length = 21571
Score = 153 bits (77), Expect = 3e-034
Identities = 145/167 (86%), Gaps = 3/167 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 12384 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcaacg 12328
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| | |||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 12327 gcgttaaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 12268
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgca 648
|| ||||| || ||| ||||||||||||| |||||| ||||||||||
Sbjct: 12267 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgca 12221
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 12079 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 12020
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 12019 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 11960
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 11959 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 11914
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 12535 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 12476
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 12475 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 12436
Score = 73.8 bits (37), Expect = 2e-010
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 11756 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 11697
Query: 908 atcatcgagtcgaa-tggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 11696 atcatcgacgagaacgggccgctgcccgacggcggtctggtagccgcaagcgccgcc 11640
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 11537 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 11490
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 11383 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 11341
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 12678 ccgcctctcgcaacacccggacgcaca 12652
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 2298 gccgggctgccacccggcggggatgacgttgctggcgacgagc 2256
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 153 bits (77), Expect = 3e-034
Identities = 145/167 (86%), Gaps = 3/167 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 13122744 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcaacg 13122688
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| | |||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 13122687 gcgttaaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 13122628
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgca 648
|| ||||| || ||| ||||||||||||| |||||| ||||||||||
Sbjct: 13122627 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgca 13122581
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 13122439 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 13122380
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 13122379 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 13122320
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 13122319 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 13122274
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 13122895 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 13122836
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 13122835 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 13122796
Score = 73.8 bits (37), Expect = 2e-010
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 13122116 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 13122057
Query: 908 atcatcgagtcgaa-tggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 13122056 atcatcgacgagaacgggccgctgcccgacggcggtctggtagccgcaagcgccgcc 13122000
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 13121897 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 13121850
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 13121743 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 13121701
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 847 cacctcgtagcaggcgccgcagccctcgcctcccct 882
||||| ||||||||||||||| |||||||| |||||
Sbjct: 12020215 caccttgtagcaggcgccgcaaccctcgccgcccct 12020180
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 13123038 ccgcctctcgcaacacccggacgcaca 13123012
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 13112658 gccgggctgccacccggcggggatgacgttgctggcgacgagc 13112616
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 153 bits (77), Expect = 3e-034
Identities = 145/167 (86%), Gaps = 3/167 (1%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| |||| |||||||||||| ||||| |||
Sbjct: 26575808 gcgccccagttctgcaccatcggcgtccag---ccgcagccggcctccatcaggtcaacg 26575752
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
||| | |||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26575751 gcgttaaggtcgccgtcgccgtcctcgaactcgatgagcacctcgaagtagaacgggttt 26575692
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgca 648
|| ||||| || ||| ||||||||||||| |||||| ||||||||||
Sbjct: 26575691 gccccctggtcaaccctgaacgcgatgttcacgccgctgtacttgca 26575645
Score = 115 bits (58), Expect = 6e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 26575503 gcgcggagcttgtcggccatgccgggcttggccatggcgcccatggaagtgccgctcatg 26575444
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| || | || || || | | || || ||| ||| ||||||||| |||| |
Sbjct: 26575443 tcgaagtgcgcggcgccggcgaggcagatgcccccggggcactcgtcggtgatgacgacg 26575384
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacct 851
|| | |||||||||||||| || ||||||||||||||||| ||||
Sbjct: 26575383 gtggctggctggccggagcaagctgcgttggtcgtgcatttaacct 26575338
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 26575959 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 26575900
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 26575899 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 26575860
Score = 73.8 bits (37), Expect = 2e-010
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||| ||||| |||||||| |||| ||||||| ||||||| | || |||||||||||||
Sbjct: 26575180 acctcatagcacgcgccgcaccccttgcctcccttgtacagcgacgggctcccggcggcg 26575121
Query: 908 atcatcgagtcgaa-tggcttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||||| ||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 26575120 atcatcgacgagaacgggccgctgcccgacggcggtctggtagccgcaagcgccgcc 26575064
Score = 71.9 bits (36), Expect = 9e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 26574961 ccgtcgctgccgtcgccgttgggggcgccgtagtacgtggcgccggcg 26574914
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 26574807 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 26574765
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 847 cacctcgtagcaggcgccgcagccctcgcctcccct 882
||||| ||||||||||||||| |||||||| |||||
Sbjct: 25473279 caccttgtagcaggcgccgcaaccctcgccgcccct 25473244
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 26576102 ccgcctctcgcaacacccggacgcaca 26576076
Score = 46.1 bits (23), Expect = 0.050
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 364 gccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||| |||| |||| |||||| ||||| |||||||||||
Sbjct: 26565722 gccgggctgccacccggcggggatgacgttgctggcgacgagc 26565680
>gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0022M06f, DNA sequence
Length = 595
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Plus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 298 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 357
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 358 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 397
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 155 ccgcctctcgcaacacccggacgcaca 181
>gb|AU101525.1|AU101525 AU101525 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60942, mRNA sequence
Length = 462
Score = 87.7 bits (44), Expect = 1e-014
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 110 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 51
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 50 tgcgacgagcaccttgccggagtcggaggtgaggcggagc 11
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 253 ccgcctctcgcaacacccggacgcaca 227
>gb|AQ865692.1|AQ865692 nbeb0026A21r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0026A21r, DNA sequence
Length = 468
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 368 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 419
>gb|AQ865772.1|AQ865772 nbeb0026A22r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0026A22r, DNA sequence
Length = 450
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 363 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 414
>gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010249, whole
genome shotgun sequence
Length = 24047
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 20685 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 20634
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 20246 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 20207
>ref|XM_473434.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 773 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 722
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 435 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 396
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 932 ccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgcc 978
|||||||| ||||||| |||||||||||||| ||||| ||||||||
Sbjct: 218 ccgacggcgctctggtaaccgcacgcgccgccttcgctgccgtcgcc 172
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 1406684 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 1406633
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 1406247 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 1406208
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 269076 ttcaccttgtagcaggcgccgcagccctcgcc 269045
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 1397086 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 1397043
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 5456441 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 5456390
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 5456002 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 5455963
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 4323888 ttcaccttgtagcaggcgccgcagccctcgcc 4323857
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 5434651 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 5434608
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 24600540 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 24600489
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 24600101 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 24600062
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 23467987 ttcaccttgtagcaggcgccgcagccctcgcc 23467956
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 24578750 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 24578707
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 60663 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 60612
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 60226 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 60187
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 51065 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 51022
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 383 gggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||| |||||||||||||||||||| ||| |||| | |||||||||||||
Sbjct: 27630034 gggatgacgttgttggcgacgagcaccttgccggagcccgaggtgagccgga 27629983
Score = 56.0 bits (28), Expect = 5e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtgc 754
|||||||||||| | |||||||||||||||||| ||||||
Sbjct: 27629597 ggccatggcgccgaaggcggtgccgctcatgtcgaagtgc 27629558
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 26492492 ttcaccttgtagcaggcgccgcagccctcgcc 26492461
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 27620436 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 27620393
>gb|AU032185.1|AU032185 AU032185 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3667_1A, mRNA sequence
Length = 459
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 73 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 14
Query: 397 ggcgacgagcacc 409
||||||||||||
Sbjct: 13 tgcgacgagcacc 1
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 216 ccgcctctcgcaacacccggacgcaca 190
>gb|AU032186.1|AU032186 AU032186 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3667_8Z, mRNA sequence
Length = 509
Score = 56.0 bits (28), Expect = 5e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 72 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 13
Query: 397 ggcgacgagcac 408
|||||||||||
Sbjct: 12 tgcgacgagcac 1
Score = 46.1 bits (23), Expect = 0.050
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 271 ccgccactcgcaacacccggacgcaca 297
||||| |||||||||||||||||||||
Sbjct: 215 ccgcctctcgcaacacccggacgcaca 189
>dbj|AK107184.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H07, full
insert sequence
Length = 1414
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 297 ttcaccttgtagcaggcgccgcagccctcgcc 266
>gb|AACV01010167.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010167, whole
genome shotgun sequence
Length = 31321
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 26353 ttcaccttgtagcaggcgccgcagccctcgcc 26322
>ref|XM_473269.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 837
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 314 ttcaccttgtagcaggcgccgcagccctcgcc 283
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
complete sequence
Length = 171551
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 133132 ttcaccttgtagcaggcgccgcagccctcgcc 133101
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 845 ttcacctcgtagcaggcgccgcagccctcgcc 876
||||||| ||||||||||||||||||||||||
Sbjct: 29379 ttcaccttgtagcaggcgccgcagccctcgcc 29348
>gb|D41085.1|D41085 RICS3352A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 280
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1173 tgagctttcgggtgcaagcaatggggctcactaggagtgagag 1215
||||||| |||| |||||||||||||||||| || ||||||||
Sbjct: 178 tgagcttgcgggagcaagcaatggggctcacaagaagtgagag 136
>gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11993_1A, mRNA sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 187 ggccgggatgacgttgttggcgacgagc 160
>gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50438_8Z, mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 256 ggccgggatgacgttgttggcgacgagc 229
>gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0755_10Z, mRNA sequence
Length = 748
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 371 ggccgggatgacgttgttggcgacgagc 344
>gb|AU077523.1|AU077523 AU077523 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52443_12Z, mRNA sequence
Length = 413
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 179 ggccgggatgacgttgttggcgacgagc 152
>gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51295, mRNA sequence
Length = 634
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 261 ggccgggatgacgttgttggcgacgagc 234
>gb|AU094597.1|AU094597 AU094597 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11993, mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 186 ggccgggatgacgttgttggcgacgagc 159
>gb|AU173230.1|AU173230 AU173230 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1787, mRNA sequence
Length = 463
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 88 ggccgggatgacgttgttggcgacgagc 61
>gb|AU184078.1|AU184078 AU184078 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0912, mRNA sequence
Length = 444
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 63 ggccgggatgacgttgttggcgacgagc 36
>gb|AU184180.1|AU184180 AU184180 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1486, mRNA sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 75 ggccgggatgacgttgttggcgacgagc 48
>gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0953, mRNA sequence
Length = 572
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 244 ggccgggatgacgttgttggcgacgagc 217
>gb|CV722636.1|CV722636 root--01-B24.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--01-B24, mRNA sequence
Length = 398
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 224 ggccgggatgacgttgttggcgacgagc 197
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full
insert sequence
Length = 1293
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 932 ggccgggatgacgttgttggcgacgagc 905
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full
insert sequence
Length = 1794
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 932 ggccgggatgacgttgttggcgacgagc 905
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full
insert sequence
Length = 1475
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 1114 ggccgggatgacgttgttggcgacgagc 1087
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full
insert sequence
Length = 1883
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 1510 ggccgggatgacgttgttggcgacgagc 1483
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full
insert sequence
Length = 1266
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 926 ggccgggatgacgttgttggcgacgagc 899
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full
insert sequence
Length = 1290
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 933 ggccgggatgacgttgttggcgacgagc 906
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete
sequence
Length = 147117
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 16722 ggccgggatgacgttgttggcgacgagc 16695
>gb|AACV01005005.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005005,
whole genome shotgun sequence
Length = 28414
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 847 cacctcgtagcaggcgccgcagccctcgcctcccct 882
||||| ||||||||||||||| |||||||| |||||
Sbjct: 937 caccttgtagcaggcgccgcaaccctcgccgcccct 972
>gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010248, whole
genome shotgun sequence
Length = 37264
Score = 48.1 bits (24), Expect = 0.013
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 363 tgccgggcttccacgcggccgggatggcgttgttggcgacgagc 406
|||||||||||||| ||| |||||| ||||| |||||||||||
Sbjct: 1056 tgccgggcttccacccggaagggatgacgttgctggcgacgagc 1099
>gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022092, whole
genome shotgun sequence
Length = 10831
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 7723 ggccgggatgacgttgttggcgacgagc 7696
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4
(OSJNBa0010C11.2), mRNA
Length = 1340
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| |||||||||||||||||
Sbjct: 920 ggccgggatgacgttgttggcgacgagc 893
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,209,460
Number of Sequences: 438736
Number of extensions: 2209460
Number of successful extensions: 22991
Number of sequences better than 0.5: 113
Number of HSP's better than 0.5 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21864
Number of HSP's gapped (non-prelim): 1112
length of query: 1356
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1335
effective length of database: 2,791,206,460
effective search space: 3726260624100
effective search space used: 3726260624100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)