BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 232 2e-058
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 232 2e-058
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (j... 224 4e-056
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 224 4e-056
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 218 3e-054
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 218 3e-054
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 188 2e-045
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 188 2e-045
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 188 2e-045
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 188 2e-045
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 188 2e-045
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 188 2e-045
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 188 2e-045
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 90 2e-015
gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) c... 90 2e-015
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 70 2e-009
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 70 2e-009
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 68 6e-009
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 44 0.088
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 155413 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 155354
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 155353 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 155294
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 155293 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 155234
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 155233 aagaaagaccgatcaacccggaacaaggagtag 155201
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 155598 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 155552
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 155413 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 155354
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 155353 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 155294
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 155293 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 155234
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 155233 aagaaagaccgatcaacccggaacaaggagtag 155201
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 155598 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 155552
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 16615 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 16556
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16555 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 16496
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 16495 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 16436
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 16435 aagaaagaccgatcaacccggaacaaggagtag 16403
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 16800 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 16754
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Plus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 5104 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 5163
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 5164 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 5223
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 5224 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 5283
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 5284 aagaaagaccgatcaacccggaacaaggagtag 5316
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 4919 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 4965
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 11850071 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 11850012
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 11850011 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 11849952
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 11849951 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 11849892
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 11849891 aagaaagaccgatcaacccggaacaaggagtag 11849859
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 11850256 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 11850210
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 29548808 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 29548749
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 29548748 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 29548689
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 29548688 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 29548629
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 29548628 aagaaagaccgatcaacccggaacaaggagtag 29548596
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 3910692 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 3910633
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 3910632 ggcctccagatctcccg 3910616
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 29548993 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 29548947
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 232 bits (117), Expect = 2e-058
Identities = 189/213 (88%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 30518052 gggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcctg 30517993
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
| ||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 30517992 ttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccagg 30517933
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 30517932 atgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggcac 30517873
Query: 270 aagaaagaccgagggacgcggagcaaggagtag 302
|||||||||||| || |||| ||||||||||
Sbjct: 30517872 aagaaagaccgatcaacccggaacaaggagtag 30517840
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 4078040 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 4077981
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 4077980 ggcctccagatctcccg 4077964
Score = 61.9 bits (31), Expect = 4e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 atctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 30518237 atcttcgtttgcatccttgctttcatgccaactggatggggcttgct 30518191
>gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 3', mRNA sequence
Length = 760
Score = 224 bits (113), Expect = 4e-056
Identities = 257/305 (84%)
Strand = Plus / Minus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgctcctgattgccc 60
|||||||||||||||| |||||||||||||| ||||| |||||| |||| || |||| |
Sbjct: 415 acatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgcgc 356
Query: 61 aagctatcaggcctgtgattcaaaagatcgggctgtgggggtcgatcaaggctcttgccc 120
||||||||| ||| || ||| |||||| ||||||| ||||||||||| |||||
Sbjct: 355 aagctatcaagccagtaattgtgcgcatcgggttgtggggatcgatcaaggcgcttgcga 296
Query: 121 ggggctacgagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggt 180
|||| || |||||| | |||||||| || || ||||| || || || ||||| || ||||
Sbjct: 295 ggggatatgagatcatcatggggctcctgctcttcaccccgatcgcgttcctcgcttggt 236
Query: 181 tcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtc 240
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 235 tcccgtttgtatccgagttccagaccagaatgctcttcaaccaggccttcagcagaggtc 176
Query: 241 tgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaaggagt 300
|||||||||| || ||||| || || |||||||||||||||| || |||| ||||||||
Sbjct: 175 tgcagatctcgcgaatccttggcggccacaagaaagaccgagctacacggaacaaggagt 116
Query: 301 agtag 305
|||||
Sbjct: 115 agtag 111
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 224 bits (113), Expect = 4e-056
Identities = 257/305 (84%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgctcctgattgccc 60
|||||||||||||||| |||||||||||||| ||||| |||||| |||| || |||| |
Sbjct: 636 acatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgcgc 695
Query: 61 aagctatcaggcctgtgattcaaaagatcgggctgtgggggtcgatcaaggctcttgccc 120
||||||||| ||| || ||| |||||| ||||||| ||||||||||| |||||
Sbjct: 696 aagctatcaagccagtaattgtgcgcatcgggttgtggggatcgatcaaggcgcttgcga 755
Query: 121 ggggctacgagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggt 180
|||| || |||||| | |||||||| || || ||||| || || || ||||| || ||||
Sbjct: 756 ggggatatgagatcatcatggggctcctgctcttcaccccgatcgcgttcctcgcttggt 815
Query: 181 tcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtc 240
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 816 tcccgtttgtatccgagttccagaccagaatgctcttcaaccaggccttcagcagaggtc 875
Query: 241 tgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaaggagt 300
|||||||||| || ||||| || || |||||||||||||||| || |||| ||||||||
Sbjct: 876 tgcagatctcgcgaatccttggcggccacaagaaagaccgagctacacggaacaaggagt 935
Query: 301 agtag 305
|||||
Sbjct: 936 agtag 940
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 218 bits (110), Expect = 3e-054
Identities = 254/302 (84%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgctcctgattgccc 60
|||||||||||||||| |||||||||||||| ||||| |||||| |||| || |||| |
Sbjct: 2426 acatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgcgc 2485
Query: 61 aagctatcaggcctgtgattcaaaagatcgggctgtgggggtcgatcaaggctcttgccc 120
||||||||| ||| || ||| |||||| ||||||| ||||||||||| |||||
Sbjct: 2486 aagctatcaagccagtaattgtgcgcatcgggttgtggggatcgatcaaggcgcttgcga 2545
Query: 121 ggggctacgagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggt 180
|||| || |||||| | |||||||| || || ||||| || || || ||||| || ||||
Sbjct: 2546 ggggatatgagatcatcatggggctcctgctcttcaccccgatcgcgttcctcgcttggt 2605
Query: 181 tcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtc 240
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 2606 tcccgtttgtatccgagttccagaccagaatgctcttcaaccaggccttcagcagaggtc 2665
Query: 241 tgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaaggagt 300
|||||||||| || ||||| || || |||||||||||||||| || |||| ||||||||
Sbjct: 2666 tgcagatctcgcgaatccttggcggccacaagaaagaccgagctacacggaacaaggagt 2725
Query: 301 ag 302
||
Sbjct: 2726 ag 2727
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 218 bits (110), Expect = 3e-054
Identities = 254/302 (84%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgctcctgattgccc 60
|||||||||||||||| |||||||||||||| ||||| |||||| |||| || |||| |
Sbjct: 5609 acatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgcgc 5668
Query: 61 aagctatcaggcctgtgattcaaaagatcgggctgtgggggtcgatcaaggctcttgccc 120
||||||||| ||| || ||| |||||| ||||||| ||||||||||| |||||
Sbjct: 5669 aagctatcaagccagtaattgtgcgcatcgggttgtggggatcgatcaaggcgcttgcga 5728
Query: 121 ggggctacgagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggt 180
|||| || |||||| | |||||||| || || ||||| || || || ||||| || ||||
Sbjct: 5729 ggggatatgagatcatcatggggctcctgctcttcaccccgatcgcgttcctcgcttggt 5788
Query: 181 tcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtc 240
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 5789 tcccgtttgtatccgagttccagaccagaatgctcttcaaccaggccttcagcagaggtc 5848
Query: 241 tgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaaggagt 300
|||||||||| || ||||| || || |||||||||||||||| || |||| ||||||||
Sbjct: 5849 tgcagatctcgcgaatccttggcggccacaagaaagaccgagctacacggaacaaggagt 5908
Query: 301 ag 302
||
Sbjct: 5909 ag 5910
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 93133 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 93192
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 93193 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 93252
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 93253 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 93312
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 93313 cacaagaaagaccgagctacacggaacaaggagtagtag 93351
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 92969 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 93017
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 12964 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 13023
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 13024 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 13083
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 13084 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 13143
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 13144 cacaagaaagaccgagctacacggaacaaggagtagtag 13182
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 12800 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 12848
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 7488 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 7547
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 7548 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 7607
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 7608 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 7667
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 7668 cacaagaaagaccgagctacacggaacaaggagtagtag 7706
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 7324 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 7372
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 1657691 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 1657750
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 1657751 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 1657810
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 1657811 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 1657870
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 1657871 cacaagaaagaccgagctacacggaacaaggagtagtag 1657909
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 1657527 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 1657575
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 22451597 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 22451656
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 22451657 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 22451716
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 22451717 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 22451776
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 22451777 cacaagaaagaccgagctacacggaacaaggagtagtag 22451815
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 22451433 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 22451481
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 35904661 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 35904720
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 35904721 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 35904780
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 35904781 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 35904840
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 35904841 cacaagaaagaccgagctacacggaacaaggagtagtag 35904879
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 35904497 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 35904545
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 188 bits (95), Expect = 2e-045
Identities = 188/219 (85%)
Strand = Plus / Plus
Query: 87 atcgggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggctt 146
|||||| ||||||| ||||||||||| ||||| |||| || |||||| | ||||||||
Sbjct: 35822418 atcgggttgtggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctc 35822477
Query: 147 ctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagacc 206
|| || ||||| || || || ||||| || ||||||||||| || |||||||||||||||
Sbjct: 35822478 ctgctcttcaccccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagacc 35822537
Query: 207 aggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggagga 266
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 35822538 agaatgctcttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggc 35822597
Query: 267 cacaagaaagaccgagggacgcggagcaaggagtagtag 305
|||||||||||||||| || |||| |||||||||||||
Sbjct: 35822598 cacaagaaagaccgagctacacggaacaaggagtagtag 35822636
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1 acatctttgtttgcatccttgccttcatgcccactggatggggtttgct 49
|||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct: 35822254 acatctttgtttgcattcttgccttcatgccaactggctggggtctgct 35822302
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 38830 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 38771
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 38770 ggcctccagatctcccg 38754
>gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013161, whole
genome shotgun sequence
Length = 8989
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 1351 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 1410
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 1411 ggcctccagatctcccg 1427
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 11299 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 11240
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 11239 ggcctccagatctcccg 11223
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 121693 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 121634
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 121633 ggcctccagatctcccg 121617
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||| ||
Sbjct: 3910692 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 3910633
Query: 237 ggtctgcagatctcccg 253
|| || |||||||||||
Sbjct: 3910632 ggcctccagatctcccg 3910616
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 6808 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 6749
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 6748 gggctgcagatctcc 6734
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 19378560 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 19378501
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 19378500 gggctgcagatctcc 19378486
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 19333515 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19333456
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 19333455 ggcctccagatctc 19333442
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 5515 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 5574
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 5575 gggctgcagatctcc 5589
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 2296792 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 2296733
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 2296732 gggctgcagatctcc 2296718
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 2251747 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 2251688
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 2251687 ggcctccagatctc 2251674
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 119464 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 119405
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 119404 gggctgcagatctcc 119390
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 74419 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 74360
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 74359 ggcctccagatctc 74346
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 27848 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 27789
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 27788 gggctgcagatctcc 27774
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 2430223 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 2430164
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 2430163 gggctgcagatctcc 2430149
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 2384633 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 2384574
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 2384573 ggcctccagatctc 2384560
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 19055346 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 19055287
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 19055286 gggctgcagatctcc 19055272
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 19009756 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19009697
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 19009696 ggcctccagatctc 19009683
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||| |
Sbjct: 19299843 tggttccccttcgtctccgagtttcagactcggctgctcttcaaccaggccttcagccgg 19299784
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 19299783 gggctgcagatctcc 19299769
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 19254798 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19254739
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 19254738 ggcctccagatctc 19254725
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 7833 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 7774
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 7773 ggcctccagatctc 7760
>ref|NM_193203.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1809
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
Sbjct: 1535 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 1594
Query: 237 ggtctgcagatctc 250
|| || ||||||||
Sbjct: 1595 ggcctccagatctc 1608
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||| ||||| || |||| |||| ||||||||||||| |
Sbjct: 1583 tggttccccttcgtctccgagtttcagactcggctgctcttcagccaggccttcagccgg 1642
Query: 237 ggtctgcagatctcc 251
|| ||||||||||||
Sbjct: 1643 gggctgcagatctcc 1657
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 44.1 bits (22), Expect = 0.088
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| || || || ||||||||||| || |||| ||||| |||||||||||| ||
Sbjct: 454552 tggttcccatttgtctcggagttccagacgagattgctattcaatcaggccttcagccga 454611
Query: 237 gg 238
||
Sbjct: 454612 gg 454613
Score = 44.1 bits (22), Expect = 0.088
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| || || || ||||||||||| || |||| ||||| |||||||||||| ||
Sbjct: 373465 tggttcccatttgtctcggagttccagacgagattgctattcaatcaggccttcagccga 373524
Query: 237 gg 238
||
Sbjct: 373525 gg 373526
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 666,257
Number of Sequences: 438736
Number of extensions: 666257
Number of successful extensions: 12767
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12450
Number of HSP's gapped (non-prelim): 317
length of query: 620
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 599
effective length of database: 2,791,206,460
effective search space: 1671932669540
effective search space used: 1671932669540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)