BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (ja... 196 1e-047
gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (j... 196 1e-047
gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (j... 194 5e-047
gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda ph... 194 5e-047
dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA... 194 5e-047
gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing... 188 3e-045
gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing ... 182 2e-043
gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda ph... 176 1e-041
gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (ja... 174 4e-041
gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing... 167 1e-038
gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing ... 165 4e-038
gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare imm... 139 2e-030
dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
ref|NM_189410.1| Oryza sativa (japonica cultivar-group), p... 96 3e-017
gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Ni... 86 3e-014
gb|AC104271.2| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 86 3e-014
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 86 3e-014
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|AU162290.1|AU162290 AU162290 Rice immature leaf includin... 60 2e-006
gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid ... 44 0.11
gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid ... 42 0.42
>gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52661_1A, mRNA sequence
Length = 468
Score = 196 bits (99), Expect = 1e-047
Identities = 242/290 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 143 aagaaggaggaggaggaattcagtacggggccgctgtccgtnctgatgatgagcgtgaag 202
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 203 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 262
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 263 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 322
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 323 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 382
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 383 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 432
>gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53504, mRNA sequence
Length = 660
Score = 196 bits (99), Expect = 1e-047
Identities = 242/290 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 136 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 195
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 196 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 255
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 256 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggtn 315
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 316 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 375
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 376 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 425
>gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52661, mRNA sequence
Length = 671
Score = 194 bits (98), Expect = 5e-047
Identities = 242/290 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 148 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 207
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 208 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 267
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 268 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 327
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 328 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 387
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 388 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 437
>gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 500
Score = 194 bits (98), Expect = 5e-047
Identities = 242/290 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 145 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 204
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 205 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 264
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 265 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 324
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 325 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 384
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 385 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 434
>dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full
insert sequence
Length = 694
Score = 194 bits (98), Expect = 5e-047
Identities = 242/290 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 144 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 203
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 204 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 263
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 264 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 323
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 324 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 383
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 384 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 433
>gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 529
Score = 188 bits (95), Expect = 3e-045
Identities = 243/291 (83%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 144 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 203
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 204 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 263
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 264 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 323
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 324 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 383
Query: 442 aagatgttcct-caggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | ||| || ||||||||||| ||||| |||||||||||
Sbjct: 384 aagatgttcctacgtgggggattcggtcatcattgtgctcaggaacccgaa 434
>gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 530
Score = 182 bits (92), Expect = 2e-043
Identities = 242/291 (83%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 146 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 205
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||| ||||||| ||||||| ||||| |
Sbjct: 206 aacaacacccaggtgcttatcaattgccggaacagcaagaagttgcttggtcgtgtgagg 265
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 266 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 325
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 326 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 385
Query: 442 aagatgttcct-caggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | ||| || ||||||||||| ||||| |||||||||||
Sbjct: 386 aagatgttcctacgtgggngattcggtcatcattgtgctcaggaacccgaa 436
>gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 488
Score = 176 bits (89), Expect = 1e-041
Identities = 206/245 (84%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||||||||||||||| || ||||||||||| |||||||||||| ||
Sbjct: 480 atgatgagcgtgaagaacaacacccaggtgcttatcaattgccggaacaacaagaagttg 421
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
||||| ||||| | || ||||||||||| || |||||||| || ||||| || | |||
Sbjct: 420 cttggtcgtgtgagggcatttgatcgccattgcaacatggttcttgagaatgttagggag 361
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || |||||||| || ||||| ||||||||||| || |||||||||
Sbjct: 360 atgtggactgaggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaacaag 301
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
|| || ||||| || ||||||||||| | || || ||||||||||| ||||| ||||||
Sbjct: 300 gacaggttcattagcaagatgttcctacgtggggattcggtcatcattgtgctcaggaac 241
Query: 487 ccgaa 491
|||||
Sbjct: 240 ccgaa 236
>gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53504_1A, mRNA sequence
Length = 458
Score = 174 bits (88), Expect = 4e-041
Identities = 243/292 (83%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 131 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 190
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 191 aacaacacccaggtgcttatcaattgccggaacaacaagaagttgcttggtcgtgtgagg 250
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 251 gcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggta 310
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 311 ccaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagc 370
Query: 442 aagatgttcct-caggggcgactcggtcatcatag-tgctgaggaacccgaa 491
||||||||||| | ||| || ||||||||||| | |||| |||||||||||
Sbjct: 371 aagatgttcctacgtgggggattcggtcatcattgttgctcaggaacccgaa 422
>gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 550
Score = 167 bits (84), Expect = 1e-038
Identities = 240/291 (82%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 525 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 466
Query: 262 aacaacacccag-gtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
||||||||||| | || ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 465 aacaacacccanngggcttatcaattgccggaacaacaagaagttgcttggtcgtgtgag 406
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 405 ggcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggt 346
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 345 accaaagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattag 286
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 285 caagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 235
>gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 536
Score = 165 bits (83), Expect = 4e-038
Identities = 240/291 (82%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 531 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 472
Query: 262 aacaacaccc-aggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||||||| |||| || ||||||||||| |||| ||||||| ||||||| ||||| |
Sbjct: 471 aacaacaccccaggtgcttatcaattgccggaacagcaagaagttgcttggtcgtgtgag 412
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| |
Sbjct: 411 ggcatttgatcgccattgcaacatggttcttgagaatgttagggagatgtggactgaggt 352
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| |||||||| || ||||| ||||||||||| || |||||||||| || ||||| ||
Sbjct: 351 accaaagactggtaaaggcaagaagaaggctcttccattgaacaaggacaggttcattag 292
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 291 caagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 241
>gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50441_2Z, mRNA
sequence
Length = 453
Score = 139 bits (70), Expect = 2e-030
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| ||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 8 atcaattgccggaacaacaagaanttgcttggtcgtgtgagggcatttgatcgccattgc 67
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggc 399
|||||||| || ||||| || | ||||||||||| ||| | || |||||||| || |||
Sbjct: 68 aacatggttcttgagaatgttagggagatgtggactgaggtaccaaagactggtaaaggc 127
Query: 400 aaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggc 459
|| ||||||||||| || ||||||||||| || ||||| || ||||||||||| | ||
Sbjct: 128 aagaagaaggctcttccngtgaacaaggacaggttcattagcaagatgttcctacgtggg 187
Query: 460 gactcggtcatcatagtgctgaggaacccgaa 491
|| ||||||||||| ||||| |||||||||||
Sbjct: 188 gattcggtcatcattgtgctcaggaacccgaa 219
>dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B09, full
insert sequence
Length = 360
Score = 95.6 bits (48), Expect = 3e-017
Identities = 108/128 (84%)
Strand = Plus / Plus
Query: 364 gagatgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaac 423
||||||||||| ||| | || |||||||| || ||||| ||||||||||| || ||||||
Sbjct: 14 gagatgtggactgaggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaac 73
Query: 424 aaggatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgagg 483
||||| || ||||| || ||||||||||| | || || ||||||||||| ||||| |||
Sbjct: 74 aaggacaggttcattagcaagatgttcctacgtggggattcggtcatcattgtgctcagg 133
Query: 484 aacccgaa 491
||||||||
Sbjct: 134 aacccgaa 141
>ref|NM_189410.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 153
Score = 95.6 bits (48), Expect = 3e-017
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 364 gagatgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaac 423
||||||||||| ||| | || |||||||| || ||||| ||||||||||| || ||||||
Sbjct: 22 gagatgtggaccgaggtaccaaagactggtaaaggcaagaagaaggctcttccagtgaac 81
Query: 424 aaggatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgct 479
||||| || |||||||| ||||||||||| | || |||||||||||||| |||||
Sbjct: 82 aaggacaggttcatcagcaagatgttcctacgtggggactcggtcatcattgtgct 137
>gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21985_1A, mRNA sequence
Length = 432
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 73 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 132
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 133 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 179
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
complete sequence
Length = 117724
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 45382 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 45323
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 45322 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 45276
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 45573 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 45514
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 45513 aacatggttcttgagaatgttagggagatgtggac 45479
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 47263 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 47204
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 47203 aacaacacccaggt 47190
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 45856 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 45797
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 45796 atgttcctacgtggggactcggtcatcattgtgct 45762
>gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011724, whole
genome shotgun sequence
Length = 16500
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 14346 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 14287
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 14286 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 14240
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 14537 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 14478
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 14477 aacatggttcttgagaatgttagggagatgtggac 14443
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 16227 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 16168
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 16167 aacaacacccaggt 16154
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 42711994 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 42711935
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 42711934 atgttcctacgtggggactcggtcatcattgtgct 42711900
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 2340288 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 2340229
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 2340228 atgttcctacgtggggactcggtcatcattgtgct 2340194
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 1849751 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 1849692
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 1849691 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 1849645
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 1849942 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 1849883
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 1849882 aacatggttcttgagaatgttagggagatgtggac 1849848
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 1851632 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 1851573
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 1851572 aacaacacccaggt 1851559
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 152207 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 152148
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 152147 atgttcctacgtggggactcggtcatcattgtgct 152113
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 1820684 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 1820625
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 1820624 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 1820578
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 1820875 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 1820816
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 1820815 aacatggttcttgagaatgttagggagatgtggac 1820781
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 1822565 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 1822506
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 1822505 aacaacacccaggt 1822492
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 16819087 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 16819028
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 16819027 atgttcctacgtggggactcggtcatcattgtgct 16818993
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 14086084 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 14086025
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 14086024 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 14085978
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 14086275 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 14086216
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 14086215 aacatggttcttgagaatgttagggagatgtggac 14086181
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 14087965 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 14087906
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 14087905 aacaacacccaggt 14087892
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 42020808 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 42020749
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 42020748 atgttcctacgtggggactcggtcatcattgtgct 42020714
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 42631324 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaag 42631265
Query: 445 atgttcctcaggggcgactcggtcatcatagtgct 479
|||||||| | || |||||||||||||| |||||
Sbjct: 42631264 atgttcctacgtggggactcggtcatcattgtgct 42631230
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 85.7 bits (43), Expect = 3e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 385 aagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaag 444
|||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 14316596 aagactggtaaaggcaagaagaaggctcttccagtgaacaaggacaggttcattagcaag 14316537
Query: 445 atgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 14316536 atgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 14316490
Score = 69.9 bits (35), Expect = 2e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||| ||
Sbjct: 14316787 atcaattgccggaacaacaagaagttgcttggtcgtgtgagggcatttgatcgccattgc 14316728
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| || ||||| || | |||||||||||
Sbjct: 14316727 aacatggttcttgagaatgttagggagatgtggac 14316693
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 14318477 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 14318418
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 14318417 aacaacacccaggt 14318404
>gb|AU162290.1|AU162290 AU162290 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50441, mRNA sequence
Length = 288
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| |||||||||||||| || || || || ||||| || || |||||||| || |||
Sbjct: 134 aagaaggaggaggaggaattcagtacggggccgctgtccgtgctgatgatgagcgtgaag 193
Query: 262 aacaacacccaggt 275
||||||||||||||
Sbjct: 194 aacaacacccaggt 207
>gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 287
Score = 44.1 bits (22), Expect = 0.11
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||||| | || || ||||||||||| ||||| |||||||||||
Sbjct: 4 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccgaa 53
>gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 288
Score = 42.1 bits (21), Expect = 0.42
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccga 490
||||||||||| | || || ||||||||||| ||||| ||||||||||
Sbjct: 285 aagatgttcctacgtggggattcggtcatcattgtgctcaggaacccga 237
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,222,615
Number of Sequences: 438736
Number of extensions: 1222615
Number of successful extensions: 7111
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6998
Number of HSP's gapped (non-prelim): 109
length of query: 739
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 718
effective length of database: 2,791,206,460
effective search space: 2004086238280
effective search space used: 2004086238280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)