BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (ja... 204 5e-050
gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (j... 204 5e-050
gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (j... 202 2e-049
gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda ph... 202 2e-049
dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA... 202 2e-049
gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing... 196 1e-047
gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing ... 190 7e-046
gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (ja... 186 1e-044
gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda ph... 186 1e-044
gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing... 174 4e-041
gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing ... 172 2e-040
gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare imm... 149 2e-033
ref|NM_189410.1| Oryza sativa (japonica cultivar-group), p... 115 3e-023
dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 94 1e-016
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Ni... 90 2e-015
gb|AC104271.2| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) c... 88 7e-015
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 88 7e-015
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 88 7e-015
gb|AU162290.1|AU162290 AU162290 Rice immature leaf includin... 64 1e-007
gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid ... 44 0.098
gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid ... 44 0.098
>gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52661_1A, mRNA sequence
Length = 468
Score = 204 bits (103), Expect = 5e-050
Identities = 243/290 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 429 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 370
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 369 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 310
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 309 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 250
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 249 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 190
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
|| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 189 atcagnacggacagcggccccgtactgaattcctcctcctccttcttccc 140
>gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53504, mRNA sequence
Length = 660
Score = 204 bits (103), Expect = 5e-050
Identities = 243/290 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 422 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 363
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 362 tccttgttcactggaagagccttcttcttgcctttaccagtctttggnacctcagtccac 303
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 302 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 243
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 242 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 183
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
|| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 182 atcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 133
>gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52661, mRNA sequence
Length = 671
Score = 202 bits (102), Expect = 2e-049
Identities = 243/290 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 434 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 375
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 374 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 315
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 314 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 255
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 254 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 195
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
|| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 194 atcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 145
>gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 500
Score = 202 bits (102), Expect = 2e-049
Identities = 243/290 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 431 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 372
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 371 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 312
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 311 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 252
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 251 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 192
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
|| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 191 atcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 142
>dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full
insert sequence
Length = 694
Score = 202 bits (102), Expect = 2e-049
Identities = 243/290 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 430 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 371
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 370 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 311
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 310 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 251
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 250 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 191
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
|| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 190 atcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 141
>gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 529
Score = 196 bits (99), Expect = 1e-047
Identities = 244/291 (83%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctg-aggaacatcttgctgatgaatct 357
|||||||| ||||| ||||||||||| || ||| | |||||||||||||| ||||| ||
Sbjct: 431 gggttcctgagcacaatgatgaccgaatcccccacgtaggaacatcttgctaatgaacct 372
Query: 358 atccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtcca 417
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| |||||
Sbjct: 371 gtccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtcca 312
Query: 418 catctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcc 477
|||||||| || ||||| || |||||||| || ||||||||||| || | || || ||
Sbjct: 311 catctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacc 252
Query: 478 aagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcat 537
||||| |||||||||||| ||||||||||| || ||||||||||||||||| || |||||
Sbjct: 251 aagcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcat 192
Query: 538 cattagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
||| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 191 catcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 141
>gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 530
Score = 190 bits (96), Expect = 7e-046
Identities = 243/291 (83%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctg-aggaacatcttgctgatgaatct 357
|||||||| ||||| ||||||||||| || ||| | |||||||||||||| ||||| ||
Sbjct: 433 gggttcctgagcacaatgatgaccgaatcncccacgtaggaacatcttgctaatgaacct 374
Query: 358 atccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtcca 417
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| |||||
Sbjct: 373 gtccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtcca 314
Query: 418 catctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcc 477
|||||||| || ||||| || |||||||| || ||||||||||| || | || || ||
Sbjct: 313 catctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacc 254
Query: 478 aagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcat 537
||||| ||||||| |||| ||||||||||| || ||||||||||||||||| || |||||
Sbjct: 253 aagcaacttcttgctgttccggcaattgataagcacctgggtgttgttcttcacgctcat 194
Query: 538 cattagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
||| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 193 catcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 143
>gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53504_1A, mRNA sequence
Length = 458
Score = 186 bits (94), Expect = 1e-044
Identities = 214/254 (84%)
Strand = Plus / Minus
Query: 335 aggaacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttg 394
|||||||||||||| ||||| || ||||||||||| || ||||||||||| ||||| ||
Sbjct: 381 aggaacatcttgctaatgaacctgtccttgttcactggaagagccttcttcttgccttta 322
Query: 395 ccagtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtgg 454
|||||||| || ||||| ||||||||||||| || ||||| || |||||||| || |||
Sbjct: 321 ccagtctttggtacctcagtccacatctccctaacattctcaagaaccatgttgcaatgg 262
Query: 455 cgatcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacc 514
|||||||| || | || || ||||||| |||||||||||| ||||||||||| || |||
Sbjct: 261 cgatcaaatgccctcacacgaccaagcaacttcttgttgttccggcaattgataagcacc 202
Query: 515 tgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctct 574
|||||||||||||| || |||||||| || || ||||| || || || || ||||||||
Sbjct: 201 tgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattcctcc 142
Query: 575 tcctctttcttccc 588
||||| ||||||||
Sbjct: 141 tcctccttcttccc 128
>gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 488
Score = 186 bits (94), Expect = 1e-044
Identities = 205/242 (84%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 239 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 298
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 299 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 358
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 359 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 418
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 419 agcaacttcttgttgttccggcaattgataagcacctgggtgttgttcttcacgctcatc 478
Query: 539 at 540
||
Sbjct: 479 at 480
>gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 550
Score = 174 bits (88), Expect = 4e-041
Identities = 241/291 (82%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 238 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 297
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 298 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 357
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 358 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 417
Query: 479 agcagcttcttgttgttgcggcaattgatgagaac-ctgggtgttgttcttaacactcat 537
|||| |||||||||||| ||||||||||| || | |||||||||||||| || |||||
Sbjct: 418 agcaacttcttgttgttccggcaattgataagcccnntgggtgttgttcttcacgctcat 477
Query: 538 cattagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
||| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 478 catcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 528
>gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 536
Score = 172 bits (87), Expect = 2e-040
Identities = 241/291 (82%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 244 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 303
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 304 tccttgttcaatggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 363
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 364 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 423
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacct-gggtgttgttcttaacactcat 537
|||| ||||||| |||| ||||||||||| || |||| ||||||||||||| || |||||
Sbjct: 424 agcaacttcttgctgttccggcaattgataagcacctggggtgttgttcttcacgctcat 483
Query: 538 cattagtactgacagagggcctgtgctaaattcctcttcctctttcttccc 588
||| || || ||||| || || || || |||||||| ||||| ||||||||
Sbjct: 484 catcagcacggacagcggccccgtactgaattcctcctcctccttcttccc 534
>gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50441_2Z, mRNA
sequence
Length = 453
Score = 149 bits (75), Expect = 2e-033
Identities = 175/209 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 216 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 157
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 156 tccttgttcacnggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 97
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || ||||| || |||||||| || ||||||||||| || | || || |||
Sbjct: 96 atctccctaacattctcaagaaccatgttgcaatggcgatcaaatgccctcacacgacca 37
Query: 479 agcagcttcttgttgttgcggcaattgat 507
|||| ||||||||||| |||||||||||
Sbjct: 36 agcaanttcttgttgttccggcaattgat 8
>ref|NM_189410.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 153
Score = 115 bits (58), Expect = 3e-023
Identities = 103/118 (87%)
Strand = Plus / Minus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 137 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 78
Query: 368 acaggcagagccttctttttgcccttgccagtcttggggacctctgtccacatctccc 425
|| || ||||||||||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct: 77 actggaagagccttcttcttgcctttaccagtctttggtacctcggtccacatctccc 20
>dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B09, full
insert sequence
Length = 360
Score = 109 bits (55), Expect = 2e-021
Identities = 109/127 (85%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 138 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 79
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 78 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctcagtccac 19
Query: 419 atctccc 425
|||||||
Sbjct: 18 atctccc 12
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 45762 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 45821
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 45822 actggaagagccttcttcttgcctttaccagtctt 45856
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 45953 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 46012
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 46013 ctcacacgacctagtaacttcttgttgttctggcaattgat 46053
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 42711900 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 42711959
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 42711960 actggaagagccttcttcttgcctttaccagtctt 42711994
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 42712091 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 42712150
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 42712151 ctcacacgacctagtaacttcttgttgttctggcaattgat 42712191
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 2340194 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 2340253
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 2340254 actggaagagccttcttcttgcctttaccagtctt 2340288
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 2340385 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 2340444
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 2340445 ctcacacgacctagtaacttcttgttgttctggcaattgat 2340485
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 152113 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 152172
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 152173 actggaagagccttcttcttgcctttaccagtctt 152207
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 152304 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 152363
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 152364 ctcacacgacctagtaacttcttgttgttctggcaattgat 152404
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 16818993 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 16819052
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 16819053 actggaagagccttcttcttgcctttaccagtctt 16819087
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 16819184 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 16819243
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 16819244 ctcacacgacctagtaacttcttgttgttctggcaattgat 16819284
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 42020714 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 42020773
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 42020774 actggaagagccttcttcttgcctttaccagtctt 42020808
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 42020905 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 42020964
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 42020965 ctcacacgacctagtaacttcttgttgttctggcaattgat 42021005
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 93.7 bits (47), Expect = 1e-016
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 308 agcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatctatccttgttc 367
||||| |||||||||||||| || | |||||||||||||||||||| || |||||||||
Sbjct: 42631230 agcacaatgatgaccgagtccccacgtaggaacatcttgctgatgaacctgtccttgttc 42631289
Query: 368 acaggcagagccttctttttgcccttgccagtctt 402
|| || ||||||||||| ||||| || ||||||||
Sbjct: 42631290 actggaagagccttcttcttgcctttaccagtctt 42631324
Score = 42.1 bits (21), Expect = 0.39
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || |||| |||||| ||
Sbjct: 42631421 acctcggtccacatctccctgacattctcaagaaccatgttgcaatggctatcaaatgcc 42631480
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || || || | |||||||||||| ||||||||||
Sbjct: 42631481 ctcacacgacctagtaacttcttgttgttctggcaattgat 42631521
>gb|AU058005.2|AU058005 AU058005 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21985_1A, mRNA sequence
Length = 432
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 176 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 117
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctc 411
||||||||||| || ||||||||||| ||||| || |||||||| || |||||
Sbjct: 116 tccttgttcactggaagagccttcttcttgcctttaccagtctttggtacctc 64
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
complete sequence
Length = 117724
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 45279 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 45338
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 45339 tccttgttcactggaagagccttcttcttgcctttaccagtctt 45382
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 45473 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 45532
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 45533 ctcacacgaccaagcaacttcttgttgttccggcaattgat 45573
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 47189 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 47248
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 47249 ctcctcctccttcttccc 47266
>gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011724, whole
genome shotgun sequence
Length = 16500
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 14243 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 14302
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 14303 tccttgttcactggaagagccttcttcttgcctttaccagtctt 14346
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 14437 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 14496
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 14497 ctcacacgaccaagcaacttcttgttgttccggcaattgat 14537
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 16153 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 16212
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 16213 ctcctcctccttcttccc 16230
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 1849648 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 1849707
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 1849708 tccttgttcactggaagagccttcttcttgcctttaccagtctt 1849751
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 1849842 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 1849901
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 1849902 ctcacacgaccaagcaacttcttgttgttccggcaattgat 1849942
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 1851558 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 1851617
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 1851618 ctcctcctccttcttccc 1851635
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 1820581 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 1820640
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 1820641 tccttgttcactggaagagccttcttcttgcctttaccagtctt 1820684
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 1820775 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 1820834
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 1820835 ctcacacgaccaagcaacttcttgttgttccggcaattgat 1820875
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 1822491 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 1822550
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 1822551 ctcctcctccttcttccc 1822568
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 14085981 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 14086040
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 14086041 tccttgttcactggaagagccttcttcttgcctttaccagtctt 14086084
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 14086175 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 14086234
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 14086235 ctcacacgaccaagcaacttcttgttgttccggcaattgat 14086275
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 14087891 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 14087950
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 14087951 ctcctcctccttcttccc 14087968
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 87.7 bits (44), Expect = 7e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| ||||| ||||||||||| || || | |||||||||||||| ||||| ||
Sbjct: 14316493 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgctaatgaacctg 14316552
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtctt 402
||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 14316553 tccttgttcactggaagagccttcttcttgcctttaccagtctt 14316596
Score = 73.8 bits (37), Expect = 1e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || ||||| || |||||||| || ||||||||||| ||
Sbjct: 14316687 acctcagtccacatctccctaacattctcaagaaccatgttgcaatggcgatcaaatgcc 14316746
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgat 507
| || || ||||||| |||||||||||| |||||||||||
Sbjct: 14316747 ctcacacgaccaagcaacttcttgttgttccggcaattgat 14316787
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 511 aacctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattc 570
|||||||||||||||||| || |||||||| || || ||||| || || || || |||||
Sbjct: 14318403 aacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccgtactgaattc 14318462
Query: 571 ctcttcctctttcttccc 588
||| ||||| ||||||||
Sbjct: 14318463 ctcctcctccttcttccc 14318480
>gb|AU162290.1|AU162290 AU162290 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50441, mRNA sequence
Length = 288
Score = 63.9 bits (32), Expect = 1e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 501 aattgatgagaacctgggtgttgttcttaacactcatcattagtactgacagagggcctg 560
||||||| | |||||||||||||||||| || |||||||| || || ||||| || || |
Sbjct: 218 aattgataacaacctgggtgttgttcttcacgctcatcatcagcacggacagcggccccg 159
Query: 561 tgctaaattcctcttcctctttcttccc 588
| || |||||||| ||||| ||||||||
Sbjct: 158 tactgaattcctcctcctccttcttccc 131
>gb|CF326860.1|CF326860 NACL--01-B20.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 287
Score = 44.1 bits (22), Expect = 0.098
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgct 348
|||||||| ||||| ||||||||||| || || | ||||||||||||||
Sbjct: 50 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgct 1
>gb|CF326861.1|CF326861 NACL--01-B20.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-B20, mRNA sequence
Length = 288
Score = 44.1 bits (22), Expect = 0.098
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgct 348
|||||||| ||||| ||||||||||| || || | ||||||||||||||
Sbjct: 239 gggttcctgagcacaatgatgaccgaatccccacgtaggaacatcttgct 288
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 913,705
Number of Sequences: 438736
Number of extensions: 913705
Number of successful extensions: 5528
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5424
Number of HSP's gapped (non-prelim): 93
length of query: 687
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 666
effective length of database: 2,791,206,460
effective search space: 1858943502360
effective search space used: 1858943502360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)