BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA997872.1|CA997872 S234B1_F03 Rice cold stress germinat... 244 3e-062
gb|CB643568.1|CB643568 OSJNEb04F08.f OSJNEb Oryza sativa (j... 244 3e-062
gb|CB650964.1|CB650964 OSJNEb15L12.f OSJNEb Oryza sativa (j... 244 3e-062
gb|CB675587.1|CB675587 OSJNEe11G19.f OSJNEe Oryza sativa (j... 244 3e-062
gb|CF323606.1|CF323606 HDN--04-E18.g1 OsHDAC1-overexpressin... 244 3e-062
dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-grou... 244 3e-062
dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA... 244 3e-062
dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA... 244 3e-062
gb|AACV01005297.1| Oryza sativa (japonica cultivar-group) c... 244 3e-062
ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 244 3e-062
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 244 3e-062
ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-... 244 3e-062
ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-... 244 3e-062
dbj|AP004098.3| Oryza sativa (japonica cultivar-group) geno... 244 3e-062
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 244 3e-062
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 244 3e-062
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 244 3e-062
dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA... 236 8e-060
gb|CB646356.1|CB646356 OSJNEb08M11.r OSJNEb Oryza sativa (j... 232 1e-058
gb|CB675588.1|CB675588 OSJNEe11G19.r OSJNEe Oryza sativa (j... 232 1e-058
gb|AU165513.1|AU165513 AU165513 Rice panicle at flowering s... 214 3e-053
gb|CB650965.1|CB650965 OSJNEb15L12.r OSJNEb Oryza sativa (j... 212 1e-052
gb|CB643533.1|CB643533 OSJNEb04E07.r OSJNEb Oryza sativa (j... 196 7e-048
gb|CB643532.1|CB643532 OSJNEb04E07.f OSJNEb Oryza sativa (j... 190 4e-046
gb|CB643569.1|CB643569 OSJNEb04F08.r OSJNEb Oryza sativa (j... 186 7e-045
gb|CB646017.1|CB646017 OSJNEb08C13.f OSJNEb Oryza sativa (j... 184 3e-044
gb|CB662208.1|CB662208 OSJNEd06A07.r OSJNEd Oryza sativa (j... 139 1e-030
gb|CB674992.1|CB674992 OSJNEe10G10.r OSJNEe Oryza sativa (j... 139 1e-030
dbj|AK061642.1| Oryza sativa (japonica cultivar-group) cDNA... 139 1e-030
dbj|AK103134.1| Oryza sativa (japonica cultivar-group) cDNA... 139 1e-030
dbj|AK103615.1| Oryza sativa (japonica cultivar-group) cDNA... 139 1e-030
gb|AC098572.2| Oryza sativa (japonica cultivar-group) chrom... 139 1e-030
gb|AACV01011667.1| Oryza sativa (japonica cultivar-group) c... 139 1e-030
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 139 1e-030
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 139 1e-030
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 139 1e-030
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 139 1e-030
gb|CB643997.1|CB643997 OSJNEb05A03.r OSJNEb Oryza sativa (j... 133 9e-029
gb|D49042.2|D49042 RICS15662A Rice green shoot Oryza sativa... 133 9e-029
gb|AU065707.1|AU065707 AU065707 Rice cDNA from immature lea... 123 9e-026
gb|D25150.1|D25150 RICR3368A Rice root Oryza sativa (japoni... 121 3e-025
gb|D15768.1|D15768 RICC1214A Rice callus Oryza sativa (japo... 115 2e-023
gb|C73690.1|C73690 C73690 Rice panicle (longer than 10cm) O... 105 2e-020
gb|AU055896.1|AU055896 AU055896 Oryza sativa mature leaf Ni... 98 5e-018
gb|CB643996.1|CB643996 OSJNEb05A03.f OSJNEb Oryza sativa (j... 72 3e-010
gb|CA998048.1|CA998048 ERDCA_G03 Rice cold stress germinati... 62 3e-007
gb|CA998066.1|CA998066 ERDCA_H02 Rice cold stress germinati... 62 3e-007
gb|AU162396.1|AU162396 AU162396 Rice root Oryza sativa (jap... 54 7e-005
gb|AU108585.1|AU108585 AU108585 Rice callus Oryza sativa (j... 52 3e-004
gb|AU063863.1|AU063863 AU063863 Rice panicle at flowering s... 48 0.004
dbj|AK108179.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
gb|CB682360.1|CB682360 OSJNEf09J13.f OSJNEf Oryza sativa (j... 42 0.26
>gb|CA997872.1|CA997872 S234B1_F03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 673
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 521 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 462
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 461 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 402
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 401 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 342
Query: 436 ggagtac 442
|||||||
Sbjct: 341 ggagtac 335
>gb|CB643568.1|CB643568 OSJNEb04F08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04F08 5', mRNA sequence
Length = 836
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 798 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 739
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 738 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 679
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 678 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 619
Query: 436 ggagtac 442
|||||||
Sbjct: 618 ggagtac 612
>gb|CB650964.1|CB650964 OSJNEb15L12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15L12 5', mRNA sequence
Length = 786
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 420 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 361
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 360 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 301
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 300 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 241
Query: 436 ggagtac 442
|||||||
Sbjct: 240 ggagtac 234
>gb|CB675587.1|CB675587 OSJNEe11G19.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11G19 5', mRNA sequence
Length = 847
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 380 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 321
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 320 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 261
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 260 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 201
Query: 436 ggagtac 442
|||||||
Sbjct: 200 ggagtac 194
>gb|CF323606.1|CF323606 HDN--04-E18.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-E18, mRNA sequence
Length = 605
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 406 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 347
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 346 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 287
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 286 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 227
Query: 436 ggagtac 442
|||||||
Sbjct: 226 ggagtac 220
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP
translocator, complete cds
Length = 1564
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 913 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 854
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 853 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 794
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 793 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 734
Query: 436 ggagtac 442
|||||||
Sbjct: 733 ggagtac 727
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
insert sequence
Length = 1618
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 966 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 907
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 906 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 847
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 846 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 787
Query: 436 ggagtac 442
|||||||
Sbjct: 786 ggagtac 780
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
insert sequence
Length = 1578
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 926 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 867
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 866 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 807
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 806 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 747
Query: 436 ggagtac 442
|||||||
Sbjct: 746 ggagtac 740
>gb|AACV01005297.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005297, whole
genome shotgun sequence
Length = 63269
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 8094 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 8153
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 8154 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 8213
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 8214 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 8273
Query: 436 ggagtac 442
|||||||
Sbjct: 8274 ggagtac 8280
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1577
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 925 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 866
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 865 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 806
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 805 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 746
Query: 436 ggagtac 442
|||||||
Sbjct: 745 ggagtac 739
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 5007878 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 5007819
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 5007818 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 5007759
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 5007758 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 5007699
Query: 436 ggagtac 442
|||||||
Sbjct: 5007698 ggagtac 5007692
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33
mRNA
Length = 1619
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 967 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 908
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 907 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 848
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 847 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 788
Query: 436 ggagtac 442
|||||||
Sbjct: 787 ggagtac 781
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33
mRNA
Length = 1578
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 926 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 867
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 866 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 807
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 806 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 747
Query: 436 ggagtac 442
|||||||
Sbjct: 746 ggagtac 740
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ2056_H01
Length = 123428
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 99224 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 99165
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 99164 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 99105
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 99104 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 99045
Query: 436 ggagtac 442
|||||||
Sbjct: 99044 ggagtac 99038
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 16320936 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 16320877
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 16320876 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 16320817
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 16320816 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 16320757
Query: 436 ggagtac 442
|||||||
Sbjct: 16320756 ggagtac 16320750
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 29774000 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 29773941
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 29773940 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 29773881
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 29773880 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 29773821
Query: 436 ggagtac 442
|||||||
Sbjct: 29773820 ggagtac 29773814
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 244 bits (123), Expect = 3e-062
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 29842879 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 29842820
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 29842819 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 29842760
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 29842759 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 29842700
Query: 436 ggagtac 442
|||||||
Sbjct: 29842699 ggagtac 29842693
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
insert sequence
Length = 1577
Score = 236 bits (119), Expect = 8e-060
Identities = 170/187 (90%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||| ||||||| |||||||||||||||||||| | |||
Sbjct: 925 gtacagaccacggtagacaatgatttcaacacatgagatgttaaatccacggtacaaccc 866
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 865 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 806
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 805 ttcacctcctcccttggcagccttcgcatcattggccaaccttgtcctagcatagtcaag 746
Query: 436 ggagtac 442
|||||||
Sbjct: 745 ggagtac 739
>gb|CB646356.1|CB646356 OSJNEb08M11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08M11 3', mRNA sequence
Length = 819
Score = 232 bits (117), Expect = 1e-058
Identities = 153/165 (92%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 652 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 711
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 712 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 771
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 772 ttcacctcctcccttggcagccttcgcatcattggccaaccttgt 816
>gb|CB675588.1|CB675588 OSJNEe11G19.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11G19 3', mRNA sequence
Length = 818
Score = 232 bits (117), Expect = 1e-058
Identities = 153/165 (92%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 653 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 712
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 713 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 772
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 773 ttcacctcctcccttggcagccttcgcatcattggccaaccttgt 817
>gb|AU165513.1|AU165513 AU165513 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2037, mRNA sequence
Length = 718
Score = 214 bits (108), Expect = 3e-053
Identities = 147/160 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 192 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 133
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 132 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 73
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaac 415
|||| |||||||||||||||||||||||||||| ||||||
Sbjct: 72 ttcaactcctcccttggcagccttcgcatcattggccaac 33
>gb|CB650965.1|CB650965 OSJNEb15L12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15L12 3', mRNA sequence
Length = 811
Score = 212 bits (107), Expect = 1e-052
Identities = 140/151 (92%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 661 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 720
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 721 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 780
Query: 376 ttcacctcctcccttggcagccttcgcatca 406
|||||||||||||||||||||||||||||||
Sbjct: 781 ttcacctcctcccttggcagccttcgcatca 811
>gb|CB643533.1|CB643533 OSJNEb04E07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04E07 3', mRNA sequence
Length = 808
Score = 196 bits (99), Expect = 7e-048
Identities = 132/143 (92%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 666 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 725
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 726 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 785
Query: 376 ttcacctcctcccttggcagcct 398
|||||||||||||||||||||||
Sbjct: 786 ttcacctcctcccttggcagcct 808
>gb|CB643532.1|CB643532 OSJNEb04E07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04E07 5', mRNA sequence
Length = 771
Score = 190 bits (96), Expect = 4e-046
Identities = 146/163 (89%)
Strand = Plus / Minus
Query: 280 tccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagacttgagtgt 339
||||||||| |||||||||||||| ||||| | ||||||||| ||||| |||| || ||
Sbjct: 771 tccaacacatgagatgttaaatccccggtacaacccagcaatgccatctgactgnagagt 712
Query: 340 cttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggcagcctt 399
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cttgcggtaaacatccacaaggccattgaactgcctttcacctcctcccttggcagcctt 652
Query: 400 cgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||||||| ||||||||||| || || ||||| |||||||||
Sbjct: 651 cgcatcattggccaaccttgtcctagcatagtcaagggagtac 609
>gb|CB643569.1|CB643569 OSJNEb04F08.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04F08 3', mRNA sequence
Length = 821
Score = 186 bits (94), Expect = 7e-045
Identities = 141/154 (91%), Gaps = 2/154 (1%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 666 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 725
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 726 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccattgaactgcct 785
Query: 376 ttcacctcctccctt-ggcagccttcgcatcatt 408
||||||||||||||| ||||| ||||||||||||
Sbjct: 786 ttcacctcctcccttgggcag-cttcgcatcatt 818
>gb|CB646017.1|CB646017 OSJNEb08C13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C13 5', mRNA sequence
Length = 882
Score = 184 bits (93), Expect = 3e-044
Identities = 139/153 (90%), Gaps = 1/153 (0%)
Strand = Plus / Minus
Query: 290 gagatgttaaatccacggtaaagcccagcaataccatcagacttgagtgtcttgcggtag 349
|||||||||| ||||||||| | ||||||||| ||||| |||||||| |||||||||||
Sbjct: 882 gagatgttaa-tccacggtacaacccagcaatgccatctgacttgagagtcttgcggtaa 824
Query: 350 acatcgacaagcccattgaactgcctttcacctcctcccttggcagccttcgcatcatta 409
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 acatccacaaggccattgaactgcctttcacctcctcccttggcagccttcgcatcattg 764
Query: 410 gccaaccttgttctcgcgtagtccagggagtac 442
||||||||||| || || ||||| |||||||||
Sbjct: 763 gccaaccttgtcctagcatagtcaagggagtac 731
>gb|CB662208.1|CB662208 OSJNEd06A07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06A07 3', mRNA sequence
Length = 745
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 570 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 629
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 630 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 689
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 690 cccaccacccttctttgcagccttggcatcattagcca 727
>gb|CB674992.1|CB674992 OSJNEe10G10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10G10 3', mRNA sequence
Length = 820
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 582 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 641
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 642 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 701
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 702 cccaccacccttctttgcagccttggcatcattagcca 739
>dbj|AK061642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B04, full
insert sequence
Length = 1568
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 926 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 867
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 866 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 807
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 806 cccaccacccttctttgcagccttggcatcattagcca 769
>dbj|AK103134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120D07, full
insert sequence
Length = 1606
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 929 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 870
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 869 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 810
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 809 cccaccacccttctttgcagccttggcatcattagcca 772
>dbj|AK103615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K22, full
insert sequence
Length = 1559
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 933 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 874
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 873 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 814
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 813 cccaccacccttctttgcagccttggcatcattagcca 776
>gb|AC098572.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OJ1234_D05, complete sequence
Length = 107476
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 22067 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 22126
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 22127 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 22186
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 22187 cccaccacccttctttgcagccttggcatcattagcca 22224
>gb|AACV01011667.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011667, whole
genome shotgun sequence
Length = 51647
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 17275 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 17334
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 17335 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 17394
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 17395 cccaccacccttctttgcagccttggcatcattagcca 17432
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 1011179 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 1011238
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 1011239 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 1011298
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 1011299 cccaccacccttctttgcagccttggcatcattagcca 1011336
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 1017427 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 1017486
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 1017487 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 1017546
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 1017547 cccaccacccttctttgcagccttggcatcattagcca 1017584
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 13282827 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 13282886
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 13282887 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 13282946
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 13282947 cccaccacccttctttgcagccttggcatcattagcca 13282984
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 139 bits (70), Expect = 1e-030
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 13478021 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 13478080
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 13478081 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 13478140
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 13478141 cccaccacccttctttgcagccttggcatcattagcca 13478178
>gb|CB643997.1|CB643997 OSJNEb05A03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05A03 3', mRNA sequence
Length = 829
Score = 133 bits (67), Expect = 9e-029
Identities = 133/155 (85%)
Strand = Plus / Plus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 675 gtacagcccacgatagacaatgataccaacacaggagatgttgaatccacggtacagacc 734
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 735 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 794
Query: 376 ttcacctcctcccttggcagccttcgcatcattag 410
|||| || ||| |||||||| ||||||||||
Sbjct: 795 cccaccacccttctttgcagccttggcatcattag 829
>gb|D49042.2|D49042 RICS15662A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 456
Score = 133 bits (67), Expect = 9e-029
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 111 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 52
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccatt 366
|||||| ||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 51 agcaatgccatctgacttgagagtcttgcggtaaacatccacaaggccatt 1
>gb|AU065707.1|AU065707 AU065707 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51095_1A, mRNA sequence
Length = 460
Score = 123 bits (62), Expect = 9e-026
Identities = 135/158 (85%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 391 gtacagcccacgatag-caatgataccaacacaggagatgttgaatccacggtacagacc 333
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 332 agcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgcct 273
Query: 376 ttcacctcctcccttggcagccttcgcatcattagcca 413
|||| || ||| |||||||| |||||||||||||
Sbjct: 272 cccaccacccttctttgcagccttggcatcattagcca 235
>gb|D25150.1|D25150 RICR3368A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3368_1A, mRNA sequence
Length = 274
Score = 121 bits (61), Expect = 3e-025
Identities = 76/81 (93%)
Strand = Plus / Minus
Query: 362 ccattgaactgcctttcacctcctcccttggcagccttcgcatcattagccaaccttgtt 421
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 ccattgaactgcctttcacctcctcccttggcagccttcgcatcattggccaaccttgtc 215
Query: 422 ctcgcgtagtccagggagtac 442
|| || ||||| |||||||||
Sbjct: 214 ctagcatagtcaagggagtac 194
>gb|D15768.1|D15768 RICC1214A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1214A, mRNA sequence
Length = 330
Score = 115 bits (58), Expect = 2e-023
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 90 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 31
Query: 316 agcaataccatcagacttgagtgtcttgcg 345
|||||| ||||| |||||||| ||||||||
Sbjct: 30 agcaatgccatctgacttgagagtcttgcg 1
>gb|C73690.1|C73690 C73690 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20158_1A, mRNA sequence
Length = 455
Score = 105 bits (53), Expect = 2e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 81 gtacagaccacggtagacaatgattccaacacatgagatgttaaatccacggtacaaccc 22
Query: 316 agcaataccatcagacttgag 336
|||||| ||||| ||||||||
Sbjct: 21 agcaatgccatctgacttgag 1
>gb|AU055896.1|AU055896 AU055896 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20134_2Z, mRNA sequence
Length = 712
Score = 97.6 bits (49), Expect = 5e-018
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 92 gtacagcccacgatngacaatgataccaacacaggagatgttgaatccacggtacagacc 33
Query: 316 agcaataccatcagac 331
||||||||||||||||
Sbjct: 32 agcaataccatcagac 17
>gb|CB643996.1|CB643996 OSJNEb05A03.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05A03 5', mRNA sequence
Length = 864
Score = 71.9 bits (36), Expect = 3e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 314 ccagcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgc 373
|||||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||
Sbjct: 858 ccagcaataccatcagacgcaagggtcttgcggtaaacatcaacaagtccattgaattgc 799
Query: 374 ctttcacctcctcccttggcagccttcgcatcattagcca 413
|| |||| || ||| |||||||| |||||||||||||
Sbjct: 798 ctcccaccacccttctttgcagccttggcatcattagcca 759
>gb|CA998048.1|CA998048 ERDCA_G03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 561
Score = 61.9 bits (31), Expect = 3e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgtta 298
|||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 49 gtacagaccacggtagacaatgattccaacacatgagatgtta 7
>gb|CA998066.1|CA998066 ERDCA_H02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 500
Score = 61.9 bits (31), Expect = 3e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgtta 298
|||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 54 gtacagaccacggtagacaatgattccaacacatgagatgtta 12
>gb|AU162396.1|AU162396 AU162396 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1041, mRNA sequence
Length = 715
Score = 54.0 bits (27), Expect = 7e-005
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattcc-aacacaggagatgttaaatccacggta 309
|||||| ||||| || |||||| |||| |||||| ||||||||||||||||||||
Sbjct: 66 gtacaggccacggtagacaatggttcccaacacatgagatgttaaatccacggta 12
>gb|AU108585.1|AU108585 AU108585 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12463, mRNA sequence
Length = 714
Score = 52.0 bits (26), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaa 299
|||||||||||| || |||||| |||||||||| | ||||||||
Sbjct: 44 gtacagaccacggtagacaatgnttccaacacatgngatgttaa 1
>gb|AU063863.1|AU063863 AU063863 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1256_1A, mRNA sequence
Length = 413
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 338 gtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggcagcc 397
||||| ||||| ||||| ||||| |||||||| ||||| |||| || ||| ||||||
Sbjct: 394 gtctttcggtaaacatcaacaagtccattgaattgcctcccaccacccttctttgcagcc 335
Query: 398 ttcgcatcattagcca 413
|| |||||||||||||
Sbjct: 334 ttggcatcattagcca 319
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 526,162
Number of Sequences: 438736
Number of extensions: 526162
Number of successful extensions: 11560
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11359
Number of HSP's gapped (non-prelim): 189
length of query: 461
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 440
effective length of database: 2,791,206,460
effective search space: 1228130842400
effective search space used: 1228130842400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)