BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_477102.1| Oryza sativa (japonica cultivar-group), mRNA 850 0.0
ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-... 850 0.0
dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA... 842 0.0
dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA... 842 0.0
gb|CB000642.1|CB000642 S345Q_H05 Rice cold stress germinati... 656 0.0
gb|CF303802.1|CF303802 ABF1--03-E03.g1 ABF3-overexpressing ... 589 e-165
gb|CA998282.1|CA998282 S345B_E07 Rice cold stress germinati... 569 e-159
gb|CF322881.1|CF322881 HDN--02-F07.g1 OsHDAC1-overexpressin... 533 e-149
gb|CB651081.1|CB651081 OSJNEb15O11.r OSJNEb Oryza sativa (j... 511 e-142
gb|CF324849.1|CF324849 JMT1--01-K06.g1 AtJMT-overexpressing... 476 e-131
gb|CA999345.1|CA999345 S234G_E07 Rice cold stress germinati... 436 e-119
gb|CF304154.1|CF304154 ABF1--04-D12.g1 ABF3-overexpressing ... 424 e-116
gb|CF323824.1|CF323824 HDN--04-N22.g1 OsHDAC1-overexpressin... 410 e-112
gb|CA999716.1|CA999716 S234I_D09 Rice cold stress germinati... 373 e-100
gb|AU096735.1|AU096735 AU096735 Rice green shoot Oryza sati... 363 2e-097
gb|D41490.1|D41490 RICS4019A Rice shoot Oryza sativa (japon... 287 7e-075
gb|D40902.1|D40902 RICS3087A Rice shoot Oryza sativa (japon... 268 7e-069
gb|AU063380.2|AU063380 AU063380 Rice callus Oryza sativa (j... 224 9e-056
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 143 3e-031
gb|AACV01015405.1| Oryza sativa (japonica cultivar-group) c... 143 3e-031
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 143 3e-031
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 143 3e-031
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 143 3e-031
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 143 3e-031
gb|AQ287533.1|AQ287533 nbxb0030O06r CUGI Rice BAC Library O... 68 1e-008
gb|AQ365660.2|AQ365660 nbxb0064A08f CUGI Rice BAC Library O... 68 1e-008
gb|AQ579392.1|AQ579392 nbxb0084G04r CUGI Rice BAC Library O... 62 8e-007
gb|AU077998.1|AU077998 AU077998 Oryza sativa Ariete seed Or... 56 5e-005
gb|AU161286.1|AU161286 AU161286 Rice callus Oryza sativa (j... 56 5e-005
gb|AU077999.1|AU077999 AU077999 Oryza sativa Ariete seed Or... 44 0.18
gb|AC122149.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|AACV01005858.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 44 0.18
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>ref|XM_477102.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1570
Score = 850 bits (429), Expect = 0.0
Identities = 807/936 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1361 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 1302
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| |||||||||||||||
Sbjct: 1301 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaaggg 1242
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 1241 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 1182
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||
Sbjct: 1181 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaaaatacacccttc 1122
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct: 1121 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaaca 1062
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 1061 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 1002
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 1001 tccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgc 942
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 941 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 882
Query: 774 acaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacacca 833
|||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||
Sbjct: 881 acaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacacca 822
Query: 834 gacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcatta 893
|| || ||||||| ||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct: 821 gattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattg 762
Query: 894 tttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaac 953
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| |
Sbjct: 761 tttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaa 702
Query: 954 gataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcaga 1013
| ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 701 gccaacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcagg 642
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctca 1073
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct: 641 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcctca 582
Query: 1074 atctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtg 1133
|| || || ||||||||||| ||||||||||| || || ||||||||| ||||||| ||
Sbjct: 581 attttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagta 522
Query: 1134 tgatcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctgga 1193
||||| |||||| |||| | || ||||| |||| |||||||||||| |||||
Sbjct: 521 tgatcaccttcagcatcagtggcagcataattaatgtgatcaataaccattgcctctgga 462
Query: 1194 tcctcatcaaaatcaaccccacactctgtcgcaatg 1229
||||||||||||||||||||||||||||| ||||||
Sbjct: 461 tcctcatcaaaatcaaccccacactctgttgcaatg 426
>ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_A05.4 mRNA
Length = 1648
Score = 850 bits (429), Expect = 0.0
Identities = 807/936 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1368 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 1309
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| |||||||||||||||
Sbjct: 1308 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaaggg 1249
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 1248 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 1189
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||
Sbjct: 1188 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaaaatacacccttc 1129
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct: 1128 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaaca 1069
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 1068 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 1009
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 1008 tccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgc 949
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 948 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 889
Query: 774 acaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacacca 833
|||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||
Sbjct: 888 acaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacacca 829
Query: 834 gacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcatta 893
|| || ||||||| ||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct: 828 gattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattg 769
Query: 894 tttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaac 953
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| |
Sbjct: 768 tttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaa 709
Query: 954 gataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcaga 1013
| ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 708 gccaacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcagg 649
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctca 1073
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct: 648 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcctca 589
Query: 1074 atctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtg 1133
|| || || ||||||||||| ||||||||||| || || ||||||||| ||||||| ||
Sbjct: 588 attttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagta 529
Query: 1134 tgatcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctgga 1193
||||| |||||| |||| | || ||||| |||| |||||||||||| |||||
Sbjct: 528 tgatcaccttcagcatcagtggcagcataattaatgtgatcaataaccattgcctctgga 469
Query: 1194 tcctcatcaaaatcaaccccacactctgtcgcaatg 1229
||||||||||||||||||||||||||||| ||||||
Sbjct: 468 tcctcatcaaaatcaaccccacactctgttgcaatg 433
>dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E02, full
insert sequence
Length = 1648
Score = 842 bits (425), Expect = 0.0
Identities = 806/936 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1368 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 1309
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| |||||||||||||||
Sbjct: 1308 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaaggg 1249
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 1248 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 1189
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||
Sbjct: 1188 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaaaatacacccttc 1129
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct: 1128 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaaca 1069
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 1068 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 1009
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 1008 tccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgc 949
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 948 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 889
Query: 774 acaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacacca 833
|||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||
Sbjct: 888 acaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacacca 829
Query: 834 gacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcatta 893
|| || ||||||| ||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct: 828 gattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattg 769
Query: 894 tttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaac 953
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| |
Sbjct: 768 tttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaa 709
Query: 954 gataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcaga 1013
| ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 708 gccaacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcagg 649
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctca 1073
||||| ||||| ||||||||| ||| |||||||| || |||||||||||||| ||||||
Sbjct: 648 accaagctgttagatggattaaccgcatgtccaataccccgaaataatacaggggcctca 589
Query: 1074 atctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtg 1133
|| || || ||||||||||| ||||||||||| || || ||||||||| ||||||| ||
Sbjct: 588 attttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagta 529
Query: 1134 tgatcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctgga 1193
||||| |||||| |||| | || ||||| |||| |||||||||||| |||||
Sbjct: 528 tgatcaccttcagcatcagtggcagcataattaatgtgatcaataaccattgcctctgga 469
Query: 1194 tcctcatcaaaatcaaccccacactctgtcgcaatg 1229
||||||||||||||||||||||||||||| ||||||
Sbjct: 468 tcctcatcaaaatcaaccccacactctgttgcaatg 433
>dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003F07, full
insert sequence
Length = 1570
Score = 842 bits (425), Expect = 0.0
Identities = 806/936 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1361 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 1302
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| |||||||||||||||
Sbjct: 1301 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaaggg 1242
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 1241 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 1182
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||
Sbjct: 1181 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaaaatacacccttc 1122
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct: 1121 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaaca 1062
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 1061 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 1002
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||| |||||| || ||||| |||||||||||||||| |||
Sbjct: 1001 tccaagtcatcattgatgcggtgcatgccaggctcatttgtctccccaaccttgttatgc 942
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 941 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 882
Query: 774 acaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacacca 833
|||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||
Sbjct: 881 acaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacacca 822
Query: 834 gacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcatta 893
|| || ||||||| ||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct: 821 gattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattg 762
Query: 894 tttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaac 953
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| |
Sbjct: 761 tttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaa 702
Query: 954 gataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcaga 1013
| ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 701 gccaacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcagg 642
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctca 1073
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct: 641 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcctca 582
Query: 1074 atctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtg 1133
|| || || ||||||||||| ||||||||||| || || ||||||||| ||||||| ||
Sbjct: 581 attttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagta 522
Query: 1134 tgatcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctgga 1193
||||| |||||| |||| | || ||||| |||| |||||||||||| |||||
Sbjct: 521 tgatcaccttcagcatcagtggcagcataattaatgtgatcaataaccattgcctctgga 462
Query: 1194 tcctcatcaaaatcaaccccacactctgtcgcaatg 1229
||||||||||||||||||||||||||||| ||||||
Sbjct: 461 tcctcatcaaaatcaaccccacactctgttgcaatg 426
>gb|CB000642.1|CB000642 S345Q_H05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 659
Score = 656 bits (331), Expect = 0.0
Identities = 577/659 (87%)
Strand = Plus / Minus
Query: 393 tactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaaccagtatat 452
||||| |||||||||||||||||||||||||||||||| | || ||| | ||||||||||
Sbjct: 659 tactcattatgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatat 600
Query: 453 cccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaactttgaag 512
|| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 599 ccaagcctctggtactcaactttgaactggaaaactccataaacatctggaactttgaag 540
Query: 513 gatgttgagtataaacccttgttgtcattcgacatagttttcagaacataaggactcatc 572
|||||||| ||| |||||| |||||| |||||| || |||||||||||||| ||||||
Sbjct: 539 gatgttgaaaatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatc 480
Query: 573 atgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttccagaccat 632
||| ||||||| | ||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 479 atgtaaaactgaacttgaacatcatcagcaacatacggcttccagctggtcccagaccat 420
Query: 633 tcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctggttcattg 692
|| |||||||||||||||||||||| |||||| || |||||||||||||| || |||||
Sbjct: 419 tcgtagatctcaacagagtattccaagtcatcattgatgcggtacatgccaggctcattt 360
Query: 693 gtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctcatggaag 752
|||||||||||||||| ||||| ||||| || ||||| || || |||||||||||||||
Sbjct: 359 gtctccccaaccttgttatgcttgacattcactgcctttagatggcccctctcatggaag 300
Query: 753 acccatttgcttgtctctgtcacaaattgctcatttccagctctctcgtatctcgttttg 812
|||||||||||||| |||||||||||||| |||||||||||| |||| | || | |||
Sbjct: 299 acccatttgcttgtttctgtcacaaattgttcatttccagctttctcatgccttatcttg 240
Query: 813 ctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatcca 872
||||| ||||| ||||||||||| || ||||||| ||||||||| ||||| |||||||||
Sbjct: 239 ctaccggccttctgaacaccagattttaggaacctgttgctaaacagatcgagtgatcca 180
Query: 873 gatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgac 932
|||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 179 gatatcaagacccgagcattgtttcttgcctgcataacagaaaccagtgatatagccgac 120
Query: 933 ccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatgga 992
|| || || |||||||| | | ||||||| ||||||||| |||||||||||||| |||
Sbjct: 119 cctgtgagagatggaggggaagccaacttagactttgggtttgctgagtatgctgacgga 60
Query: 993 gaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcc 1051
||||| |||| ||||||||| ||||| ||||| ||||||||| ||| |||||||||||
Sbjct: 59 gaggcggataagactttcaggaccaagctgttagatggattaaccgcatgtccaattcc 1
>gb|CF303802.1|CF303802 ABF1--03-E03.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-E03, mRNA sequence
Length = 681
Score = 589 bits (297), Expect = e-165
Identities = 547/628 (87%), Gaps = 2/628 (0%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 636 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 577
Query: 354 gca-gtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagg 412
||| | ||||| || || || || |||||||| || |||||||| ||||||||||||||
Sbjct: 576 gcangcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaagg 517
Query: 413 gcgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaac 472
|||||||||||||||||| | || ||| | |||||||||||| |||||||||||||||||
Sbjct: 516 gcgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaac 457
Query: 473 tttgaactggaaaactccg-tagacatcaggaactttgaaggatgttgagtataaaccct 531
|||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||
Sbjct: 456 tttgaactggaaaactccnataaacatctggaactttgaaggatgttgaaaatacaccct 397
Query: 532 tgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgca 591
| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |
Sbjct: 396 tcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaa 337
Query: 592 catcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagt 651
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 336 catcatcagcaacatacggcttccagcttgtcccagaccattcgtagatctcaacagagt 277
Query: 652 attccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggt 711
|||||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |
Sbjct: 276 attccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttat 217
Query: 712 gcttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctg 771
|||| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct: 216 gcttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctg 157
Query: 772 tcacaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacac 831
|||||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||
Sbjct: 156 tcacaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacac 97
Query: 832 cagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcat 891
|||| || ||||||| ||||||||| ||||| ||||||||||||| || ||||||||||
Sbjct: 96 cagattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcat 37
Query: 892 tatttcttgcctgcataaccgaaaccag 919
| ||||||||||||||||| ||||||||
Sbjct: 36 tgtttcttgcctgcataacagaaaccag 9
>gb|CA998282.1|CA998282 S345B_E07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 652
Score = 569 bits (287), Expect = e-159
Identities = 521/599 (86%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||||| |||
Sbjct: 637 ttcagaacataagggctcatcatgtaaaactgaacttgaacatcatcagcaacatacggc 578
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
|||||||| || ||||||||||| |||||||||||||||||||||| |||||| || |||
Sbjct: 577 ttccagctggtcccagaccattcgtagatctcaacagagtattccaagtcatcattgatg 518
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
||||||||||| || ||||| |||||||||||||||| ||||| ||||| || |||||
Sbjct: 517 cggtacatgccaggctcatttgtctccccaaccttgttatgcttgacattcactgccttt 458
Query: 732 aggtgccccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttcca 791
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 457 agatggcccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttcca 398
Query: 792 gctctctcgtatctcgttttgctaccagccttttgaacaccagacttcaggaaccggttg 851
||| |||| | || | |||||||| ||||| ||||||||||| || ||||||| ||||
Sbjct: 397 gctttctcatgccttatcttgctaccggccttctgaacaccagattttaggaacctgttg 338
Query: 852 ctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgcataacc 911
||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 337 ctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgcataaca 278
Query: 912 gaaaccagtgatatagctgacccagtaagcgatggaggcaacgataacttagtctttggg 971
||||||||||||||||| ||||| || || |||||||| | | ||||||| |||||||
Sbjct: 277 gaaaccagtgatatagccgaccctgtgagagatggaggggaagccaacttagactttggg 218
Query: 972 ttagctgagtatgctgatggagaggcagataggactttcagaaccaaactgtttgatgga 1031
|| |||||||||||||| |||||||| |||| ||||||||| ||||| ||||| ||||||
Sbjct: 217 tttgctgagtatgctgacggagaggcggataagactttcaggaccaagctgttagatgga 158
Query: 1032 ttagccgtgtgtccaattccacgaaataatacaggagcctcaatctttttagaccccagt 1091
||| ||| ||||||||||| |||||||||||||| |||||||| || || |||||||||
Sbjct: 157 ttaaccgcatgtccaattccccgaaataatacaggggcctcaattttctttgaccccagt 98
Query: 1092 atgacatctgactgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatc 1150
|| ||||||||||| || || ||||||||| ||||||| || ||||| |||||| ||||
Sbjct: 97 atcacatctgactggatgaggtcatcaccagcaatcaaagtatgatcaccttcagcatc 39
>gb|CF322881.1|CF322881 HDN--02-F07.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-F07, mRNA sequence
Length = 583
Score = 533 bits (269), Expect = e-149
Identities = 485/557 (87%)
Strand = Plus / Minus
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 583 tcatcagcaacatacggcttccagcttgtcccagaccattcgtagatctcaacagagtat 524
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 523 tccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgc 464
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 463 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 404
Query: 774 acaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacacca 833
|||||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||
Sbjct: 403 acaaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacacca 344
Query: 834 gacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcatta 893
|| || ||||||| ||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct: 343 gattttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattg 284
Query: 894 tttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaac 953
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| |
Sbjct: 283 tttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaa 224
Query: 954 gataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcaga 1013
| ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 223 gccaacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcagg 164
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctca 1073
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct: 163 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcctca 104
Query: 1074 atctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtg 1133
|| || || ||||||||||| ||||||||||| || || ||||||||| ||||||| ||
Sbjct: 103 attttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagta 44
Query: 1134 tgatcgccttcaacatc 1150
||||| |||||| ||||
Sbjct: 43 tgatcaccttcagcatc 27
>gb|CB651081.1|CB651081 OSJNEb15O11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15O11 3', mRNA sequence
Length = 821
Score = 511 bits (258), Expect = e-142
Identities = 444/506 (87%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 293 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 352
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| |||||||||||||||
Sbjct: 353 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgtaaggg 412
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 413 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 472
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||
Sbjct: 473 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaaaatacacccttc 532
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct: 533 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaacttgaaca 592
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 593 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 652
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 653 tccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgc 712
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
|| ||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 713 ttgacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtc 772
Query: 774 acaaattgctcatttccagctctctc 799
|||||||| |||||||||||| ||||
Sbjct: 773 acaaattgttcatttccagctttctc 798
>gb|CF324849.1|CF324849 JMT1--01-K06.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-K06, mRNA sequence
Length = 576
Score = 476 bits (240), Expect = e-131
Identities = 457/528 (86%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 624 ccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcct 683
||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct: 560 ccagaccattcgtagatctcaacagagtattccaagtcatcattgatgcggtacatgcca 501
Query: 684 ggttcattggtctcc-ccaaccttgtggtgcttaacattaacagccttaaggtgccccct 742
|| ||||| |||||| |||||||||| ||||| ||||| || ||||| || || |||||
Sbjct: 500 ggctcatttgtctccnccaaccttgttatgcttgacattcactgcctttagatggcccct 441
Query: 743 ctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctctcgta 802
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
Sbjct: 440 ctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttctcatg 381
Query: 803 tctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatc 862
|| | |||||||| ||||| ||||||||||| || ||||||| ||||||||| |||||
Sbjct: 380 ccttatcttgctaccggccttctgaacaccagattttaggaacctgttgctaaacagatc 321
Query: 863 aagtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtga 922
||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 320 gagtgatccagatatcaagacccgagcattgtttcttgcctgcataacagaaaccagtga 261
Query: 923 tatagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagta 982
|||||| ||||| || || |||||||| | | ||||||| ||||||||| ||||||||
Sbjct: 260 tatagccgaccctgtgagagatggaggggaagccaacttagactttgggtttgctgagta 201
Query: 983 tgctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtg 1042
|||||| |||||||| |||| ||||||||| ||||| ||||| ||||||||| ||| ||
Sbjct: 200 tgctgacggagaggcggataagactttcaggaccaagctgttagatggattaaccgcatg 141
Query: 1043 tccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgacatctga 1102
||||||||| |||||||||||||| |||||||| || || ||||||||||| ||||||||
Sbjct: 140 tccaattccccgaaataatacaggggcctcaattttctttgaccccagtatcacatctga 81
Query: 1103 ctgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatc 1150
||| || || ||||||||| ||||||| || ||||| |||||| ||||
Sbjct: 80 ctggatgaggtcatcaccagcaatcaaagtatgatcaccttcagcatc 33
>gb|CA999345.1|CA999345 S234G_E07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 456
Score = 436 bits (220), Expect = e-119
Identities = 397/456 (87%)
Strand = Plus / Minus
Query: 596 atcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattc 655
|||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 456 atcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtattc 397
Query: 656 caggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgctt 715
|| |||||| || |||||||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 396 caagtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgctt 337
Query: 716 aacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtcac 775
||||| || ||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 gacattcactgcctttagatggcccctctcatggaagacccatttgcttgtttctgtcac 277
Query: 776 aaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaacaccaga 835
|||||| |||||||||||| |||| | || | |||||||| ||||| |||||||||||
Sbjct: 276 aaattgttcatttccagctttctcatgccttatcttgctaccggccttctgaacaccaga 217
Query: 836 cttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcattatt 895
|| ||||||| ||||||||| ||||| ||||||||||||| || ||||||||||| ||
Sbjct: 216 ttttaggaacctgttgctaaacagatcgagtgatccagatatcaagacccgagcattgtt 157
Query: 896 tcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacga 955
||||||||||||||| ||||||||||||||||| ||||| || || |||||||| | |
Sbjct: 156 tcttgcctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagc 97
Query: 956 taacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcagaac 1015
||||||| ||||||||| |||||||||||||| |||||||| |||| ||||||||| ||
Sbjct: 96 caacttagactttgggtttgctgagtatgctgacggagaggcggataagactttcaggac 37
Query: 1016 caaactgtttgatggattagccgtgtgtccaattcc 1051
||| ||||| ||||||||| ||| |||||||||||
Sbjct: 36 caagctgttagatggattaaccgcatgtccaattcc 1
>gb|CF304154.1|CF304154 ABF1--04-D12.g1 ABF3-overexpressing transgenic rice lambda phage cDNA
library (ABF1) Oryza sativa (japonica cultivar-group)
cDNA clone ABF1--04-D12, mRNA sequence
Length = 577
Score = 424 bits (214), Expect = e-116
Identities = 415/485 (85%)
Strand = Plus / Minus
Query: 745 catggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctctcgtatc 804
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||| | |
Sbjct: 577 catggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttctcatgcc 518
Query: 805 tcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatcaa 864
| | |||||||| ||||| ||||||||||| || ||||||| ||||||||| ||||| |
Sbjct: 517 ttatcttgctaccggccttctgaacaccagattttaggaacctgttgctaaacagatcga 458
Query: 865 gtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgata 924
|||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 457 gtgatccagatatcaagacccgagcattgtttcttgcctgcataacagaaaccagtgata 398
Query: 925 tagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtatg 984
|||| ||||| || || |||||||| | | ||||||| ||||||||| ||||||||||
Sbjct: 397 tagccgaccctgtgagagatggaggggaagccaacttagactttgggtttgctgagtatg 338
Query: 985 ctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtc 1044
|||| |||||||| |||| ||||||||| ||||| ||||| ||||||||| ||| ||||
Sbjct: 337 ctgacggagaggcggataagactttcaggaccaagctgttagatggattaaccgcatgtc 278
Query: 1045 caattccacgaaataatacaggagcctcaatctttttagaccccagtatgacatctgact 1104
||||||| |||||||||||||| |||||||| || || ||||||||||| ||||||||||
Sbjct: 277 caattccccgaaataatacaggggcctcaattttctttgaccccagtatcacatctgact 218
Query: 1105 gaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatann 1164
| || || ||||||||| ||||||| || ||||| |||||| |||| | || |||||
Sbjct: 217 ggatgaggtcatcaccagcaatcaaagtatgatcaccttcagcatcagtggcagcataat 158
Query: 1165 nnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactctgtcg 1224
|||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 157 taatgtgatcaataaccattgcctctggatcctcatcaaaatcaaccccacactctgttg 98
Query: 1225 caatg 1229
|||||
Sbjct: 97 caatg 93
>gb|CF323824.1|CF323824 HDN--04-N22.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-N22, mRNA sequence
Length = 529
Score = 410 bits (207), Expect = e-112
Identities = 408/478 (85%)
Strand = Plus / Minus
Query: 752 gacccatttgcttgtctctgtcacaaattgctcatttccagctctctcgtatctcgtttt 811
||||||||||||||| |||||||||||||| |||||||||||| |||| | || | ||
Sbjct: 529 gacccatttgcttgtttctgtcacaaattgttcatttccagctttctcatgccttatctt 470
Query: 812 gctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatcc 871
|||||| ||||| ||||||||||| || ||||||| ||||||||| ||||| ||||||||
Sbjct: 469 gctaccggccttctgaacaccagattttaggaacctgttgctaaacagatcgagtgatcc 410
Query: 872 agatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagctga 931
||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct: 409 agatatcaagacccgagcattgtttcttgcctgcataacagaaaccagtgatatagccga 350
Query: 932 cccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatgg 991
||| || || |||||||| | | ||||||| ||||||||| |||||||||||||| ||
Sbjct: 349 ccctgtgagagatggaggggaagccaacttagactttgggtttgctgagtatgctgacgg 290
Query: 992 agaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcc 1051
|||||| |||| ||||||||| ||||| ||||| ||||||||| ||| |||||||||||
Sbjct: 289 agaggcggataagactttcaggaccaagctgttagatggattaaccgcatgtccaattcc 230
Query: 1052 acgaaataatacaggagcctcaatctttttagaccccagtatgacatctgactgaataag 1111
|||||||||||||| |||||||| || || ||||||||||| ||||||||||| || ||
Sbjct: 229 ccgaaataatacaggggcctcaattttctttgaccccagtatcacatctgactggatgag 170
Query: 1112 atcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtg 1171
||||||||| ||||||| || ||||| |||||| |||| | || ||||| ||||
Sbjct: 169 gtcatcaccagcaatcaaagtatgatcaccttcagcatcagtggcagcataattaatgtg 110
Query: 1172 gtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 109 atcaataaccattgcctctggatcctcatcaaaatcaaccccacactctgttgcaatg 52
>gb|CA999716.1|CA999716 S234I_D09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 409
Score = 373 bits (188), Expect = e-100
Identities = 353/408 (86%)
Strand = Plus / Minus
Query: 644 aacagagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaac 703
|||||||||||||| |||||| || |||||||||||||| || ||||| |||||||||||
Sbjct: 409 aacagagtattccaagtcatcattgatgcggtacatgccaggctcatttgtctccccaac 350
Query: 704 cttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgct 763
||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||||||
Sbjct: 349 cttgttatgcttgacattcactgcctttagatggcccctctcatggaagacccatttgct 290
Query: 764 tgtctctgtcacaaattgctcatttccagctctctcgtatctcgttttgctaccagcctt 823
||| |||||||||||||| |||||||||||| |||| | || | |||||||| |||||
Sbjct: 289 tgtttctgtcacaaattgttcatttccagctttctcatgccttatcttgctaccggcctt 230
Query: 824 ttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcac 883
||||||||||| || ||||||| ||||||||| ||||| ||||||||||||| || ||
Sbjct: 229 ctgaacaccagattttaggaacctgttgctaaacagatcgagtgatccagatatcaagac 170
Query: 884 ccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcga 943
||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || || ||
Sbjct: 169 ccgagcattgtttcttgcctgcataacagaaaccagtgatatagccgaccctgtgagaga 110
Query: 944 tggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggcagatag 1003
|||||| | | ||||||| ||||||||| |||||||||||||| |||||||| ||||
Sbjct: 109 tggaggggaagccaacttagactttgggtttgctgagtatgctgacggagaggcggataa 50
Query: 1004 gactttcagaaccaaactgtttgatggattagccgtgtgtccaattcc 1051
||||||||| ||||| ||||| ||||||||| ||| |||||||||||
Sbjct: 49 gactttcaggaccaagctgttagatggattaaccgcatgtccaattcc 2
>gb|AU096735.1|AU096735 AU096735 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14870, mRNA sequence
Length = 678
Score = 363 bits (183), Expect = 2e-097
Identities = 358/415 (86%), Gaps = 2/415 (0%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||||||||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 460 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaacgac 401
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| ||||| || || || || |||||||| || |||||||| ||||||||| ||||
Sbjct: 400 gcagcatagtacggatatgccgaagttatgaatctttcatactcattatgcctgnaagg- 342
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||| | || ||| | |||||||||||| ||||||||||||||||||
Sbjct: 341 cgcactggaatctgcttagaaagagagagaccagtatatccaagcctctggtactcaact 282
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
| ||||||||||||||| || ||||| ||||||||||||| |||||| ||| ||||||
Sbjct: 281 tngaactggaaaactccataaacatctggaactttgaaggntgttgaaaatacacccttc 222
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||| || |||||||||||||| ||||||||| ||||| | | ||| |||
Sbjct: 221 ttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaacngaacttgaaca 162
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 161 tcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacagagtat 102
Query: 654 tccaggtcatcgttaatgcggtacat-gcctggttcattggtctccccaaccttg 707
|||| |||||| || ||||||||||| ||| || ||||| |||||||||||||||
Sbjct: 101 tccaagtcatcattgatgcggtacatggccaggctcatttgtctccccaaccttg 47
>gb|D41490.1|D41490 RICS4019A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 350
Score = 287 bits (145), Expect = 7e-075
Identities = 300/350 (85%), Gaps = 2/350 (0%)
Strand = Plus / Minus
Query: 701 aaccttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccattt 760
|||||||| ||||| |||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 349 aaccttgttatgcttgacattaactgccttaagatggcccctctcatggaagacccattt 290
Query: 761 gcttgtctctgtcacaaa-ttgctcatttccagctctctcgtatctcgttttgctaccag 819
|||||| ||||||||||| ||| |||||||||||| |||| | || | |||||||| |
Sbjct: 289 gcttgt-tctgtcacaaaattgttcatttccagctttctcatgccttatcttgctaccgg 231
Query: 820 ccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagca 879
|||| ||||||||||| || ||||||| ||||||||| ||||| ||||| ||||||| ||
Sbjct: 230 ccttctgaacaccagattttaggaacctgttgctaaacagatcgagtganccagatatca 171
Query: 880 gcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaa 939
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct: 170 agacccgagcattgtttcttgcctgcataacagaaaccagtgatatagccgaccctgtga 111
Query: 940 gcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggcag 999
| |||||||| | | ||||||| ||||||||| |||||||||||||| |||||||| |
Sbjct: 110 gagatggaggggaagccaacttagactttgggtttgctgagtatgctgacggagaggcgg 51
Query: 1000 ataggactttcagaaccaaactgtttgatggattagccgtgtgtccaatt 1049
||| |||||||| ||||| ||||| ||||||||| ||| |||||||||
Sbjct: 50 ataagactttcannaccaagctgttagatggattaaccgcatgtccaatt 1
>gb|D40902.1|D40902 RICS3087A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 306
Score = 268 bits (135), Expect = 7e-069
Identities = 263/306 (85%)
Strand = Plus / Minus
Query: 744 tcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctctcgtat 803
|||||||||||||||||||||| | |||||||||||| |||||||||||| |||| |
Sbjct: 306 tcatggaagacccatttgcttggttatgtcacaaattgttcatttccagctttctcatgc 247
Query: 804 ctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatca 863
|| | |||||||| ||||| ||||||||||| || ||||||| ||||||||| |||||
Sbjct: 246 cttatcttgctaccggccttctgaacaccagattttaggaacctgttgctaaacagatcg 187
Query: 864 agtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgat 923
||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 186 agtgatccagatatcaagacccgagcattgtttcttgcctgcataacagaaaccagtgat 127
Query: 924 atagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtat 983
||||| ||||| || || |||||||| | | ||||||| ||||||||| |||||||||
Sbjct: 126 atagccgaccctgtgagagatggaggggaagccaacttagactttgggtttgctgagtat 67
Query: 984 gctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgt 1043
||||| |||||||| |||| ||||||||| ||||| ||||| ||||||||| ||| |||
Sbjct: 66 gctgacggagaggcggataagactttcagnaccaagctgttagatggattaaccgcatgt 7
Query: 1044 ccaatt 1049
||||||
Sbjct: 6 ccaatt 1
>gb|AU063380.2|AU063380 AU063380 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61218_1A, mRNA sequence
Length = 488
Score = 224 bits (113), Expect = 9e-056
Identities = 230/273 (84%)
Strand = Plus / Minus
Query: 957 aacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcagaacc 1016
||||||| ||||||||| |||||||||||||| || ||||| |||| ||||||||| |||
Sbjct: 409 aacttagactttgggtttgctgagtatgctgacggngaggcggataagactttcaggacc 350
Query: 1017 aaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctcaatc 1076
|| |||| ||||||||| ||| || |||||||| |||||||||||||| ||||||||
Sbjct: 349 aagctgtnagatggattaaccgcatgnccaattccccgaaataatacaggggcctcaatt 290
Query: 1077 tttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtgtga 1136
|| || ||||||||||| ||||||||||| || || ||||||||| ||||||| || |||
Sbjct: 289 ttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatcaaagtatga 230
Query: 1137 tcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctggatcc 1196
|| |||||| |||| | || ||||| |||| |||||||||||| ||||||||
Sbjct: 229 tcaccttcagcatcagtggcagcataattaatgtgatcaataaccattgcctctggatcc 170
Query: 1197 tcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||| ||||||
Sbjct: 169 tcatcaaaatcaaccccacactctgttgcaatg 137
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1136_A05
Length = 120823
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 63482 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 63423
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 63422 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 63363
Query: 649 agtattcc 656
||||||||
Sbjct: 63362 agtattcc 63355
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 63651 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 63592
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 63591 aactttgaaggatgttga 63574
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 61906 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 61847
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 61846 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 61795
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 63093 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 63034
Query: 798 tc 799
||
Sbjct: 63033 tc 63032
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 63827 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 63777
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 62396 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 62338
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 61191 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 61132
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 61131 aagtatgatcaccttcagcatc 61110
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 63281 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 63222
Query: 719 att 721
|||
Sbjct: 63221 att 63219
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 60975 cctcatcaaaatcaaccccacactctgttgcaatg 60941
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 61671 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 61614
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 64130 tatttgtggtacaggtacacaaatgagaagatgaagaa 64093
>gb|AACV01015405.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015405, whole
genome shotgun sequence
Length = 10828
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 3700 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 3641
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 3640 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 3581
Query: 649 agtattcc 656
||||||||
Sbjct: 3580 agtattcc 3573
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 3869 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 3810
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 3809 aactttgaaggatgttga 3792
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 2124 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 2065
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 2064 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 2013
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 3311 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 3252
Query: 798 tc 799
||
Sbjct: 3251 tc 3250
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 4045 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 3995
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 2614 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 2556
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 1409 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 1350
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 1349 aagtatgatcaccttcagcatc 1328
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 3499 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 3440
Query: 719 att 721
|||
Sbjct: 3439 att 3437
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 1193 cctcatcaaaatcaaccccacactctgttgcaatg 1159
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 1889 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 1832
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 4348 tatttgtggtacaggtacacaaatgagaagatgaagaa 4311
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 5877106 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 5877047
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5877046 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 5876987
Query: 649 agtattcc 656
||||||||
Sbjct: 5876986 agtattcc 5876979
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 5877275 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 5877216
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 5877215 aactttgaaggatgttga 5877198
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 5875530 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 5875471
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 5875470 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 5875419
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 5876717 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 5876658
Query: 798 tc 799
||
Sbjct: 5876657 tc 5876656
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5877451 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 5877401
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5876020 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 5875962
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 5874815 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 5874756
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 5874755 aagtatgatcaccttcagcatc 5874734
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 5876905 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 5876846
Query: 719 att 721
|||
Sbjct: 5876845 att 5876843
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 5874599 cctcatcaaaatcaaccccacactctgttgcaatg 5874565
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 5875295 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 5875238
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 5877754 tatttgtggtacaggtacacaaatgagaagatgaagaa 5877717
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 3015327 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 3015268
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 3015267 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 3015208
Query: 649 agtattcc 656
||||||||
Sbjct: 3015207 agtattcc 3015200
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 3015496 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 3015437
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 3015436 aactttgaaggatgttga 3015419
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 3013751 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 3013692
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 3013691 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 3013640
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 3014938 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 3014879
Query: 798 tc 799
||
Sbjct: 3014878 tc 3014877
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 3015672 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 3015622
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 3014241 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 3014183
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 3013036 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 3012977
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 3012976 aagtatgatcaccttcagcatc 3012955
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 3015126 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 3015067
Query: 719 att 721
|||
Sbjct: 3015066 att 3015064
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 3012820 cctcatcaaaatcaaccccacactctgttgcaatg 3012786
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 3013516 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 3013459
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 3015975 tatttgtggtacaggtacacaaatgagaagatgaagaa 3015938
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 5832076 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 5832017
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5832016 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 5831957
Query: 649 agtattcc 656
||||||||
Sbjct: 5831956 agtattcc 5831949
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 5832245 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 5832186
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 5832185 aactttgaaggatgttga 5832168
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 5830500 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 5830441
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 5830440 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 5830389
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 5831687 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 5831628
Query: 798 tc 799
||
Sbjct: 5831627 tc 5831626
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5832421 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 5832371
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5830990 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 5830932
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 5829785 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 5829726
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 5829725 aagtatgatcaccttcagcatc 5829704
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 5831875 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 5831816
Query: 719 att 721
|||
Sbjct: 5831815 att 5831813
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 5829569 cctcatcaaaatcaaccccacactctgttgcaatg 5829535
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 5830265 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 5830208
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 5832724 tatttgtggtacaggtacacaaatgagaagatgaagaa 5832687
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 143 bits (72), Expect = 3e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
|||| |||||| |||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct: 5921034 ccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaactgaactt 5920975
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5920974 gaacatcatcagcaacatacggcttccagctggtcccagaccattcgtagatctcaacag 5920915
Query: 649 agtattcc 656
||||||||
Sbjct: 5920914 agtattcc 5920907
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 443 accagtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcagg 502
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 5921203 accagtatatccaagcctctggtactcaactttgaactggaaaactccataaacatctgg 5921144
Query: 503 aactttgaaggatgttga 520
||||||||||||||||||
Sbjct: 5921143 aactttgaaggatgttga 5921126
Score = 103 bits (52), Expect = 2e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| ||||||||||||||||| ||||| || || |||||||| | | ||||
Sbjct: 5919458 cctgcataacagaaaccagtgatatagccgaccctgtgagagatggaggggaagccaact 5919399
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcag 1012
||| ||||||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 5919398 tagactttgggtttgctgagtatgctgacggagaggcggataagactttcag 5919347
Score = 99.6 bits (50), Expect = 4e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 5920645 cccctctcatggaagacccatttgcttgtttctgtcacaaattgttcatttccagctttc 5920586
Query: 798 tc 799
||
Sbjct: 5920585 tc 5920584
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
|||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5921379 gttatgaatctttcatactcattatgcctgtaagggcgcactggaatctgc 5921329
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 5919948 gttgctaaacagatcgagtgatccagatatcaagacccgagcattgtttcttgcctgca 5919890
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 5918743 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 5918684
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 5918683 aagtatgatcaccttcagcatc 5918662
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 659 gtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaac 718
|||||| || |||||||||||||| || ||||| |||||||||||||||| ||||| ||
Sbjct: 5920833 gtcatcattgatgcggtacatgccaggctcatttgtctccccaaccttgttatgcttgac 5920774
Query: 719 att 721
|||
Sbjct: 5920773 att 5920771
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 5918527 cctcatcaaaatcaaccccacactctgttgcaatg 5918493
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1014 accaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcct 1071
||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct: 5919223 accaagctgttagatggattaaccgcatgtccaattccccgaaataatacaggggcct 5919166
Score = 52.0 bits (26), Expect = 8e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 5921682 tatttgtggtacaggtacacaaatgagaagatgaagaa 5921645
>gb|AQ287533.1|AQ287533 nbxb0030O06r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030O06r, DNA sequence
Length = 684
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 218 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 159
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 158 aagtatgatcaccttcagcatc 137
>gb|AQ365660.2|AQ365660 nbxb0064A08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0064A08f, DNA sequence
Length = 305
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1069 cctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatca 1128
||||||| || || ||||||||||| ||||||||||| || || ||||||||| ||||||
Sbjct: 188 cctcaattttctttgaccccagtatcacatctgactggatgaggtcatcaccagcaatca 129
Query: 1129 aggtgtgatcgccttcaacatc 1150
| || ||||| |||||| ||||
Sbjct: 128 aagtatgatcaccttcagcatc 107
>gb|AQ579392.1|AQ579392 nbxb0084G04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0084G04r, DNA sequence
Length = 740
Score = 61.9 bits (31), Expect = 8e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||||||| ||||||
Sbjct: 22 cctcatcaaaatcaaccccacactctgttgcaatg 56
>gb|AU077998.1|AU077998 AU077998 Oryza sativa Ariete seed Oryza sativa (japonica
cultivar-group) cDNA clone g131c8, mRNA sequence
Length = 435
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaa 349
|||||||||||||||||||||| ||||| |||||||| || | ||| ||||||||
Sbjct: 344 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaa 399
>gb|AU161286.1|AU161286 AU161286 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61218, mRNA sequence
Length = 471
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaa 349
|||||||||||||||||||||| ||||| |||||||| || | ||| ||||||||
Sbjct: 78 tatttgtggtacaggtacacaaatgagaagatgaagaaggctcccattgttgaaaa 23
>gb|AU077999.1|AU077999 AU077999 Oryza sativa Ariete seed Oryza sativa (japonica
cultivar-group) cDNA clone g132c7, mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.18
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaa 331
|||||||||||||||||| ||| ||||| ||||||||
Sbjct: 406 tatttgtggtacaggtactcaaatgagaagatgaagaa 443
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24,
complete sequence
Length = 150503
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 100072 gaaaagctggagttgcacatcatcag 100097
>gb|AACV01005858.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005858, whole
genome shotgun sequence
Length = 55681
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 41839 gaaaagctggagttgcacatcatcag 41864
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 795805 gaaaagctggagttgcacatcatcag 795830
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 2375341 gaaaagctggagttgcacatcatcag 2375366
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 2567703 gaaaagctggagttgcacatcatcag 2567728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 2383340 gaaaagctggagttgcacatcatcag 2383365
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 575 gaaaaactggagttgcacatcatcag 600
||||| ||||||||||||||||||||
Sbjct: 2383230 gaaaagctggagttgcacatcatcag 2383255
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,439,495
Number of Sequences: 438736
Number of extensions: 1439495
Number of successful extensions: 8090
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7838
Number of HSP's gapped (non-prelim): 204
length of query: 1263
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1242
effective length of database: 2,791,206,460
effective search space: 3466678423320
effective search space used: 3466678423320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)