BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB649260.1|CB649260 OSJNEb13B13.r OSJNEb Oryza sativa (j... 335 2e-089
gb|CB654929.1|CB654929 OSJNEc07N11.r OSJNEc Oryza sativa (j... 335 2e-089
gb|CB656495.1|CB656495 OSJNEc10O11.r OSJNEc Oryza sativa (j... 335 2e-089
gb|CB656768.1|CB656768 OSJNEc11H19.r OSJNEc Oryza sativa (j... 335 2e-089
gb|CB658929.1|CB658929 OSJNEc15G08.f OSJNEc Oryza sativa (j... 335 2e-089
gb|CB658930.1|CB658930 OSJNEc15G08.r OSJNEc Oryza sativa (j... 335 2e-089
gb|CB659445.1|CB659445 OSJNEc16H04.r OSJNEc Oryza sativa (j... 335 2e-089
gb|CB671654.1|CB671654 OSJNEe05F07.r OSJNEe Oryza sativa (j... 335 2e-089
dbj|AK065341.1| Oryza sativa (japonica cultivar-group) cDNA... 335 2e-089
dbj|AK099348.1| Oryza sativa (japonica cultivar-group) cDNA... 335 2e-089
dbj|AK104328.1| Oryza sativa (japonica cultivar-group) cDNA... 335 2e-089
ref|XM_477251.1| Oryza sativa (japonica cultivar-group), mRNA 335 2e-089
ref|XM_477252.1| Oryza sativa (japonica cultivar-group), mRNA 335 2e-089
ref|XM_506239.2| PREDICTED Oryza sativa (japonica cultivar-... 335 2e-089
ref|XM_507358.1| PREDICTED Oryza sativa (japonica cultivar-... 335 2e-089
dbj|AK104826.1| Oryza sativa (japonica cultivar-group) cDNA... 327 5e-087
gb|AU093101.1|AU093101 AU093101 Rice callus Oryza sativa (j... 313 7e-083
gb|CB669352.1|CB669352 OSJNEe01M11.r OSJNEe Oryza sativa (j... 309 1e-081
gb|C97614.1|C97614 C97614 Rice callus Oryza sativa (japonic... 303 7e-080
gb|AU094067.1|AU094067 AU094067 Rice panicle at flowering s... 299 1e-078
gb|AU166115.1|AU166115 AU166115 Rice panicle shorter than 3... 299 1e-078
gb|AU184277.1|AU184277 AU184277 Rice root Oryza sativa (jap... 299 1e-078
gb|AU166106.1|AU166106 AU166106 Rice panicle shorter than 3... 268 4e-069
gb|D15762.1|D15762 RICC1203A Rice callus Oryza sativa (japo... 264 6e-068
gb|CF325741.1|CF325741 JMT1--04-B08.g1 AtJMT-overexpressing... 230 8e-058
gb|C73907.1|C73907 C73907 Rice panicle (longer than 10cm) O... 178 3e-042
gb|AU166101.1|AU166101 AU166101 Rice panicle shorter than 3... 176 1e-041
gb|CF322636.1|CF322636 HDN--01-K07.g1 OsHDAC1-overexpressin... 172 2e-040
gb|CF322858.1|CF322858 HDN--02-E08.g1 OsHDAC1-overexpressin... 172 2e-040
gb|CB671518.1|CB671518 OSJNEe05C07.r OSJNEe Oryza sativa (j... 167 1e-038
dbj|AK070712.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
ref|XM_470161.1| Oryza sativa (japonica cultivar-group), mRNA 153 2e-034
gb|AU058031.1|AU058031 AU058031 Rice callus Oryza sativa (j... 133 1e-028
gb|CV723911.1|CV723911 root--05-C18.g1 Rice root lambda pha... 117 9e-024
gb|CB671517.1|CB671517 OSJNEe05C07.f OSJNEe Oryza sativa (j... 115 3e-023
dbj|AP003812.1| Oryza sativa (japonica cultivar-group) chro... 101 5e-019
dbj|AP003738.3| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
dbj|AP006266.3| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
gb|AACV01015560.1| Oryza sativa (japonica cultivar-group) c... 101 5e-019
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 101 5e-019
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 101 5e-019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 101 5e-019
gb|AU182031.1|AU182031 AU182031 Rice callus (2001) Oryza sa... 80 2e-012
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 70 2e-009
gb|AACV01008212.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|AU184325.1|AU184325 AU184325 Rice root Oryza sativa (jap... 66 3e-008
gb|CB684901.1|CB684901 OSJNEf14N23.f OSJNEf Oryza sativa (j... 64 1e-007
gb|CB645144.1|CB645144 OSJNEb06K17.r OSJNEb Oryza sativa (j... 62 4e-007
gb|CB650401.1|CB650401 OSJNEb14N05.r OSJNEb Oryza sativa (j... 62 4e-007
gb|CB655819.1|CB655819 OSJNEc09J08.r OSJNEc Oryza sativa (j... 62 4e-007
gb|CB660104.1|CB660104 OSJNEd01J08.r OSJNEd Oryza sativa (j... 62 4e-007
gb|CB666943.1|CB666943 OSJNEd14A23.f OSJNEd Oryza sativa (j... 62 4e-007
ref|NM_190260.1| Oryza sativa (japonica cultivar-group), p... 62 4e-007
dbj|AK099626.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AP003316.4| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01002843.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AB157894.2| Oryza sativa (japonica cultivar-group) DNA,... 56 3e-005
gb|DU168691.1|DU168691 UCDRdSpm829B_3.1 UCD RdSpm Rice Inse... 56 3e-005
gb|DU168900.1|DU168900 UCDRGT3575_5.1 UCD RGT Rice Insertio... 56 3e-005
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|AACV01018990.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
dbj|AP005524.3| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|CB652977.1|CB652977 OSJNEc03I24.f OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656617.1|CB656617 OSJNEc11D03.f OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656618.1|CB656618 OSJNEc11D03.r OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656623.1|CB656623 OSJNEc11D06.f OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656624.1|CB656624 OSJNEc11D06.r OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656657.1|CB656657 OSJNEc11E05.f OSJNEc Oryza sativa (j... 54 1e-004
gb|CB656752.1|CB656752 OSJNEc11H09.f OSJNEc Oryza sativa (j... 54 1e-004
gb|CB674097.1|CB674097 OSJNEe08P21.r OSJNEe Oryza sativa (j... 54 1e-004
dbj|AK060834.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
ref|XM_475503.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
gb|AC108522.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AC129719.2| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AACV01012526.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NT_107215.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|C74708.1|C74708 C74708 Rice cDNA from immature leaf incl... 50 0.002
gb|AU068603.1|AU068603 AU068603 Rice callus Oryza sativa (j... 50 0.002
gb|AU078599.1|AU078599 AU078599 Rice callus Oryza sativa (j... 50 0.002
gb|CF326624.1|CF326624 JMT1--06-J07.g1 AtJMT-overexpressing... 50 0.002
gb|AU311998.1|AU311998 AU311998 Oryza sativa anther cDNA Or... 50 0.002
gb|AU311999.1|AU311999 AU311999 Oryza sativa anther cDNA Or... 50 0.002
gb|CB656753.1|CB656753 OSJNEc11H09.r OSJNEc Oryza sativa (j... 46 0.026
gb|AACV01013120.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 46 0.026
dbj|AP002071.2| Oryza sativa (japonica cultivar-group) geno... 46 0.026
dbj|AP002854.2| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.026
ref|XM_483782.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.10
dbj|AK061015.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.41
dbj|AK064961.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.41
emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P... 42 0.41
ref|NT_107086.1| Oryza sativa chromosome 12, . PAC P0243A04... 42 0.41
gb|AACV01025632.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01028910.1| Oryza sativa (japonica cultivar-group) C... 42 0.41
gb|CH402047.1| Oryza sativa (japonica cultivar-group) scaff... 42 0.41
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
>gb|CB649260.1|CB649260 OSJNEb13B13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13B13 3', mRNA sequence
Length = 822
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 647 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 588
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 587 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 528
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 527 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 468
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 467 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 408
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 407 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 359
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 303 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 259
>gb|CB654929.1|CB654929 OSJNEc07N11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07N11 3', mRNA sequence
Length = 768
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 637 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 578
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 577 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 518
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 517 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 458
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 457 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 398
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 397 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 349
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 293 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 249
>gb|CB656495.1|CB656495 OSJNEc10O11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10O11 3', mRNA sequence
Length = 825
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 698 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 639
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 638 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 579
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 578 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 519
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 518 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 459
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 458 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 410
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 354 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 310
>gb|CB656768.1|CB656768 OSJNEc11H19.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H19 3', mRNA sequence
Length = 845
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 629 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 570
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 569 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 510
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 509 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 450
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 449 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 390
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 389 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 341
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 285 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 241
>gb|CB658929.1|CB658929 OSJNEc15G08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15G08 5', mRNA sequence
Length = 770
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 646 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 587
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 586 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 527
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 526 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 467
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 466 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 407
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 406 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 358
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 302 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 258
>gb|CB658930.1|CB658930 OSJNEc15G08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15G08 3', mRNA sequence
Length = 872
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 697 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 638
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 637 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 578
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 577 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 518
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 517 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 458
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 457 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 409
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 353 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 309
>gb|CB659445.1|CB659445 OSJNEc16H04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16H04 3', mRNA sequence
Length = 817
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 642 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 583
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 582 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 523
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 522 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 463
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 462 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 403
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 402 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 354
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 298 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 254
>gb|CB671654.1|CB671654 OSJNEe05F07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05F07 3', mRNA sequence
Length = 696
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 617 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggccccgatgattgacaac 558
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 557 ccagacttcaaggatgatccatacatttatgcttttgacagcctgaagtacattggcatt 498
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 497 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 438
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || |||||||||||||||||||||| |||||| || |||||| ||
Sbjct: 437 gagttggccaagacattcgcagaggagacatggggcaagcccaaggatgctgagaaggct 378
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 377 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 329
>dbj|AK065341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E04, full
insert sequence
Length = 1586
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 939 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 998
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 999 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1058
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1059 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1118
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1119 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1178
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1179 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1227
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1283 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1327
>dbj|AK099348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025I16, full
insert sequence
Length = 1556
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 912 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 971
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 972 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1031
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1032 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1091
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1092 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1151
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1152 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1200
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1256 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1300
>dbj|AK104328.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H03, full
insert sequence
Length = 1675
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 933 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 992
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 993 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1052
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1053 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1112
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1113 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1172
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1173 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1221
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1277 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1321
>ref|XM_477251.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1539
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 911 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 970
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 971 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1030
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1031 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1090
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1091 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1150
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1151 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1199
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1255 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1299
>ref|XM_477252.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1646
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 904 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 963
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 964 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1023
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1024 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1083
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1084 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1143
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1144 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1192
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1248 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1292
>ref|XM_506239.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1058_C08.28-2
mRNA
Length = 1585
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 939 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 998
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 999 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1058
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1059 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1118
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1119 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1178
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1179 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1227
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1283 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1327
>ref|XM_507358.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1058_C08.28-2
mRNA
Length = 1557
Score = 335 bits (169), Expect = 2e-089
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 913 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 972
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 973 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1032
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1033 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1092
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1093 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1152
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1153 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1201
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1257 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1301
>dbj|AK104826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F11, full
insert sequence
Length = 1539
Score = 327 bits (165), Expect = 5e-087
Identities = 258/289 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||| ||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 911 caaaagaaaatcaggaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 970
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 971 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 1030
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 1031 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 1090
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1091 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 1150
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1151 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 1199
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1255 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1299
>gb|AU093101.1|AU093101 AU093101 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C62439, mRNA sequence
Length = 706
Score = 313 bits (158), Expect = 7e-083
Identities = 257/289 (88%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
|||||||||||||||| |||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 46 caaaagaaaatcaaga-ccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 104
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 105 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 164
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || | |
Sbjct: 165 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccnt 224
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 225 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 284
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 285 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 333
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 389 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 433
>gb|CB669352.1|CB669352 OSJNEe01M11.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01M11 3', mRNA sequence
Length = 807
Score = 309 bits (156), Expect = 1e-081
Identities = 255/288 (88%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||| || |||||| || |||||||||||||| ||||| ||||||
Sbjct: 694 caaaagaaaatcaagaaccttatctaccaaggcaaatggaaggcaccgatgatcgacaac 635
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 634 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 575
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| | |||
Sbjct: 574 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgcccct 515
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 514 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 455
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaag 293
||||| || ||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 454 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaag 407
Score = 42.1 bits (21), Expect = 0.41
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| |||| ||||||||||| ||||||| |||||| |||||
Sbjct: 350 cgatgagaaggttgactctgatgcagaggatggcaaggattctga 306
>gb|C97614.1|C97614 C97614 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60481_8Z, mRNA sequence
Length = 653
Score = 303 bits (153), Expect = 7e-080
Identities = 257/289 (88%), Gaps = 2/289 (0%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
|||||||||||||||| |||||||||||| || |||||||||||||| ||||| |||| |
Sbjct: 7 caaaagaaaatcaaga-ccctaactaccaaggcaaatggaaggcaccgatgatcgaca-c 64
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 65 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 124
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 125 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 184
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 185 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 244
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 245 gcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 293
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 349 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 393
>gb|AU094067.1|AU094067 AU094067 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2206, mRNA sequence
Length = 711
Score = 299 bits (151), Expect = 1e-078
Identities = 235/263 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 439 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 498
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 499 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 558
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 559 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 618
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 619 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 678
Query: 246 gctttcgatgaggctgagaaaaa 268
||||| || ||||| ||||||||
Sbjct: 679 gcttttgacgaggcagagaaaaa 701
>gb|AU166115.1|AU166115 AU166115 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31575, mRNA sequence
Length = 559
Score = 299 bits (151), Expect = 1e-078
Identities = 235/263 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 287 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 346
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 347 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 406
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 407 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 466
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 467 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 526
Query: 246 gctttcgatgaggctgagaaaaa 268
||||| || ||||| ||||||||
Sbjct: 527 gcttttgacgaggcagagaaaaa 549
>gb|AU184277.1|AU184277 AU184277 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1821, mRNA sequence
Length = 449
Score = 299 bits (151), Expect = 1e-078
Identities = 235/263 (89%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 177 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 236
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 237 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 296
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| || |||
Sbjct: 297 gagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacgaccct 356
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 357 gagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggct 416
Query: 246 gctttcgatgaggctgagaaaaa 268
||||| || ||||| ||||||||
Sbjct: 417 gcttttgacgaggcagagaaaaa 439
>gb|AU166106.1|AU166106 AU166106 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31519, mRNA sequence
Length = 627
Score = 268 bits (135), Expect = 4e-069
Identities = 225/256 (87%)
Strand = Plus / Plus
Query: 39 aaatggaaggcacctatgattgacaacccagatttcaaggatgatccgtacatttatgca 98
||||||||| |||| ||||| |||| || ||| |||||||||||||| ||||| |||||
Sbjct: 16 aaatggaagncaccgatgatcgacanccnagacttcaaggatgatccatacatctatgct 75
Query: 99 tttgacagcctgaaatacattggcattgagctgtggcaggttaaatcaggcactttgttt 158
|||||||||||||| ||||||||||||||| |||||||||| |||||||| ||| |||||
Sbjct: 76 tttgacagcctgaagtacattggcattgagttgtggcaggtcaaatcaggtactctgttt 135
Query: 159 gacaacatcatcatcactgatgatcctgcgttggccaagacttttgcagaggagacatgg 218
|||||| || | || ||||| || |||| |||||||||||| || |||||||||||||||
Sbjct: 136 gacaacttccttattactgacgaccctgagttggccaagacattcgcagaggagacatgg 195
Query: 219 ggcaagcacaaggaggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaa 278
|||||||||||||| || |||||| ||||||| || ||||| |||||||||||||||||
Sbjct: 196 ggcaagcacaaggatgctgagaaggctgcttttgacgaggcagagaaaaagaaggaagag 255
Query: 279 gaggaagccgccaagg 294
|||||||| |||||||
Sbjct: 256 gaggaagctgccaagg 271
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 327 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 371
>gb|D15762.1|D15762 RICC1203A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1203A, mRNA sequence
Length = 329
Score = 264 bits (133), Expect = 6e-068
Identities = 214/241 (88%)
Strand = Plus / Plus
Query: 54 atgattgacaacccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaa 113
||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 3 atgatcgacaacccagacttcaaggatgatccatacatctatgcttttgacagcctgaag 62
Query: 114 tacattggcattgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatc 173
||||||||||||||| |||||||||| |||||||| ||| ||||||||||| || | ||
Sbjct: 63 tacattggcattgagttgtggcaggtcaaatcaggtactctgtttgacaacttccttatt 122
Query: 174 actgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcacaaggag 233
||||| || |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 123 actgacgaccctgagttggccaagacattcgcagaggagacatggggcaagcacaaggat 182
Query: 234 gcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaag 293
|| |||||| ||||||| || ||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 183 gctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaag 242
Query: 294 g 294
|
Sbjct: 243 g 243
>gb|CF325741.1|CF325741 JMT1--04-B08.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-B08, mRNA sequence
Length = 592
Score = 230 bits (116), Expect = 8e-058
Identities = 191/216 (88%)
Strand = Plus / Minus
Query: 79 atgatccgtacatttatgcatttgacagcctgaaatacattggcattgagctgtggcagg 138
||||||| ||||| ||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 592 atgatccatacatctatgcttttgacagcctgaagtacattggcattgagttgtggcagg 533
Query: 139 ttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggccaaga 198
| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||||||
Sbjct: 532 tcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggccaaga 473
Query: 199 cttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttcgatgagg 258
| || ||||||||||||||||||||||||||||| || |||||| ||||||| || ||||
Sbjct: 472 cattcgcagaggagacatggggcaagcacaaggatgctgagaaggctgcttttgacgagg 413
Query: 259 ctgagaaaaagaaggaagaagaggaagccgccaagg 294
| ||||||||||||||||| |||||||| |||||||
Sbjct: 412 cagagaaaaagaaggaagaggaggaagctgccaagg 377
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 321 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 277
>gb|C73907.1|C73907 C73907 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E21005_1A, mRNA sequence
Length = 472
Score = 178 bits (90), Expect = 3e-042
Identities = 153/174 (87%)
Strand = Plus / Plus
Query: 121 gcattgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatg 180
|||||||| |||||||||| |||||||| ||| ||||||||||| || | || ||||| |
Sbjct: 1 gcattgagttgtggcaggtcaaatcaggtactctgtttgacaacttccttattactgacg 60
Query: 181 atcctgcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagaga 240
| |||| |||||||||||| || ||||||||||||||||||||||||||||| || ||||
Sbjct: 61 accctgagttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgaga 120
Query: 241 agactgctttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
|| ||||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 121 aggctgcttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 174
>gb|AU166101.1|AU166101 AU166101 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31502, mRNA sequence
Length = 559
Score = 176 bits (89), Expect = 1e-041
Identities = 176/203 (86%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 93 tatgcatttgacagcctgaaatacattggc-attgagctgtggcaggttaaatcaggcac 151
||||| ||||||| |||||| ||||||||| |||||| |||||||||| |||||||| ||
Sbjct: 2 tatgcttttgacancctgaagtacattggccattgagttgtggcaggtcaaatcaggtac 61
Query: 152 tttgtttgacaacatcatcatcactgatgatcctgcgttggccaagacttttgcagagga 211
| ||||||||| | || | || ||||| || |||| |||||||||||| || ||||||||
Sbjct: 62 tctgtttgaca-cttccttattactgacgaccctgagttggccaagacattcgcagagga 120
Query: 212 gacatggggcaagcacaaggaggcagagaagactgctttcgatgaggctgagaaaaagaa 271
|||||||||||| |||||||| || |||||| ||||||| || ||||| |||||||||||
Sbjct: 121 gacatggggcaancacaaggatgctgagaaggctgcttttgacgaggcagagaaaaagaa 180
Query: 272 ggaagaagaggaagccgccaagg 294
|||||| |||||||| |||||||
Sbjct: 181 ggaagaggaggaagctgccaagg 203
>gb|CF322636.1|CF322636 HDN--01-K07.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--01-K07, mRNA sequence
Length = 528
Score = 172 bits (87), Expect = 2e-040
Identities = 114/123 (92%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 405 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 464
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 465 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 524
Query: 126 gag 128
|||
Sbjct: 525 gag 527
>gb|CF322858.1|CF322858 HDN--02-E08.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-E08, mRNA sequence
Length = 524
Score = 172 bits (87), Expect = 2e-040
Identities = 114/123 (92%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 402 caaaagaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaac 461
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 462 ccagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcatt 521
Query: 126 gag 128
|||
Sbjct: 522 gag 524
>gb|CB671518.1|CB671518 OSJNEe05C07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C07 3', mRNA sequence
Length = 443
Score = 167 bits (84), Expect = 1e-038
Identities = 171/200 (85%)
Strand = Plus / Minus
Query: 87 tacatttatgcatttgacagcctgaaatacattggcattgagctgtggcaggttaaatca 146
||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 440 tacatttatgcttttgacagcctgaagtacattggcattgagttgtggcaggtcaaatca 381
Query: 147 ggcactttgtttgacaacatcatcatcactgatgatcctgcgttggccaagacttttgca 206
|| ||||||||||||||| || | || ||| | |||| |||||||||||| ||||||
Sbjct: 380 ggtactttgtttgacaacttccttatttctggcggccctgagttggccaagacatttgca 321
Query: 207 gaggagacatggggcaagcacaaggaggcagagaagactgctttcgatgaggctgagaaa 266
|||| ||||||||||||||||||||| | |||||| |||||| | | ||| ||||||
Sbjct: 320 gaggggacatggggcaagcacaaggatggtgagaagggtgcttttgtcggggcagagaaa 261
Query: 267 aagaaggaagaagaggaagc 286
||||||||||| | ||||||
Sbjct: 260 aagaaggaagagggggaagc 241
>dbj|AK070712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060M04, full
insert sequence
Length = 1780
Score = 153 bits (77), Expect = 2e-034
Identities = 185/221 (83%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||| | ||||||||||| ||| |||| |||||||||||||| |||| ||||
Sbjct: 955 caaaagaaacttaagaaccctaattacaagggcaaatggaaggcaccattgatccccaac 1014
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||||| |||||||||||| ||||| || || ||||| || |||| |||||||||||
Sbjct: 1015 ccagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcatt 1074
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| | ||||||||||| |||
Sbjct: 1075 gagctgtggcaggttaagtcgggaactttgtttgacaacattcttatcactgatgaccct 1134
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagca 226
| || ||||||| |||||||| || || |||| ||||||
Sbjct: 1135 gagtatgccaagaaatttgcagaagaaacctgggccaagca 1175
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 1282 gaggatgaggcggacgatgacaaggc 1307
>ref|XM_470161.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1329
Score = 153 bits (77), Expect = 2e-034
Identities = 185/221 (83%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||| | ||||||||||| ||| |||| |||||||||||||| |||| ||||
Sbjct: 850 caaaagaaacttaagaaccctaattacaagggcaaatggaaggcaccattgatccccaac 909
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||||| |||||||||||| ||||| || || ||||| || |||| |||||||||||
Sbjct: 910 ccagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcatt 969
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| | ||||||||||| |||
Sbjct: 970 gagctgtggcaggttaagtcgggaactttgtttgacaacattcttatcactgatgaccct 1029
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagca 226
| || ||||||| |||||||| || || |||| ||||||
Sbjct: 1030 gagtatgccaagaaatttgcagaagaaacctgggccaagca 1070
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 1177 gaggatgaggcggacgatgacaaggc 1202
>gb|AU058031.1|AU058031 AU058031 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61549_6Z, mRNA sequence
Length = 462
Score = 133 bits (67), Expect = 1e-028
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgc 247
|||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 4 gttggccaagacattcgcagaggagacatggggcaagcacaaggatgctgagaaggctgc 63
Query: 248 tttcgatgaggctgagaaaaagaaggaagaagaggaagccgccaagg 294
||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 64 ttttgacgaggcagagaaaaagaaggaagaggaggaagctgccaagg 110
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 166 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 210
>gb|CV723911.1|CV723911 root--05-C18.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--05-C18, mRNA sequence
Length = 482
Score = 117 bits (59), Expect = 9e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 204 gcagaggagacatggggcaagcacaaggaggcagagaagactgctttcgatgaggctgag 263
||||||||||||||||||||||||||||| || |||||| ||||||| || ||||| |||
Sbjct: 475 gcagaggagacatggggcaagcacaaggatgctgagaaggctgcttttgacgaggcagag 416
Query: 264 aaaaagaaggaagaagaggaagccgccaagg 294
|||||||||||||| |||||||| |||||||
Sbjct: 415 aaaaagaaggaagaggaggaagctgccaagg 385
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 329 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 285
>gb|CB671517.1|CB671517 OSJNEe05C07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C07 5', mRNA sequence
Length = 887
Score = 115 bits (58), Expect = 3e-023
Identities = 89/98 (90%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccc-taactaccagggtaaatggaaggcacctatgattgacaa 64
|||||||||||||||||||| ||||||||| || |||||||||||||| ||||| |||||
Sbjct: 790 caaaagaaaatcaagaacccctaactaccaaggcaaatggaaggcaccgatgatcgacaa 849
Query: 65 cccagatttcaaggatgatccgtacatttatgcatttg 102
|||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 850 cccagacttcaaggatgatccatacatctatgcttttg 887
>dbj|AP003812.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1145_E04,
*** SEQUENCING IN PROGRESS ***
Length = 119199
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 30973 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 31032
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 31033 agttgtggcaggtta 31047
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 31148 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 31207
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 31208 aagacattcgcagaggagacatggggcaagcacaagga 31245
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 30826 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 30885
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 31327 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 31377
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 31896 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 31940
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1058_C08
Length = 117923
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 105660 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 105719
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 105720 agttgtggcaggtta 105734
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 105835 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 105894
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 105895 aagacattcgcagaggagacatggggcaagcacaagga 105932
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 105513 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 105572
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 106014 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 106064
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 106583 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 106627
>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0003K21
Length = 158810
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 54911 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 54970
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 54971 agttgtggcaggtta 54985
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 55086 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 55145
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 55146 aagacattcgcagaggagacatggggcaagcacaagga 55183
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 54764 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 54823
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 55265 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 55315
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 55834 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 55878
>gb|AACV01015560.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015560, whole
genome shotgun sequence
Length = 22662
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 20057 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 19998
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 19997 agttgtggcaggtta 19983
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 19882 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 19823
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 19822 aagacattcgcagaggagacatggggcaagcacaagga 19785
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 20204 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 20145
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 19703 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 19653
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 19134 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 19090
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 8127960 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 8128019
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 8128020 agttgtggcaggtta 8128034
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 8128135 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 8128194
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 8128195 aagacattcgcagaggagacatggggcaagcacaagga 8128232
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 8127813 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 8127872
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 8128314 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 8128364
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 8128883 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 8128927
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 1997872 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 1997931
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 1997932 agttgtggcaggtta 1997946
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 1998047 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 1998106
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 1998107 aagacattcgcagaggagacatggggcaagcacaagga 1998144
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 1997725 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 1997784
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 1998226 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 1998276
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 1998795 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 1998839
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 8051497 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 8051556
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 8051557 agttgtggcaggtta 8051571
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 8051672 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 8051731
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 8051732 aagacattcgcagaggagacatggggcaagcacaagga 8051769
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 8051350 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 8051409
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 8051851 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 8051901
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 8052420 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 8052464
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 101 bits (51), Expect = 5e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 8171888 cagacttcaaggatgatccatacatctatgcttttgacagcctgaagtacattggcattg 8171947
Query: 127 agctgtggcaggtta 141
|| ||||||||||||
Sbjct: 8171948 agttgtggcaggtta 8171962
Score = 99.6 bits (50), Expect = 2e-018
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
||||| |||||||| ||| ||||||||||| || | || ||||| || |||| |||||||
Sbjct: 8172063 caggtcaaatcaggtactctgtttgacaacttccttattactgacgaccctgagttggcc 8172122
Query: 195 aagacttttgcagaggagacatggggcaagcacaagga 232
||||| || |||||||||||||||||||||||||||||
Sbjct: 8172123 aagacattcgcagaggagacatggggcaagcacaagga 8172160
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 8171741 agaaaatcaagaaccctaactaccaaggcaaatggaaggcaccgatgatcgacaacccag 8171800
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 232 aggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaagagg 282
|||| |||||| ||||||| || ||||| ||||||||||||||||| ||||
Sbjct: 8172242 aggctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggagg 8172292
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 350 cgatgacaaggccgactctgatgccgaggatgacaaggactctga 394
|||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 8172811 cgatgagaaggctgactctgatgcagaggatggcaaggattctga 8172855
>gb|AU182031.1|AU182031 AU182031 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C62980, mRNA sequence
Length = 449
Score = 79.8 bits (40), Expect = 2e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 220 gcaagcacaaggaggcagagaagactgctttcgatgaggctgagaaaaagaaggaagaag 279
|||||| |||||| || |||||| ||||||| || ||||| ||||||||||||||||| |
Sbjct: 1 gcaagcncaaggatgctgagaaggctgcttttgacgaggcagagaaaaagaaggaagagg 60
Query: 280 aggaagccgccaagg 294
||||||| |||||||
Sbjct: 61 aggaagctgccaagg 75
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 107182 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 107123
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 107122 agctgtggcaggtta 107108
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 107034 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 106975
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 106974 aagaaatttgcagaagaaacctgggccaagca 106943
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 107329 aagaaccctaattacaagggcaaatggaaggcacc 107295
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 106529 gaggatgaggcggacgatgacaaggc 106504
>gb|AACV01008212.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008212, whole
genome shotgun sequence
Length = 22754
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 20643 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 20702
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 20703 agctgtggcaggtta 20717
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 20791 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 20850
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 20851 aagaaatttgcagaagaaacctgggccaagca 20882
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 20496 aagaaccctaattacaagggcaaatggaaggcacc 20530
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 21296 gaggatgaggcggacgatgacaaggc 21321
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 1306662 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 1306603
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 1306602 agctgtggcaggtta 1306588
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 1306514 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 1306455
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 1306454 aagaaatttgcagaagaaacctgggccaagca 1306423
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 1306809 aagaaccctaattacaagggcaaatggaaggcacc 1306775
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 1306009 gaggatgaggcggacgatgacaaggc 1305984
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 8369639 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 8369580
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 8369579 agctgtggcaggtta 8369565
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 8369491 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 8369432
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 8369431 aagaaatttgcagaagaaacctgggccaagca 8369400
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 8369786 aagaaccctaattacaagggcaaatggaaggcacc 8369752
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 8368986 gaggatgaggcggacgatgacaaggc 8368961
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 35635802 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 35635743
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 35635742 agctgtggcaggtta 35635728
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 35635654 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 35635595
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 35635594 aagaaatttgcagaagaaacctgggccaagca 35635563
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 35635949 aagaaccctaattacaagggcaaatggaaggcacc 35635915
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 35635149 gaggatgaggcggacgatgacaaggc 35635124
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 67 cagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattg 126
|||||| |||||||||||| ||||| || || ||||| || |||| ||||||||||||
Sbjct: 34739537 cagattacaaggatgatccttacatctacgcttttgatagtttgaaccacattggcattg 34739478
Query: 127 agctgtggcaggtta 141
|||||||||||||||
Sbjct: 34739477 agctgtggcaggtta 34739463
Score = 56.0 bits (28), Expect = 3e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 135 caggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttggcc 194
|||||||| || || ||||||||||||||||| | ||||||||||| |||| || |||
Sbjct: 34739389 caggttaagtcgggaactttgtttgacaacattcttatcactgatgaccctgagtatgcc 34739330
Query: 195 aagacttttgcagaggagacatggggcaagca 226
|||| |||||||| || || |||| ||||||
Sbjct: 34739329 aagaaatttgcagaagaaacctgggccaagca 34739298
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 aagaaccctaactaccagggtaaatggaaggcacc 52
||||||||||| ||| |||| ||||||||||||||
Sbjct: 34739684 aagaaccctaattacaagggcaaatggaaggcacc 34739650
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 321 gaggatgaggcagacgatgacaaggc 346
||||||||||| ||||||||||||||
Sbjct: 34738884 gaggatgaggcggacgatgacaaggc 34738859
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,391,672
Number of Sequences: 438736
Number of extensions: 1391672
Number of successful extensions: 15377
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14528
Number of HSP's gapped (non-prelim): 844
length of query: 725
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 704
effective length of database: 2,791,206,460
effective search space: 1965009347840
effective search space used: 1965009347840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)