BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA... 208 3e-051
dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA... 200 8e-049
gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (j... 190 7e-046
gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA ... 170 7e-040
gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (j... 165 4e-038
gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (j... 165 4e-038
dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA... 165 4e-038
dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA... 165 4e-038
dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA... 165 4e-038
ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Oz... 165 4e-038
gb|AU181264.1|AU181264 AU181264 Rice callus (2001) Oryza sa... 123 1e-025
gb|C98487.1|C98487 C98487 Rice panicle at flowering stage O... 117 9e-024
gb|AU225181.1|AU225181 AU225181 Oryza sativa Koshihikari pi... 117 9e-024
gb|CV733900.1|CV733900 FLO--09-A09.b1 Rice flower lambda ph... 117 9e-024
gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) c... 117 9e-024
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 117 9e-024
dbj|AP000836.1| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 117 9e-024
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 117 9e-024
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
gb|CO435743.1|CO435743 OsMR809 5MT resistant rice mutant cD... 113 1e-022
gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japo... 88 8e-015
gb|AU068544.1|AU068544 AU068544 Rice callus Oryza sativa (j... 78 8e-012
gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
ref|NT_080056.2| Oryza sativa (japonica cultivar-group) 72 5e-010
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromoso... 72 5e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressin... 64 1e-007
gb|CF325923.1|CF325923 JMT1--04-J16.g1 AtJMT-overexpressing... 62 5e-007
gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (... 54 1e-004
gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AG209543.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full
insert sequence
Length = 1196
Score = 208 bits (105), Expect = 3e-051
Identities = 379/470 (80%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 428 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 487
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 488 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 547
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 548 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 607
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 608 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 667
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 668 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 727
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || |||||| |||| ||||| | || || || ||
Sbjct: 728 gatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatat 787
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| |||||||| |||||| ||||| || | || |||| || |||||
Sbjct: 788 gtcggacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcc 844
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 845 tgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 894
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full
insert sequence
Length = 3178
Score = 208 bits (105), Expect = 3e-051
Identities = 379/470 (80%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 2387 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 2446
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 2447 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 2506
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 2507 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 2566
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 2567 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 2626
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 2627 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 2686
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || |||||| |||| ||||| | || || || ||
Sbjct: 2687 gatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatat 2746
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| |||||||| |||||| ||||| || | || |||| || |||||
Sbjct: 2747 gtcggacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcc 2803
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 2804 tgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 2853
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full
insert sequence
Length = 1196
Score = 208 bits (105), Expect = 3e-051
Identities = 379/470 (80%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 428 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 487
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 488 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 547
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 548 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 607
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 608 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 667
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 668 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 727
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || |||||| |||| ||||| | || || || ||
Sbjct: 728 gatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatat 787
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| |||||||| |||||| ||||| || | || |||| || |||||
Sbjct: 788 gtcggacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcc 844
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 845 tgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 894
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full
insert sequence
Length = 3385
Score = 208 bits (105), Expect = 3e-051
Identities = 379/470 (80%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 2569 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 2628
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 2629 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 2688
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 2689 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 2748
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 2749 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 2808
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 2809 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 2868
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || |||||| |||| ||||| | || || || ||
Sbjct: 2869 gatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatat 2928
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| |||||||| |||||| ||||| || | || |||| || |||||
Sbjct: 2929 gtcggacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcc 2985
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 2986 tgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 3035
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full
insert sequence
Length = 1885
Score = 200 bits (101), Expect = 8e-049
Identities = 378/470 (80%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
||||||||| || |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 1117 gaagtggtcgccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 1176
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 1177 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 1236
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 1237 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 1296
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 1297 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 1356
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 1357 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 1416
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || |||||| |||| ||||| | || || || ||
Sbjct: 1417 gatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatat 1476
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| |||||||| |||||| ||||| || | || |||| || |||||
Sbjct: 1477 gtcggacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcc 1533
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 1534 tgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 1583
>gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M21 3', mRNA sequence
Length = 814
Score = 190 bits (96), Expect = 7e-046
Identities = 367/457 (80%), Gaps = 3/457 (0%)
Strand = Plus / Minus
Query: 14 aagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggcatca 73
|||||||| |||||||||||||| ||||| | || ||||| || |||||| | | |||
Sbjct: 804 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtctggatct 745
Query: 74 ccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttc 133
||||| ||||||| || || ||||| ||||| | |||| |||||||| | ||| |
Sbjct: 744 ccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaattat 685
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 684 gacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcat 625
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
||||||||||| |||||||||||| | || || |||||||| | || || || |||
Sbjct: 624 gttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcactc 565
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
||||| ||||| ||||| ||||| |||||||| ||||| |||||||| | ||||| |||
Sbjct: 564 tcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgcc 505
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| || ||||| || |||||| |||| ||||| | || || || ||||| ||||||||
Sbjct: 504 catcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcggacgcgtcg 445
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|||||||| |||||| ||||| || | || |||| || ||||| ||||||||||||
Sbjct: 444 tccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgagctgcctcgc 388
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|| ||||| ||||| |||||||||||||| |||||||
Sbjct: 387 ctccatgagaaagtgaggagctccatgtttttctgct 351
>gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030021000_PLATE_B11_82_092.ab1 similar to ESTs
AU068544(C30430),C98487(E0325),D23445(C2825),, mRNA
sequence
Length = 634
Score = 170 bits (86), Expect = 7e-040
Identities = 375/470 (79%), Gaps = 4/470 (0%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 152 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 211
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||| | | ||| ||||| ||||||| || || ||||| ||||| | |||| |||||
Sbjct: 212 tcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgcca 271
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||| | ||| | ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 272 tccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggcc 331
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
|| || ||||||||||||||||| |||||||||||| | || || |||||||| |
Sbjct: 332 aacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagct 391
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|| || || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct: 392 agtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctcc 451
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| ||||| ||||| || ||||| || | ||| |||| ||||| | || || || ||
Sbjct: 452 gatttgctatgcccatcttgctgctgctcnagtgggcacattcctcaagttcgaagatat 511
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||| |||||||| ||||||| ||||||| ||||| || | || |||| || |||||
Sbjct: 512 gtcggacgcgtcgtccagcc---gaggaggtcatacgtctgtcggaagtgtaccggtgcc 568
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||| ||||| |||| |||||||||||| | |||||||
Sbjct: 569 tgagctgcctcgcctccatga-gaagtgaggagctccatggttttctgct 617
>gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09G16 3', mRNA sequence
Length = 678
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 459 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 400
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 399 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 340
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 339 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 280
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 279 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 220
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 219 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 163
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 162 ctgcataacaaagtcaggagctccatgttcttctgct 126
>gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09J04 3', mRNA sequence
Length = 776
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 540 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 481
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 480 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 421
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 420 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 361
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 360 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 301
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 300 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 244
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 243 ctgcataacaaagtcaggagctccatgttcttctgct 207
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full
insert sequence
Length = 772
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 237 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 296
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 297 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 356
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 357 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 416
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 417 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 476
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 477 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 533
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 534 ctgcataacaaagtcaggagctccatgttcttctgct 570
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full
insert sequence
Length = 3047
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2538 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2597
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 2598 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 2657
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 2658 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 2717
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 2718 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 2777
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 2778 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 2834
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 2835 ctgcataacaaagtcaggagctccatgttcttctgct 2871
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full
insert sequence
Length = 3027
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2528 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2587
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 2588 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 2647
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 2648 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 2707
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 2708 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 2767
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 2768 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 2824
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 2825 ctgcataacaaagtcaggagctccatgttcttctgct 2861
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA
Length = 2715
Score = 165 bits (83), Expect = 4e-038
Identities = 274/337 (81%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2380 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2439
Query: 194 gttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctc 253
| || || || |||||||| ||| ||| ||||| | |||||||| || || || ||
Sbjct: 2440 atccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctt 2499
Query: 254 tcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcc 313
|| || || |||||||||||||| |||||||| ||||| ||||| || | ||||||||
Sbjct: 2500 tcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcg 2559
Query: 314 cacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcc 373
|| |||||||| || ||||| ||| |||| | | || || |||||||| || ||||
Sbjct: 2560 catctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcg 2619
Query: 374 tccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgc 433
|| ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 2620 tcgagccatggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgc 2676
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||| ||||||||||||||||||||||||||||||
Sbjct: 2677 ctgcataacaaagtcaggagctccatgttcttctgct 2713
>gb|AU181264.1|AU181264 AU181264 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C11152, mRNA sequence
Length = 446
Score = 123 bits (62), Expect = 1e-025
Identities = 172/208 (82%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 263 taccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctcgct 322
|||||||||||||| |||||||| ||||| ||||| || | |||||||| || ||||||
Sbjct: 43 taccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgct 102
Query: 323 gcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccag 382
|| || ||||| ||| |||| | | || || |||||||| || |||| || |||||
Sbjct: 103 gctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccat 162
Query: 383 ggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgac 442
|| || ||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 163 ggtggc---catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataac 219
Query: 443 aaagtcaggagctccatgttcttctgct 470
||||||||||||||||||||||||||||
Sbjct: 220 aaagtcaggagctccatgttcttctgct 247
>gb|C98487.1|C98487 C98487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0325_6Z, mRNA sequence
Length = 552
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 303 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 362
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 363 agctccatgttcttctgct 381
Score = 44.1 bits (22), Expect = 0.11
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctggga-tgattggaacaacaaggcccacccactatca 192
||||||||||| ||| | || ||||||| |||||||||| |||||||| || || |||||
Sbjct: 44 gacttctacatntgtccgcacgctgggaatgattggaactacaaggcctacacattatca 103
Query: 193 t 193
|
Sbjct: 104 t 104
Score = 42.1 bits (21), Expect = 0.42
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 265 ccagaggagcacgacagccatctcagtggttgc 297
|||||||||||| |||||||| ||||| |||||
Sbjct: 179 ccagaggagcactacagccatatcagtcgttgc 211
>gb|AU225181.1|AU225181 AU225181 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0114, mRNA sequence
Length = 365
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 268 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 209
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 208 agctccatgttcttctgct 190
>gb|CV733900.1|CV733900 FLO--09-A09.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-A09,
mRNA sequence
Length = 404
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 123 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 182
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 183 agctccatgttcttctgct 201
>gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000677, whole
genome shotgun sequence
Length = 43096
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9022 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 8963
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 8962 agctccatgttcttctgct 8944
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 10037 gacttctacatgtgtgcgcacgctggaatgattg 10004
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9240 taccagaggagcactacagccatatcagt 9212
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9628368 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 9628309
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 9628308 agctccatgttcttctgct 9628290
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 9611867 ttctacatgtgtgctcatgctgggatgattg 9611837
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 9610721 gtaccagaggagcacgacggccatctcag 9610693
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 9629383 gacttctacatgtgtgcgcacgctggaatgattg 9629350
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9628586 taccagaggagcactacagccatatcagt 9628558
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9628208 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 9628149
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 9628148 agctccatgttcttctgct 9628130
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 9611707 ttctacatgtgtgctcatgctgggatgattg 9611677
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 9610561 gtaccagaggagcacgacggccatctcag 9610533
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 9629223 gacttctacatgtgtgcgcacgctggaatgattg 9629190
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9628426 taccagaggagcactacagccatatcagt 9628398
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0038F12
Length = 190014
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 68589 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 68530
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 68529 agctccatgttcttctgct 68511
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 52088 ttctacatgtgtgctcatgctgggatgattg 52058
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 50942 gtaccagaggagcacgacggccatctcag 50914
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 69604 gacttctacatgtgtgcgcacgctggaatgattg 69571
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 68807 taccagaggagcactacagccatatcagt 68779
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9666278 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 9666219
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 9666218 agctccatgttcttctgct 9666200
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 9648678 ttctacatgtgtgctcatgctgggatgattg 9648648
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 9647532 gtaccagaggagcacgacggccatctcag 9647504
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 9667293 gacttctacatgtgtgcgcacgctggaatgattg 9667260
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9666496 taccagaggagcactacagccatatcagt 9666468
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9666278 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 9666219
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 9666218 agctccatgttcttctgct 9666200
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 9648678 ttctacatgtgtgctcatgctgggatgattg 9648648
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 9647532 gtaccagaggagcacgacggccatctcag 9647504
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 9667293 gacttctacatgtgtgcgcacgctggaatgattg 9667260
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9666496 taccagaggagcactacagccatatcagt 9666468
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 117 bits (59), Expect = 9e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 9630586 catacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcagg 9630527
Query: 452 agctccatgttcttctgct 470
|||||||||||||||||||
Sbjct: 9630526 agctccatgttcttctgct 9630508
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 9614085 ttctacatgtgtgctcatgctgggatgattg 9614055
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 9612939 gtaccagaggagcacgacggccatctcag 9612911
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| || ||||| |||||||
Sbjct: 9631601 gacttctacatgtgtgcgcacgctggaatgattg 9631568
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagt 291
|||||||||||||| |||||||| |||||
Sbjct: 9630804 taccagaggagcactacagccatatcagt 9630776
>gb|CO435743.1|CO435743 OsMR809 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 689
Score = 113 bits (57), Expect = 1e-022
Identities = 170/208 (81%), Gaps = 3/208 (1%)
Strand = Plus / Minus
Query: 263 taccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctcgct 322
|||||||||||||| |||||||| ||||| ||||| || | |||||||| || ||||||
Sbjct: 469 taccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgct 410
Query: 323 gcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccag 382
|| || ||||| ||| |||| | | || || |||||||| || |||| || |||||
Sbjct: 409 gctgctcaggtcagccagttcatcaagttngacgagatgtcggagacgtcgtcgagcca- 351
Query: 383 ggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgac 442
|| || ||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 350 --tggtggccatacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataac 293
Query: 443 aaagtcaggagctccatgttcttctgct 470
|||||||||||||||||||| || ||||
Sbjct: 292 aaagtcaggagctccatgttnttntgct 265
>gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2623_1A, mRNA sequence
Length = 276
Score = 87.7 bits (44), Expect = 8e-015
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 143 atgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcac 202
|||||||| |||||||| ||||||||||| || ||||| || || |||||||||||||||
Sbjct: 1 atgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcac 60
Query: 203 gacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtg 262
|| ||||||||||| | || || |||||||| || || || |||||||| |||
Sbjct: 61 gatgagataggtttntnccctgatgatctgcaggagcnagtgcactcactctcttatgtg 120
Query: 263 taccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctcgct 322
|| || | ||||| |||||||| ||||| |||||||| | ||||| ||||| || |||
Sbjct: 121 tatcananaagcacaacagccatatcagttgttgctccgatttgctatgcccatcttgct 180
Query: 323 gcagcccaggtgagcacgttcct 345
|| || |||||| |||| |||||
Sbjct: 181 gctgctcaggtgggcacattcct 203
>gb|AU068544.1|AU068544 AU068544 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30430_12Z, mRNA sequence
Length = 239
Score = 77.8 bits (39), Expect = 8e-012
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 428 cctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cctcgcctgcataacaaagtcaggagctccatgttcttctgct 43
>gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008615, whole
genome shotgun sequence
Length = 37475
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 11786 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 11727
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 11726 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 11670
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 11669 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 11624
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 12469 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 12410
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 12409 tcagtctggatctccagataatgttc 12384
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 12104 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 12054
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 12236 gacttctacatgtgtgctcatgctggaatgattg 12203
>ref|NT_080056.2| Oryza sativa (japonica cultivar-group)
Length = 253647
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 121940 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 121881
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 121880 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 121824
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 121823 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 121778
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 122623 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 122564
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 122563 tcagtctggatctccagataatgttc 122538
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 122258 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 122208
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 122390 gacttctacatgtgtgctcatgctggaatgattg 122357
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021 genomic
scaffold, whole genome shotgun sequence
Length = 2817894
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 1472453 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 1472394
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 1472393 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 1472337
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 1472336 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 1472291
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 1473136 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 1473077
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 1473076 tcagtctggatctccagataatgttc 1473051
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 1472771 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 1472721
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 1472903 gacttctacatgtgtgctcatgctggaatgattg 1472870
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 2958358 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 2958299
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 2958298 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 2958242
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 2958241 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 2958196
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 2959041 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 2958982
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 2958981 tcagtctggatctccagataatgttc 2958956
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 2958676 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 2958626
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 2958808 gacttctacatgtgtgctcatgctggaatgattg 2958775
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
complete sequence
Length = 127419
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 121940 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 121881
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 121880 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 121824
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 121823 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 121778
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 122623 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 122564
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 122563 tcagtctggatctccagataatgttc 122538
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 122258 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 122208
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 122390 gacttctacatgtgtgctcatgctggaatgattg 122357
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 71.9 bits (36), Expect = 5e-010
Identities = 134/166 (80%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| ||||| || ||||| || |||||| |||| ||||| | || || || |||||
Sbjct: 3532645 tgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcg 3532586
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
|||||||| |||||||| |||||| ||||| || | || |||| || ||||| |||
Sbjct: 3532585 gacgcgtcgtccagcca---aggaggtcatacgtctgtcggaagtgtaccggtgcctgag 3532529
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 3532528 ctgcctcgcctccatgagaaagtgaggagctccatgtttttctgct 3532483
Score = 61.9 bits (31), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||| |||||||| |||||||||||||| ||||| | || ||||| || ||
Sbjct: 3533328 gaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttt 3533269
Query: 61 tcagacggcatcaccagacaatgttc 86
|||| | | ||| ||||| |||||||
Sbjct: 3533268 tcagtctggatctccagataatgttc 3533243
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttc 217
||||| || ||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 3532963 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttc 3532913
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
||||||||||||||||| |||||||| |||||||
Sbjct: 3533095 gacttctacatgtgtgctcatgctggaatgattg 3533062
>gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-L03, mRNA sequence
Length = 601
Score = 63.9 bits (32), Expect = 1e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 193
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 511 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 570
>gb|CF325923.1|CF325923 JMT1--04-J16.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-J16, mRNA sequence
Length = 465
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgtt 462
||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 430 gtgcctgagctgcctcgcctccatgagaaagtgaggagctccatgtt 384
>gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071M13r, DNA
sequence
Length = 376
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 52 ttctacatgtgtgctcatgctgggatgattg 22
>gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000673, whole
genome shotgun sequence
Length = 39857
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 35007 ttctacatgtgtgctcatgctgggatgattg 34977
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 33861 gtaccagaggagcacgacggccatctcag 33833
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| ||||||||||||||||
Sbjct: 147514 ttctacatgtgtgctcatgctgggatgattg 147484
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 146368 gtaccagaggagcacgacggccatctcag 146340
>dbj|AG209543.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7030_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7030, genomic survey sequence
Length = 208
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 262 gtaccagaggagcacgacagccatctcag 290
|||||||||||||||||| ||||||||||
Sbjct: 73 gtaccagaggagcacgacggccatctcag 101
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,023,088
Number of Sequences: 438736
Number of extensions: 1023088
Number of successful extensions: 5128
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4953
Number of HSP's gapped (non-prelim): 167
length of query: 744
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 723
effective length of database: 2,791,206,460
effective search space: 2018042270580
effective search space used: 2018042270580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)