BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA... 504 e-140
emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC O... 232 2e-058
emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B... 232 2e-058
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 232 2e-058
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 232 2e-058
gb|AACV01024614.1| Oryza sativa (japonica cultivar-group) c... 232 2e-058
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 232 2e-058
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 232 2e-058
gb|AACV01024615.1| Oryza sativa (japonica cultivar-group) c... 105 3e-020
dbj|AP004181.2| Oryza sativa (japonica cultivar-group) chro... 64 9e-008
dbj|AP004887.1| Oryza sativa (japonica cultivar-group) chro... 64 9e-008
dbj|AK059059.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK119269.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AP004996.3| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
gb|AACV01003626.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|XM_464677.1| Oryza sativa (japonica cultivar-group), mRNA 64 9e-008
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 64 9e-008
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
gb|AQ446432.2|AQ446432 nbxb0069D18r CUGI Rice BAC Library O... 48 0.005
gb|AF499737.1| Oryza sativa (japonica cultivar-group) beta-... 48 0.005
gb|AF508799.1| Oryza sativa (japonica cultivar-group) beta-... 48 0.005
gb|AC104428.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AC107225.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AACV01005928.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP003922.2| Oryza sativa (japonica cultivar-group) geno... 46 0.021
dbj|AK102192.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
gb|AACV01002778.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.021
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.021
dbj|AP003297.3| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
ref|NM_192994.1| Oryza sativa (japonica cultivar-group), p... 44 0.084
dbj|AP005002.3| Oryza sativa (japonica cultivar-group) geno... 40 1.3
gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) c... 40 1.3
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 40 1.3
dbj|AP004817.3| Oryza sativa (japonica cultivar-group) geno... 40 1.3
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.3
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full
insert sequence
Length = 3036
Score = 504 bits (254), Expect = e-140
Identities = 482/557 (86%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 1007 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 1066
Query: 80 caaaattattacatgtattttggtggaaccaattttgagcggacagctggtggtccactt 139
||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 1067 caaaattattacatgtactttggtggaacaaattttgcacggacagctggtggtccactt 1126
Query: 140 cagataactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacct 199
|||||||| ||||| ||||||||||| ||||| || || |||||||| ||||| || |||
Sbjct: 1127 cagataacaagctacgattatgatgctccaatcgatgagtatggtatattaaggcagcct 1186
Query: 200 aagtgggggcatttgaaagacctacatgcagctattaaactttgtgaatcagctcttact 259
|||||||||||| ||||||| ||||| | ||||| ||||||||||| ||||||||| |
Sbjct: 1187 aagtgggggcatctgaaagatctacacactgctatcaaactttgtgagccagctcttatt 1246
Query: 260 gcagtagatggttcacctcattatgtaaaattagggcccatgcaggaggcacatgtgtat 319
||||| ||||| |||||||| ||| |||| ||||| | ||||| ||||||||||| |||
Sbjct: 1247 gcagtggatggctcacctcaatatataaagttaggatcaatgcaagaggcacatgtatat 1306
Query: 320 tccagtgaaaatgtccacacaaatggaagcatttcaggaaattcacagttttgctcagct 379
|||| || | | ||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 1307 tccactggagaagtccatacaaatggaagcatggcaggaaatgcacagatttgctcagct 1366
Query: 380 tttcttgccaacattgatgaacataaatatgcttcagtctggatttttggaaaatcttat 439
||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 1367 tttcttgccaatattgatgaacataaatatgcatcagtctggatctttggtaaatcttat 1426
Query: 440 agtctaccaccatggtctgtgagcatactaccagactgtgaaactgtggcttttaataca 499
||||||||||||||||||||||||||||||||||| || |||| |||||| || |||||
Sbjct: 1427 agtctaccaccatggtctgtgagcatactaccagattgcgaaaatgtggccttcaatact 1486
Query: 500 gccagggttggtacacaaacatcgnttttcaatgtcgaatctgggtcccccagctattca 559
|| || ||||| |||| || || |||| | ||| ||||||||||| ||||| ||||
Sbjct: 1487 gcacggattggtgcacagacttcagtttttactgtagaatctgggtctcccagtcgttca 1546
Query: 560 agtaggcataaacctag 576
||||| ||||| |||||
Sbjct: 1547 agtagacataagcctag 1563
>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 87778
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 79521 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 79462
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 79461 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 79402
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 79401 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 79342
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 79341 tggccttcaatac 79329
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 84091 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 84032
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 84031 tatgatgctccaatcgatgagtatggtat 84003
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 83880 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 83821
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 83820 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 83768
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 85608 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 85549
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 85548 caaaattattacatg 85534
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 155451
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 131873 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 131814
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 131813 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 131754
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 131753 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 131694
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 131693 tggccttcaatac 131681
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 136443 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 136384
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 136383 tatgatgctccaatcgatgagtatggtat 136355
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 136232 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 136173
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 136172 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 136120
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 137960 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 137901
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 137900 caaaattattacatg 137886
>ref|NT_107147.1| Oryza sativa (japonica cultivar-group)
Length = 1769098
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 1760841 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 1760782
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 1760781 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 1760722
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 1760721 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 1760662
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 1760661 tggccttcaatac 1760649
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1765411 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 1765352
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 1765351 tatgatgctccaatcgatgagtatggtat 1765323
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 1765200 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 1765141
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 1765140 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 1765088
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 1766928 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 1766869
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 1766868 caaaattattacatg 1766854
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 131873 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 131814
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 131813 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 131754
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 131753 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 131694
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 131693 tggccttcaatac 131681
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 136443 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 136384
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 136383 tatgatgctccaatcgatgagtatggtat 136355
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 136232 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 136173
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 136172 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 136120
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 137960 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 137901
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 137900 caaaattattacatg 137886
>gb|AACV01024614.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024614, whole
genome shotgun sequence
Length = 18577
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 17064 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 17005
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 17004 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 16945
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 16944 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 16885
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 16884 tggccttcaatac 16872
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111 genomic
scaffold, whole genome shotgun sequence
Length = 3984395
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 3160053 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 3159994
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 3159993 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 3159934
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 3159933 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 3159874
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 3159873 tggccttcaatac 3159861
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 3165044 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 3164985
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 3164984 tatgatgctccaatcgatgagtatggtat 3164956
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 3164833 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 3164774
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 3164773 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 3164721
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 3166561 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 3166502
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 3166501 caaaattattacatg 3166487
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 11208617 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 11208558
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 11208557 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 11208498
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 11208497 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 11208438
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 11208437 tggccttcaatac 11208425
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 11213608 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 11213549
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 11213548 tatgatgctccaatcgatgagtatggtat 11213520
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 11213397 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 11213338
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 11213337 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 11213285
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 11215125 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 11215066
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 11215065 caaaattattacatg 11215051
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 13816214 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 13816155
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 13816154 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 13816095
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 13816094 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 13816035
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 13816034 tggccttcaatac 13816022
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 13820784 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 13820725
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 13820724 tatgatgctccaatcgatgagtatggtat 13820696
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 13820573 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 13820514
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 13820513 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 13820461
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 13822301 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 13822242
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 13822241 caaaattattacatg 13822227
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 232 bits (117), Expect = 2e-058
Identities = 174/193 (90%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||||| || | | ||||| |||||||||||||| |||||||| |||
Sbjct: 13770494 aggcacatgtatattccactggagaagtccatacaaatggaagcatggcaggaaatgcac 13770435
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 13770434 agatttgctcagcttttcttgccaatattgatgaacataaatatgcatcagtctggatct 13770375
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 13770374 ttggtaaatcttatagtctaccaccatggtctgtgagcatactaccagattgcgaaaatg 13770315
Query: 486 tggcttttaatac 498
|||| || |||||
Sbjct: 13770314 tggccttcaatac 13770302
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 13775064 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 13775005
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 13775004 tatgatgctccaatcgatgagtatggtat 13774976
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 13774853 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 13774794
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 13774793 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 13774741
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 13776581 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 13776522
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 13776521 caaaattattacatg 13776507
>gb|AACV01024615.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024615, whole
genome shotgun sequence
Length = 8798
Score = 105 bits (53), Expect = 3e-020
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 98 tttggtggaaccaattttgagcggacagctggtggtccacttcagataactagctatgat 157
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 5371 tttggtggaacaaattttgcacggacagctggtggtccacttcagataacaagctacgat 5430
Query: 158 tatgatgcaccaattgacgaatatggtat 186
|||||||| ||||| || || ||||||||
Sbjct: 5431 tatgatgctccaatcgatgagtatggtat 5459
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||| ||||| || ||||||||||||||| ||||||| ||||| | ||||| ||||||
Sbjct: 5582 ggtatattaaggcagcctaagtgggggcatctgaaagatctacacactgctatcaaactt 5641
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagg 294
||||| ||||||||| |||||| ||||| |||||||| ||| |||| |||||
Sbjct: 5642 tgtgagccagctcttattgcagtggatggctcacctcaatatataaagttagg 5694
Score = 85.7 bits (43), Expect = 2e-014
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 aggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg-ggaagctta 79
||||| ||| |||||||||||||||||||||||||||| || ||| | || |||||||||
Sbjct: 3854 aggccagctgaagacagtgcttttgctgttgctcgtttctaccaaagaggtggaagctta 3913
Query: 80 caaaattattacatg 94
|||||||||||||||
Sbjct: 3914 caaaattattacatg 3928
>dbj|AP004181.2| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1136_G09,
*** SEQUENCING IN PROGRESS ***
Length = 131183
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 28010 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 27952
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 27951 tgctccgattgacgaatttggtat 27928
>dbj|AP004887.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0593D08, ***
SEQUENCING IN PROGRESS ***
Length = 156879
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 46646 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 46588
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 46587 tgctccgattgacgaatttggtat 46564
>dbj|AK059059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F12, full
insert sequence
Length = 1631
Score = 63.9 bits (32), Expect = 9e-008
Identities = 85/100 (85%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 86 tattacatgtattttggtggaaccaattttgagcggacagctggtggtccacttca-gat 144
||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 215 tattacatgtaccatggaggaaccaattttggccggacagctggtggtcc-cttcattgc 273
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggt 184
||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 274 aaccagctatgattatgatgctccgattgacgaatttggt 313
>dbj|AK119269.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A09, full
insert sequence
Length = 2571
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 2325 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 2267
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 2266 tgctccgattgacgaatttggtat 2243
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0027A02
Length = 140402
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 92306 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 92248
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 92247 tgctccgattgacgaatttggtat 92224
>gb|AACV01003626.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003626, whole
genome shotgun sequence
Length = 20734
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 13727 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 13669
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 13668 tgctccgattgacgaatttggtat 13645
>ref|XM_464677.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2190
Score = 63.9 bits (32), Expect = 9e-008
Identities = 85/100 (85%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 86 tattacatgtattttggtggaaccaattttgagcggacagctggtggtccacttca-gat 144
||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 901 tattacatgtaccatggaggaaccaattttggccggacagctggtggtcc-cttcattgc 959
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggt 184
||| ||||||||||||||||| || |||||||||| ||||
Sbjct: 960 aaccagctatgattatgatgctccgattgacgaatttggt 999
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 688313 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 688255
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 688254 tgctccgattgacgaatttggtat 688231
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 6773154 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 6773096
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 6773095 tgctccgattgacgaatttggtat 6773072
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 6773154 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 6773096
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 6773095 tgctccgattgacgaatttggtat 6773072
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 32251784 ttacaaaattattacatgta 32251803
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 63.9 bits (32), Expect = 9e-008
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 104 ggaaccaattttgagcggacagctggtggtccacttcagat-aactagctatgattatga 162
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 6657931 ggaaccaattttggccggacagctggtggtcc-cttcattgcaaccagctatgattatga 6657873
Query: 163 tgcaccaattgacgaatatggtat 186
||| || |||||||||| ||||||
Sbjct: 6657872 tgctccgattgacgaatttggtat 6657849
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 32202378 ttacaaaattattacatgta 32202397
>gb|AQ446432.2|AQ446432 nbxb0069D18r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0069D18r, DNA sequence
Length = 871
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 408 agctatgattatgatgctccacttgatgaatatggt 443
>gb|AF499737.1| Oryza sativa (japonica cultivar-group) beta-galactosidase mRNA,
complete cds
Length = 2919
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 960 agctatgattatgatgctccacttgatgaatatggt 995
>gb|AF508799.1| Oryza sativa (japonica cultivar-group) beta-galactosidase mRNA,
complete cds
Length = 2925
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 966 agctatgattatgatgctccacttgatgaatatggt 1001
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OJ1123F12, complete sequence
Length = 103330
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 117 agctatgattatgatgctccacttgatgaatatggt 152
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0026H19, complete sequence
Length = 150620
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 27911 agctatgattatgatgctccacttgatgaatatggt 27876
>gb|AACV01005928.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005928, whole
genome shotgun sequence
Length = 38852
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 15268 agctatgattatgatgctccacttgatgaatatggt 15233
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 1918826 agctatgattatgatgctccacttgatgaatatggt 1918791
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 3464033 agctatgattatgatgctccacttgatgaatatggt 3463998
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 3656395 agctatgattatgatgctccacttgatgaatatggt 3656360
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 3510369 agctatgattatgatgctccacttgatgaatatggt 3510334
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| ||| |||| |||||||||
Sbjct: 3510258 agctatgattatgatgctccacttgatgaatatggt 3510223
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0648C09
Length = 107522
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 86551 actagctatgactatgatgcaccgatcgatgaatatggt 86589
>dbj|AK102192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087B02, full
insert sequence
Length = 3309
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| ||| |||| ||||||||
Sbjct: 1251 agctatgattatgatgctccacttgatgaatatgg 1285
>gb|AACV01002778.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002778, whole
genome shotgun sequence
Length = 26946
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 20467 actagctatgactatgatgcaccgatcgatgaatatggt 20505
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 38070945 actagctatgactatgatgcaccgatcgatgaatatggt 38070983
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 12518328 actagctatgactatgatgcaccgatcgatgaatatggt 12518366
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0698A10
Length = 137348
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 71219 actagctatgactatgatgcaccgatcgatgaatatggt 71257
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 12247785 actagctatgactatgatgcaccgatcgatgaatatggt 12247823
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 37449506 actagctatgactatgatgcaccgatcgatgaatatggt 37449544
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.021
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| || || |||||||||
Sbjct: 37990275 actagctatgactatgatgcaccgatcgatgaatatggt 37990313
>dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full
insert sequence
Length = 3441
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| ||||||||||| || || ||||||||
Sbjct: 1005 actagctatgactatgatgcaccgatcgatgaatatgg 1042
>dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C09, full
insert sequence
Length = 3192
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| ||||||||||| || || ||||||||
Sbjct: 1227 actagctatgactatgatgcaccgatcgatgaatatgg 1264
>dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full
insert sequence
Length = 3186
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 83 aattattacatgtattttggtggaaccaattttgagcggacagctggtgg 132
||||||||||||||| ||||||||| || |||| || |||||||||||
Sbjct: 975 aattattacatgtatcatggtggaacaaactttggacgcacagctggtgg 1024
>ref|NM_192994.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2484
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 83 aattattacatgtattttggtggaaccaattttgagcggacagctggtgg 132
||||||||||||||| ||||||||| || |||| || |||||||||||
Sbjct: 862 aattattacatgtatcatggtggaacaaactttggacgcacagctggtgg 911
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0486G03
Length = 146713
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 139034 ttacaaaattattacatgta 139053
>gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005463, whole
genome shotgun sequence
Length = 12222
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 4526 ttacaaaattattacatgta 4507
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 7367377 ttacaaaattattacatgta 7367396
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0539D10
Length = 158691
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 46391 ttacaaaattattacatgta 46410
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 40.1 bits (20), Expect = 1.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttacaaaattattacatgta 96
||||||||||||||||||||
Sbjct: 18798720 ttacaaaattattacatgta 18798739
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 881,701
Number of Sequences: 438736
Number of extensions: 881701
Number of successful extensions: 15331
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14616
Number of HSP's gapped (non-prelim): 705
length of query: 588
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 567
effective length of database: 2,791,206,460
effective search space: 1582614062820
effective search space used: 1582614062820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)