BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF636584.1|BF636584 NF090F03DT1F1030 Drought Medicago tr... 119 3e-025
gb|CB894037.1|CB894037 EST646829 HOGA Medicago truncatula c... 119 3e-025
gb|AC144478.20| Medicago truncatula clone mth2-20b20, compl... 44 0.014
gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKI... 44 0.014
gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Med... 42 0.055
gb|BE325221.2|BE325221 NF114H07ST1F1063 Developing stem Med... 42 0.055
gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmo... 42 0.055
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 42 0.055
gb|AC144483.10| Medicago truncatula clone mth2-12f13, compl... 42 0.055
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 40 0.22
gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula c... 40 0.22
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.22
gb|AC140023.13| Medicago truncatula clone mth2-32h4, comple... 40 0.22
>gb|BF636584.1|BF636584 NF090F03DT1F1030 Drought Medicago truncatula cDNA clone NF090F03DT
5', mRNA sequence
Length = 627
Score = 119 bits (60), Expect = 3e-025
Identities = 194/239 (81%)
Strand = Plus / Minus
Query: 307 gattcatcccaaccaacctgaaggtttcgccaatgagaattcttccatcgcagtggatct 366
||||| ||||| ||||||||||| || ||||| || ||||| ||||| || | |||||
Sbjct: 328 gattcgtcccatccaacctgaagattgcgccattgtgaatttttccagcggacaggatcc 269
Query: 367 aagtcgccaatgcctgtgatcgtgcccatgtatcttcttacccctgaatcctctgtctca 426
||||| | || || ||||| |||||||| ||||| | ||| ||||||||||||||||||
Sbjct: 268 aagtcactgatcccagtgattgtgcccatatatctgcgtactcctgaatcctctgtctca 209
Query: 427 aagagcattctgaatcgcattccaagggacacttgtgtatacagagccttattgtatttt 486
|| | ||||||||||| |||||||||||| || || || |||||||| ||||| || ||
Sbjct: 208 aacatcattctgaatctcattccaagggaaacatgagtgtacagagctttattatacttg 149
Query: 487 gctaaagggatgacaaattctgatgggcntgcccttggattatagaaaatagtaaatgg 545
|| || || || |||||||| | |||| | |||||||||||| || |||||||||||
Sbjct: 148 gccaatggaatcacaaattcacaggggctagtccttggattataaaatatagtaaatgg 90
Score = 56.0 bits (28), Expect = 4e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 178 tcatcatctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcat 237
||||| ||||||||||||| |||||| || | ||||||||| ||||| || ||||| ||
Sbjct: 457 tcatcttctggcattcctggttgcttcgggaactttggcctaaaaaacggaggtggacaa 398
Query: 238 atataaaatggtgtagcaactggttcaatctcccatatcgaaac 281
|| || || || || ||||||||||||| ||||| || |||||
Sbjct: 397 atgtagaaaggagtcacaactggttcaatgtcccaaattgaaac 354
>gb|CB894037.1|CB894037 EST646829 HOGA Medicago truncatula cDNA clone HOGA-29H14, mRNA
sequence
Length = 833
Score = 119 bits (60), Expect = 3e-025
Identities = 205/254 (80%)
Strand = Plus / Minus
Query: 313 tcccaaccaacctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcg 372
||||| ||||||||||| || ||||| || ||||| ||||| || | ||||| |||||
Sbjct: 832 tcccatccaacctgaagattgcgccattgtgaatttttccagcggacaggatccaagtca 773
Query: 373 ccaatgcctgtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagc 432
| || || ||||| |||||||| ||||| | ||| |||||||||||||||||||| | |
Sbjct: 772 ctgatcccagtgattgtgcccatatatctgcgtactcctgaatcctctgtctcaaacatc 713
Query: 433 attctgaatcgcattccaagggacacttgtgtatacagagccttattgtattttgctaaa 492
|||||||||| |||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 712 attctgaatctcattccaagggaaacatgagtgtacagagctttattatacttggccaat 653
Query: 493 gggatgacaaattctgatgggcntgcccttggattatagaaaatagtaaatggnctacta 552
|| || |||||||| | |||| | |||||||||||| || ||||||||||| || ||
Sbjct: 652 ggaatcacaaattcacaggggctagtccttggattataaaatatagtaaatggactgtta 593
Query: 553 tttgcagcagcatg 566
|| | |||||||||
Sbjct: 592 ttcgaagcagcatg 579
>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
Length = 144248
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 301 gcagtcgattcatcccaaccaacctg 326
||||| ||||||||||||||||||||
Sbjct: 58823 gcagtggattcatcccaaccaacctg 58798
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
|||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 58384 tcctctgtttcaaagagcatcctgaaacgcataccaa 58348
>gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 274828
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 301 gcagtcgattcatcccaaccaacctg 326
||||| ||||||||||||||||||||
Sbjct: 223216 gcagtggattcatcccaaccaacctg 223241
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
|||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 223655 tcctctgtttcaaagagcatcctgaaacgcataccaa 223691
>gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF028B12ST 5', mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 301 gcagtcgattcatcccaaccaacct 325
||||| |||||||||||||||||||
Sbjct: 676 gcagtggattcatcccaaccaacct 652
>gb|BE325221.2|BE325221 NF114H07ST1F1063 Developing stem Medicago truncatula cDNA clone
NF114H07ST 5', mRNA sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
|||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 276 tcctctgtttcaaagagcatcctgaaacgcataccaa 240
>gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 301 gcagtcgattcatcccaaccaacct 325
||||| |||||||||||||||||||
Sbjct: 592 gcagtggattcatcccaaccaacct 568
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
|||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 478 tcctctgtttcaaagagcatcctgaaacgcataccaa 442
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtaca 25
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence
Length = 105599
Score = 42.1 bits (21), Expect = 0.055
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 535 atagtaaatggnctactatttgcagcagcatg 566
||||||||||| || ||||||||||||||||
Sbjct: 51167 atagtaaatggactgttatttgcagcagcatg 51198
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtac 300
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtac 339
>gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula cDNA clone mtgmacc120010c08,
mRNA sequence
Length = 463
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 463 cggccgcccgggcaggtaca 444
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence
Length = 152468
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 309 ttcatcccaaccaacctgaa 328
||||||||||||||||||||
Sbjct: 130187 ttcatcccaaccaacctgaa 130168
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,541
Number of Sequences: 392609
Number of extensions: 146541
Number of successful extensions: 10813
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10761
Number of HSP's gapped (non-prelim): 47
length of query: 626
length of database: 441,732,993
effective HSP length: 19
effective length of query: 607
effective length of database: 434,273,422
effective search space: 263603967154
effective search space used: 263603967154
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)