BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN28g01.yg.2.1
         (513 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC137603.16|  Medicago truncatula clone mth2-14b10, compl...    58   8e-007
gb|AC152184.1|  Medicago truncatula chromosome 7 BAC clone m...    40   0.18 
gb|AC122723.6|  Medicago truncatula clone mth2-5i15, complet...    40   0.18 
gb|AC169514.2|  Medicago truncatula chromosome 7 clone mth2-...    40   0.18 

>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
          Length = 109793

 Score = 58.0 bits (29), Expect = 8e-007
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 117   cagttcttgtcaaagtttgtccccggtatgatgccca 153
             ||||||| |||||||||||||| ||||||||||||||
Sbjct: 65269 cagttctggtcaaagtttgtcctcggtatgatgccca 65305



>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
            sequence
          Length = 103090

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 117  cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagct 164
            |||||||||||||||| || || |  ||||||||||| || |||||||
Sbjct: 4829 cagttcttgtcaaagtctgccctctatatgatgcccatagacgaagct 4782



>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
          Length = 105353

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 117   cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagct 164
             |||||||||||||||| || || |  ||||||||||| || |||||||
Sbjct: 76226 cagttcttgtcaaagtctgccctctatatgatgcccatagacgaagct 76179



>gb|AC169514.2| Medicago truncatula chromosome 7 clone mth2-60g7, *** SEQUENCING IN
              PROGRESS ***, 4 ordered pieces
          Length = 125283

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 250    gattttttgcaaataaaaaaggat 273
              ||||| ||||||||||||||||||
Sbjct: 110556 gatttgttgcaaataaaaaaggat 110533



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,164
Number of Sequences: 392609
Number of extensions: 176164
Number of successful extensions: 14078
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14052
Number of HSP's gapped (non-prelim): 26
length of query: 513
length of database: 441,732,993
effective HSP length: 19
effective length of query: 494
effective length of database: 434,273,422
effective search space: 214531070468
effective search space used: 214531070468
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)