BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 141 3e-032
gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago tr... 96 2e-018
gb|CX535313.1|CX535313 s13dNF39D04MJ042_388800 Methyl Jasmo... 96 2e-018
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 96 2e-018
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 96 2e-018
gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cD... 88 4e-016
emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A1... 68 4e-010
emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A1... 68 4e-010
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 68 4e-010
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 68 4e-010
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 64 6e-009
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 54 5e-006
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 54 5e-006
gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago tr... 50 8e-005
gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower M... 50 8e-005
gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula c... 50 8e-005
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 50 8e-005
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.021
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 42 0.021
gb|AJ500022.1|AJ500022 AJ500022 MTGIM Medicago truncatula c... 40 0.082
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.082
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.082
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.082
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.082
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 40 0.082
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.082
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.082
gb|CG974033.1|CG974033 MBEMV55TR mth2 Medicago truncatula g... 38 0.32
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 38 0.32
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 38 0.32
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 38 0.32
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 38 0.32
gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula c... 38 0.32
gb|CL314042.1|CL314042 mth2-131J23_OP Medicago truncatula B... 36 1.3
gb|AJ499471.1|AJ499471 AJ499471 MTGIM Medicago truncatula c... 36 1.3
gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula c... 36 1.3
gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula c... 36 1.3
gb|AJ847602.1|AJ847602 AJ847602 MtSTA Medicago truncatula c... 36 1.3
gb|AJ621849.1|AJ621849 AJ621849 Medicago truncatula J5 root... 36 1.3
gb|AC156628.11| Medicago truncatula clone mth2-131d13, WORK... 36 1.3
gb|AC146745.19| Medicago truncatula clone mth2-53p19, compl... 36 1.3
gb|AC174297.7| Medicago truncatula clone mth2-73p24, WORKIN... 36 1.3
gb|CG968549.1|CG968549 MBEDT61TRC mth2 Medicago truncatula ... 34 5.0
gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula c... 34 5.0
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 34 5.0
gb|AJ500456.1|AJ500456 AJ500456 MTGIM Medicago truncatula c... 34 5.0
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 34 5.0
gb|AJ500811.1|AJ500811 AJ500811 MTGIM Medicago truncatula c... 34 5.0
gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula c... 34 5.0
gb|AJ499725.1|AJ499725 AJ499725 MTGIM Medicago truncatula c... 34 5.0
gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula c... 34 5.0
gb|AJ499830.1|AJ499830 AJ499830 MTGIM Medicago truncatula c... 34 5.0
gb|AJ499867.1|AJ499867 AJ499867 MTGIM Medicago truncatula c... 34 5.0
gb|AJ846604.1|AJ846604 AJ846604 MtSN0 Medicago truncatula c... 34 5.0
gb|AJ846740.1|AJ846740 AJ846740 MtSN0 Medicago truncatula c... 34 5.0
gb|AJ847437.1|AJ847437 AJ847437 MtSTA Medicago truncatula c... 34 5.0
gb|AJ847745.1|AJ847745 AJ847745 MtSTA Medicago truncatula c... 34 5.0
gb|AJ847801.1|AJ847801 AJ847801 MtSTA Medicago truncatula c... 34 5.0
gb|AJ847834.1|AJ847834 AJ847834 MtSTA Medicago truncatula c... 34 5.0
gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 root... 34 5.0
gb|AC139707.10| Medicago truncatula clone mth2-16b22, compl... 34 5.0
gb|AC144343.8| Medicago truncatula clone mth2-12c21, comple... 34 5.0
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 141 bits (71), Expect = 3e-032
Identities = 170/203 (83%)
Strand = Plus / Plus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| || |||||||||||| | |||||||||||||| |||||||| || || ||
Sbjct: 62112 ctgaagtaaaacccaattgttgtgaaataacaagacagcattctgaagaagtcgaatcgg 62171
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||| | || || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 62172 tggccaagtcggtatacatctcgactcagtgtttgctctccattgccattagctatcttt 62231
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|| ||||||| ||| || || |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 62232 gcttcaaacatagaaatctggttgagacccacatctcttcctttcccaacttgtatgtac 62291
Query: 200 tcatggtgagtaacattgccttc 222
||||| ||||||||||| |||||
Sbjct: 62292 tcatgatgagtaacatttccttc 62314
Score = 50.1 bits (25), Expect = 8e-005
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 23 aagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
|||||| | |||| ||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 4592 aagtagtatccaactgttgtgaagtaaaaagacatcatccggaagaaatcaaa 4644
Score = 34.2 bits (17), Expect = 5.0
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
|||||||| ||||||| || |||| ||||| || |||||||||||||
Sbjct: 4828 tattcatgatgagtaatgtttccttgacgcaaggttgaattgaatcctg 4876
>gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago truncatula cDNA clone NF069A09DT
5', mRNA sequence
Length = 668
Score = 95.6 bits (48), Expect = 2e-018
Identities = 138/168 (82%)
Strand = Plus / Minus
Query: 47 taacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctc 106
||||| |||||||| |||||||||||||| || || || |||||||| | ||| || ||
Sbjct: 345 taacaggacagcattctgaagaaatcaaaacggtgcccaagccggtacacgtctcgactt 286
Query: 107 agcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgaga 166
|| || || || ||||| ||||| ||||| ||||| ||||||| || ||||| ||||||
Sbjct: 285 agtgtctgctctccatttccattagctatttttgcttcaaacatcgaaatttggttgaga 226
Query: 167 cctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|| ||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 225 ccaacatctcttcccttcccaacttgtatgtactcatgatgagtaaca 178
>gb|CX535313.1|CX535313 s13dNF39D04MJ042_388800 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 521
Score = 95.6 bits (48), Expect = 2e-018
Identities = 138/168 (82%)
Strand = Plus / Minus
Query: 47 taacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctc 106
||||| |||||||| |||||||||||||| || || || |||||||| | ||| || ||
Sbjct: 309 taacaggacagcattctgaagaaatcaaaacggtgcccaagccggtacacgtctcgactt 250
Query: 107 agcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgaga 166
|| || || || ||||| ||||| ||||| ||||| ||||||| || ||||| ||||||
Sbjct: 249 agtgtctgctctccatttccattagctatttttgcttcaaacatcgaaatttggttgaga 190
Query: 167 cctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|| ||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 189 ccaacatctcttcccttcccaacttgtatgtactcatgatgagtaaca 142
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 95.6 bits (48), Expect = 2e-018
Identities = 138/168 (82%)
Strand = Plus / Minus
Query: 47 taacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctc 106
||||| |||||||| |||||||||||||| || || || |||||||| | ||| || ||
Sbjct: 7756 taacaggacagcattctgaagaaatcaaaacggtgcccaagccggtacacgtctcgactt 7697
Query: 107 agcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgaga 166
|| || || || ||||| ||||| ||||| ||||| ||||||| || ||||| ||||||
Sbjct: 7696 agtgtctgctctccatttccattagctatttttgcttcaaacatcgaaatttggttgaga 7637
Query: 167 cctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|| ||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 7636 ccaacatctcttcccttcccaacttgtatgtactcatgatgagtaaca 7589
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 95.6 bits (48), Expect = 2e-018
Identities = 138/168 (82%)
Strand = Plus / Minus
Query: 47 taacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctc 106
||||| |||||||| |||||||||||||| || || || |||||||| | ||| || ||
Sbjct: 79153 taacaggacagcattctgaagaaatcaaaacggtgcccaagccggtacacgtctcgactt 79094
Query: 107 agcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgaga 166
|| || || || ||||| ||||| ||||| ||||| ||||||| || ||||| ||||||
Sbjct: 79093 agtgtctgctctccatttccattagctatttttgcttcaaacatcgaaatttggttgaga 79034
Query: 167 cctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|| ||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 79033 ccaacatctcttcccttcccaacttgtatgtactcatgatgagtaaca 78986
>gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cDNA clone pKV1-17D12, mRNA
sequence
Length = 617
Score = 87.7 bits (44), Expect = 4e-016
Identities = 137/168 (81%)
Strand = Plus / Minus
Query: 47 taacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctc 106
||||| |||||||| |||||||||||||| || || || |||||||| | ||| || ||
Sbjct: 198 taacaggacagcattctgaagaaatcaaaacggtgcccaagccggtacacgtctcgactt 139
Query: 107 agcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgaga 166
|| || || || ||||| ||||| ||||| ||||| ||||||| || |||| ||||||
Sbjct: 138 agtgtctgctctccatttccattagctatttttgcttcaaacatcgaactttggttgaga 79
Query: 167 cctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|| ||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 78 ccaacatctcttcccttcccaacttgtatgtactcatgatgagtaaca 31
>emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 765
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| |||| |||||| ||||| ||||||||||| || ||||| || |||||||||
Sbjct: 337 tcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattca 396
Query: 203 tggtgagtaacatt 216
|||||||| |||||
Sbjct: 397 tggtgagtgacatt 410
>emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 654
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| |||| |||||| ||||| ||||||||||| || ||||| || |||||||||
Sbjct: 322 tcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattca 381
Query: 203 tggtgagtaacatt 216
|||||||| |||||
Sbjct: 382 tggtgagtgacatt 395
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| |||| |||||| ||||| ||||||||||| || ||||| || |||||||||
Sbjct: 20890 tcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattca 20831
Query: 203 tggtgagtaacatt 216
|||||||| |||||
Sbjct: 20830 tggtgagtgacatt 20817
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| |||| |||||| ||||| ||||||||||| || ||||| || |||||||||
Sbjct: 11907 tcaaacattgatacttgattcagaccaacatcccttccctttccaacctgaatgtattca 11966
Query: 203 tggtgagtaacatt 216
|||||||| |||||
Sbjct: 11967 tggtgagtgacatt 11980
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 63.9 bits (32), Expect = 6e-009
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
||||| ||||| ||||||||||| ||||| || |||||||| || || |||||||| ||
Sbjct: 56801 tttgcttcaaaaagagatatttggttgagcccgacatccctaccctttccaacttggata 56860
Query: 197 tattcatggtgagtaa 212
|||||||| |||||||
Sbjct: 56861 tattcatgatgagtaa 56876
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 54.0 bits (27), Expect = 5e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||||||||| ||||| || |||||||||||||| || |||||
Sbjct: 195 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatt 149
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 54.0 bits (27), Expect = 5e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||||||||| ||||| || |||||||||||||| || |||||
Sbjct: 219 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatt 173
>gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago truncatula cDNA clone NF032G03DT
5', mRNA sequence
Length = 452
Score = 50.1 bits (25), Expect = 8e-005
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 23 aagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
|||||| | |||| ||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 157 aagtagtatccaactgttgtgaagtaaaaagacatcatccggaagaaatcaaa 105
>gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower Medicago truncatula cDNA clone
NF051G10FL 5', mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 8e-005
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|||||||||||| |||| | ||| |||||||||| ||||| ||||| | || |||||
Sbjct: 173 tcgccattgccacttgcgaccttggcctcaaacatggatatctgattcaagccaacatct 114
Query: 176 cttcctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaa 235
|||||||| || || || || |||||||| || || |||||||| | |||||||| ||
Sbjct: 113 cttcctttacctacctgtatatattcatgatgtgtcacattgccacctcgcaatgtacaa 54
Query: 236 ttgaa 240
|||||
Sbjct: 53 ttgaa 49
>gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula cDNA clone MTYA123, mRNA
sequence
Length = 634
Score = 50.1 bits (25), Expect = 8e-005
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 23 aagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
|||||| | |||| ||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 424 aagtagtatccaactgttgtgaagtaaaaagacatcatccggaagaaatcaaa 372
Score = 48.1 bits (24), Expect = 3e-004
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacattg 217
|||||||| || ||||||||||| || ||||| || || |||||||| ||||||| ||
Sbjct: 289 tgattgaggcccacatcccttcccttaccaacctgaatatattcatgatgagtaatgttt 230
Query: 218 ccttcgcgcaatgtggaattgaatcctg 245
|||| | ||| || |||||||||||||
Sbjct: 229 ccttgacacaaggttgaattgaatcctg 202
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 50.1 bits (25), Expect = 8e-005
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 23 aagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
|||||| | |||| ||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 5688 aagtagtatccaactgttgtgaagtaaaaagacatcatccggaagaaatcaaa 5636
Score = 34.2 bits (17), Expect = 5.0
Identities = 41/49 (83%)
Strand = Plus / Minus
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
|||||||| ||||||| || |||| ||||| || |||||||||||||
Sbjct: 5452 tattcatgatgagtaatgtttccttgacgcaaggttgaattgaatcctg 5404
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtact 299
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtact 340
>gb|AJ500022.1|AJ500022 AJ500022 MTGIM Medicago truncatula cDNA clone mtgmacc120011e10,
mRNA sequence
Length = 329
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cgcccgggcaggtactgaag 25
||||||||||||||||||||
Sbjct: 329 cgcccgggcaggtactgaag 310
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 1 cggccgcccgggcaggtact 20
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 445 cggccgcccgggcaggtact 426
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.082
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
>gb|CG974033.1|CG974033 MBEMV55TR mth2 Medicago truncatula genomic clone 5I14, DNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 26 tagaaaccaattgttgtgt 44
|||||||||||||||||||
Sbjct: 907 tagaaaccaattgttgtgt 889
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.32
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgatt 162
|||||||||||| |||| | ||| |||||||||| ||||| |||||
Sbjct: 65 tcgccattgccacttgcgaccttggcctcaaacatggatatctgatt 19
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 397 cggccgcccgggcaggtac 379
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07,
mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 4 cggccgcccgggcaggtac 22
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 6 cggccgcccgggcaggtac 24
>gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula cDNA clone mtgmacc120010c08,
mRNA sequence
Length = 463
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 463 cggccgcccgggcaggtac 445
>gb|CL314042.1|CL314042 mth2-131J23_OP Medicago truncatula BAC end sequences Medicago
truncatula genomic 5', DNA sequence
Length = 245
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 172 atcccttcctttgccaac 189
||||||||||||||||||
Sbjct: 214 atcccttcctttgccaac 197
>gb|AJ499471.1|AJ499471 AJ499471 MTGIM Medicago truncatula cDNA clone mtgmacc120004f06,
mRNA sequence
Length = 522
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3 ggccgcccgggcaggtac 20
||||||||||||||||||
Sbjct: 8 ggccgcccgggcaggtac 25
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
mRNA sequence
Length = 374
Score = 36.2 bits (18), Expect = 1.3
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
||| |||||||||||||||||
Sbjct: 369 gcgnccgcccgggcaggtact 349
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
mRNA sequence
Length = 527
Score = 36.2 bits (18), Expect = 1.3
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
||| |||||||||||||||||
Sbjct: 523 gcgnccgcccgggcaggtact 503
>gb|AJ847602.1|AJ847602 AJ847602 MtSTA Medicago truncatula cDNA clone MtTA04O18S6, mRNA
sequence
Length = 225
Score = 36.2 bits (18), Expect = 1.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactgaagtag 28
|||||||||||||||| |||||
Sbjct: 1 gcccgggcaggtactgtagtag 22
>gb|AJ621849.1|AJ621849 AJ621849 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs12, mRNA sequence
Length = 257
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 1 gcggccgcccgggcaggt 18
>gb|AC156628.11| Medicago truncatula clone mth2-131d13, WORKING DRAFT SEQUENCE
Length = 97770
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 atcctgaagaaatcaaag 76
||||||||||||||||||
Sbjct: 52692 atcctgaagaaatcaaag 52709
>gb|AC146745.19| Medicago truncatula clone mth2-53p19, complete sequence
Length = 121955
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 213 cattgccttcgcgcaatg 230
||||||||||||||||||
Sbjct: 76368 cattgccttcgcgcaatg 76351
>gb|AC174297.7| Medicago truncatula clone mth2-73p24, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 114191
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 213 cattgccttcgcgcaatg 230
||||||||||||||||||
Sbjct: 36174 cattgccttcgcgcaatg 36191
>gb|CG968549.1|CG968549 MBEDT61TRC mth2 Medicago truncatula genomic clone 34L2, DNA
sequence
Length = 920
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 151 agatatttgattgagac 167
|||||||||||||||||
Sbjct: 456 agatatttgattgagac 440
>gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula cDNA clone mtgmacc120011f04,
mRNA sequence
Length = 266
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtact 21
|||||||||||||||||
Sbjct: 266 ccgcccgggcaggtact 250
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 34.2 bits (17), Expect = 5.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
||||||| |||||||||||||
Sbjct: 14 gcggccggccgggcaggtact 34
>gb|AJ500456.1|AJ500456 AJ500456 MTGIM Medicago truncatula cDNA clone mtgmacc120016f01,
mRNA sequence
Length = 310
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4 gccgcccgggcaggtac 20
|||||||||||||||||
Sbjct: 310 gccgcccgggcaggtac 294
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 34.2 bits (17), Expect = 5.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
||||||| |||||||||||||
Sbjct: 552 gcggccgtccgggcaggtact 532
>gb|AJ500811.1|AJ500811 AJ500811 MTGIM Medicago truncatula cDNA clone mtgmacc120020e01,
mRNA sequence
Length = 584
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtact 21
|||||||||||||||||
Sbjct: 584 ccgcccgggcaggtact 568
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
mRNA sequence
Length = 321
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtact 21
|||||||||||||||||
Sbjct: 312 ccgcccgggcaggtact 296
>gb|AJ499725.1|AJ499725 AJ499725 MTGIM Medicago truncatula cDNA clone mtgmacc120007g05,
mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6 cgcccgggcaggtactg 22
|||||||||||||||||
Sbjct: 8 cgcccgggcaggtactg 24
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
mRNA sequence
Length = 298
Score = 34.2 bits (17), Expect = 5.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||| ||||||||||||||||
Sbjct: 5 gcgggcgcccgggcaggtact 25
>gb|AJ499830.1|AJ499830 AJ499830 MTGIM Medicago truncatula cDNA clone mtgmacc120009a06,
mRNA sequence
Length = 497
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6 cgcccgggcaggtactg 22
|||||||||||||||||
Sbjct: 497 cgcccgggcaggtactg 481
>gb|AJ499867.1|AJ499867 AJ499867 MTGIM Medicago truncatula cDNA clone mtgmacc120009e05,
mRNA sequence
Length = 384
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6 cgcccgggcaggtactg 22
|||||||||||||||||
Sbjct: 9 cgcccgggcaggtactg 25
>gb|AJ846604.1|AJ846604 AJ846604 MtSN0 Medicago truncatula cDNA clone MtN002E10S6, mRNA
sequence
Length = 424
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ846740.1|AJ846740 AJ846740 MtSN0 Medicago truncatula cDNA clone MtN009K02S6, mRNA
sequence
Length = 689
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ847437.1|AJ847437 AJ847437 MtSTA Medicago truncatula cDNA clone MtTA01G11S6, mRNA
sequence
Length = 272
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ847745.1|AJ847745 AJ847745 MtSTA Medicago truncatula cDNA clone MtTA07K18S6, mRNA
sequence
Length = 683
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ847801.1|AJ847801 AJ847801 MtSTA Medicago truncatula cDNA clone MtTA09A18S6, mRNA
sequence
Length = 737
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ847834.1|AJ847834 AJ847834 MtSTA Medicago truncatula cDNA clone MtTA10E21S6, mRNA
sequence
Length = 387
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 gcccgggcaggtactga 23
|||||||||||||||||
Sbjct: 1 gcccgggcaggtactga 17
>gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs773, mRNA sequence
Length = 424
Score = 34.2 bits (17), Expect = 5.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
||||||||||||||| |||||
Sbjct: 14 gcggccgcccgggcatgtact 34
>gb|AC139707.10| Medicago truncatula clone mth2-16b22, complete sequence
Length = 113689
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 145 aaacagagatatttgat 161
|||||||||||||||||
Sbjct: 19257 aaacagagatatttgat 19241
>gb|AC144343.8| Medicago truncatula clone mth2-12c21, complete sequence
Length = 130740
Score = 34.2 bits (17), Expect = 5.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 145 aaacagagatatttgat 161
|||||||||||||||||
Sbjct: 128194 aaacagagatatttgat 128178
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,204
Number of Sequences: 392609
Number of extensions: 66204
Number of successful extensions: 4858
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4770
Number of HSP's gapped (non-prelim): 86
length of query: 247
length of database: 441,732,993
effective HSP length: 19
effective length of query: 228
effective length of database: 434,273,422
effective search space: 99014340216
effective search space used: 99014340216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)