BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM12h10.yg.2.1
         (339 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC150782.12|  Medicago truncatula clone mth2-116a21, WORK...    50   1e-004
gb|AC158736.12|  Medicago truncatula clone mth2-165n2, WORKI...    50   1e-004
gb|BF641357.1|BF641357  NF061B11IN1F1092 Insect herbivory Me...    48   5e-004

>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
             unordered pieces
          Length = 118726

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 205   tttcagcaaaactcttgtgctgcacaacaaaaccacg 241
             |||| ||||||||||||||||  ||||||||||||||
Sbjct: 21387 tttcggcaaaactcttgtgctctacaacaaaaccacg 21351



>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
          Length = 118519

 Score = 50.1 bits (25), Expect = 1e-004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 205   tttcagcaaaactcttgtgctgcacaacaaaaccacg 241
             |||| ||||||||||||||||  ||||||||||||||
Sbjct: 11410 tttcggcaaaactcttgtgctctacaacaaaaccacg 11446



>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
           NF061B11IN 5', mRNA sequence
          Length = 660

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 207 tcagcaaaactcttgtgctgcacaacaaaacc 238
           ||||||||||||||||||| ||| ||||||||
Sbjct: 533 tcagcaaaactcttgtgctccaccacaaaacc 502



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,036
Number of Sequences: 392609
Number of extensions: 79036
Number of successful extensions: 5430
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5420
Number of HSP's gapped (non-prelim): 10
length of query: 339
length of database: 441,732,993
effective HSP length: 19
effective length of query: 320
effective length of database: 434,273,422
effective search space: 138967495040
effective search space used: 138967495040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)