BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 84 1e-014
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 84 1e-014
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 62 5e-008
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 83.8 bits (42), Expect = 1e-014
Identities = 198/250 (79%)
Strand = Plus / Minus
Query: 205 tttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacggtattttgcac 264
|||| |||||||||||||||| ||||||||||||||||| || || || |||||||| |
Sbjct: 21387 tttcggcaaaactcttgtgctctacaacaaaaccacggccggtggctcgatattttgctc 21328
Query: 265 caccatgaaggattgtccggccatagtaatggctcttagttcccatggaaaatgtgtaga 324
|||| || || || ||||||||| | |||| || ||| |||||||| || |||||||
Sbjct: 21327 caccgtgcagaatagtccggccaaaaaaatgactgcgagtgcccatggagaaggtgtaga 21268
Query: 325 acacagatgaaaaattcatttgcattgtgaagaaatcccagatagcaggtaggaaacctt 384
| || ||||||| | | |||||| || ||||| ||||||||||| | ||||| || |
Sbjct: 21267 aaacggatgaaagctgaagttgcatcgttaagaagtcccagatagcttggaggaacccgt 21208
Query: 385 gttcaagagagttctctataatcattggcaatgcagtgaagaagccaagctgtatgatga 444
| ||||| || ||||||| |||||| || | || ||||| | ||||| || ||||| |
Sbjct: 21207 gctcaagggaattctctacaatcatcggaagggcggtgaaaagtccaagttggatgataa 21148
Query: 445 actgctgatt 454
||||||||||
Sbjct: 21147 actgctgatt 21138
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 83.8 bits (42), Expect = 1e-014
Identities = 198/250 (79%)
Strand = Plus / Plus
Query: 205 tttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacggtattttgcac 264
|||| |||||||||||||||| ||||||||||||||||| || || || |||||||| |
Sbjct: 11410 tttcggcaaaactcttgtgctctacaacaaaaccacggccggtggctcgatattttgctc 11469
Query: 265 caccatgaaggattgtccggccatagtaatggctcttagttcccatggaaaatgtgtaga 324
|||| || || || ||||||||| | |||| || ||| |||||||| || |||||||
Sbjct: 11470 caccgtgcagaatagtccggccaaaaaaatgactgcgagtgcccatggagaaggtgtaga 11529
Query: 325 acacagatgaaaaattcatttgcattgtgaagaaatcccagatagcaggtaggaaacctt 384
| || ||||||| | | |||||| || ||||| ||||||||||| | ||||| || |
Sbjct: 11530 aaacggatgaaagctgaagttgcatcgttaagaagtcccagatagcttggaggaacccgt 11589
Query: 385 gttcaagagagttctctataatcattggcaatgcagtgaagaagccaagctgtatgatga 444
| ||||| || ||||||| |||||| || | || ||||| | ||||| || ||||| |
Sbjct: 11590 gctcaagggaattctctacaatcatcggaagggcggtgaaaagtccaagttggatgataa 11649
Query: 445 actgctgatt 454
||||||||||
Sbjct: 11650 actgctgatt 11659
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 61.9 bits (31), Expect = 5e-008
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 186 ctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggcca 245
|||||||| |||| || || ||||||||||||||||||| ||| |||||||| || ||
Sbjct: 554 ctagcatatagccgatagttctcagcaaaactcttgtgctccaccacaaaaccgcgacct 495
Query: 246 gtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatgg 296
|| || | ||| || |||||||||||||| || ||||| ||| || |||||
Sbjct: 494 gtggctctgtacttagcaccaccatgaagtatagtccgaccaaagaaatgg 444
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,769
Number of Sequences: 392609
Number of extensions: 140769
Number of successful extensions: 10225
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10207
Number of HSP's gapped (non-prelim): 14
length of query: 480
length of database: 441,732,993
effective HSP length: 19
effective length of query: 461
effective length of database: 434,273,422
effective search space: 200200047542
effective search space used: 200200047542
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)