BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL28h07.yg.2.1
(277 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 98 5e-019
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 90 1e-016
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 90 1e-016
gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cD... 70 1e-010
gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Me... 66 2e-009
gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower M... 64 6e-009
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 52 2e-005
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 50 1e-004
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 48 4e-004
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 48 4e-004
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 46 0.001
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 46 0.001
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 46 0.001
gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula c... 46 0.001
gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula c... 46 0.001
gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula c... 44 0.006
gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula c... 44 0.006
gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula c... 44 0.006
gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula c... 42 0.023
gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula c... 42 0.023
gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula c... 42 0.023
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 40 0.092
gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula c... 40 0.092
gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula c... 40 0.092
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.092
gb|AJ499389.1|AJ499389 AJ499389 MTGIM Medicago truncatula c... 40 0.092
gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula c... 40 0.092
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 40 0.092
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 38 0.37
gb|AJ500531.1|AJ500531 AJ500531 MTGIM Medicago truncatula c... 38 0.37
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 38 0.37
gb|AJ499637.1|AJ499637 AJ499637 MTGIM Medicago truncatula c... 38 0.37
gb|AJ499640.1|AJ499640 AJ499640 MTGIM Medicago truncatula c... 38 0.37
gb|AJ499898.1|AJ499898 AJ499898 MTGIM Medicago truncatula c... 38 0.37
gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula c... 38 0.37
gb|AJ499996.1|AJ499996 AJ499996 MTGIM Medicago truncatula c... 38 0.37
gb|AJ621874.1|AJ621874 AJ621874 Medicago truncatula J5 root... 38 0.37
emb|AJ844467.1| Medicago truncatula T-DNA integration regio... 38 0.37
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 97.6 bits (49), Expect = 5e-019
Identities = 151/185 (81%)
Strand = Plus / Plus
Query: 42 acaataagcaaaatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcga 101
||||| ||||||||||| || ||||| ||||| ||||||||||| || || || | || |
Sbjct: 61579 acaatgagcaaaatcattagctcaatacccttgacaaaatggctacgggagtaaagtcta 61638
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
|| || |||||||| || |||||||| |||||||| || || || |||| ||||||||
Sbjct: 61639 tagttgtcagcaaatttagcatggaaaaccacaaaccctcggccagtaggtctatatttt 61698
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| |||||||| |||| ||| |||| || |||||||| || |||||||| || ||||||
Sbjct: 61699 gcacctccatgaagcaacgtccttccataatagtgagtctttgtcccaagcgaaaatgtg 61758
Query: 222 aagaa 226
|||||
Sbjct: 61759 aagaa 61763
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 89.7 bits (45), Expect = 1e-016
Identities = 138/169 (81%)
Strand = Plus / Minus
Query: 63 tcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggca 122
||||| ||||| ||||| || ||||||||||| | || |||||| |||||||||||||||
Sbjct: 8462 tcaatacccttgacaaagtgacttcgcgaataaagtctataattatcagcaaacttggca 8403
Query: 123 tggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtg 182
||||| ||||||||||| | || || | |||||||| || |||||||| ||||| ||
Sbjct: 8402 tggaaaaccacaaatcctctacccgtgggtctatattttgcacctccatgaagcagtgtc 8343
Query: 183 gttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacag 231
|||| | |||||||| |||||||| || || || |||||||| ||||
Sbjct: 8342 cttccaaaatagtgagtcttggtccctagggaaaacgtgaagaatacag 8294
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 89.7 bits (45), Expect = 1e-016
Identities = 138/169 (81%)
Strand = Plus / Minus
Query: 63 tcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggca 122
||||| ||||| ||||| || ||||||||||| | || |||||| |||||||||||||||
Sbjct: 79859 tcaatacccttgacaaagtgacttcgcgaataaagtctataattatcagcaaacttggca 79800
Query: 123 tggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtg 182
||||| ||||||||||| | || || | |||||||| || |||||||| ||||| ||
Sbjct: 79799 tggaaaaccacaaatcctctacccgtgggtctatattttgcacctccatgaagcagtgtc 79740
Query: 183 gttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacag 231
|||| | |||||||| |||||||| || || || |||||||| ||||
Sbjct: 79739 cttccaaaatagtgagtcttggtccctagggaaaacgtgaagaatacag 79691
>gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cDNA clone pKV1-17D12, mRNA
sequence
Length = 617
Score = 69.9 bits (35), Expect = 1e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 101 ataattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattc 160
|||||| |||||||||||||||||||| ||||||||||| | || || | ||||||||
Sbjct: 610 ataattatcagcaaacttggcatggaaaaccacaaatcctctacccgtgggtctatattt 551
Query: 161 agctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgt 220
|| |||||||| ||||| || |||| | |||||||| |||||||| || || || ||
Sbjct: 550 tgcacctccatgaagcagtgtccttccaaaatagtgagtcttggtccctagggaaaacgt 491
Query: 221 gaagaacacag 231
|||||| ||||
Sbjct: 490 gaagaatacag 480
>gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Medicago truncatula cDNA clone
NF053H03IN 5', mRNA sequence
Length = 646
Score = 65.9 bits (33), Expect = 2e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
||||| ||||||||| || || |||||||| || || ||||| | | |||||| |||||
Sbjct: 134 aatcaccagttcaattcctttaacaaaatgactccgagaatagagcctataattatcagc 75
Query: 113 aaacttggcatggaacaccac 133
|||||||||||||||||||||
Sbjct: 74 aaacttggcatggaacaccac 54
>gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF034H03FL 5', mRNA sequence
Length = 266
Score = 63.9 bits (32), Expect = 6e-009
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 63 tcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcag-caaacttggc 121
||||| ||||| ||||| || ||||||||||| | || |||||| |||| ||||||||||
Sbjct: 76 tcaatacccttgacaaagtgacttcgcgaataaagtctataattatcaggcaaacttggc 17
Query: 122 atggaacaccacaaat 137
|||||| |||||||||
Sbjct: 16 atggaaaaccacaaat 1
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 52.0 bits (26), Expect = 2e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||||
Sbjct: 341 aagtacctgcccgggcggccgctcga 316
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 299 agtacctgcccgggcggccgctcga 323
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgctcgaa 21
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgctcgaa 314
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 297 gtacctgcccgggcggccgctcgaa 273
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgctcga 227
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||||| ||||||||||||
Sbjct: 35 aagtacctgcccggccggccgctcgaa 9
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||||| ||||||||||||
Sbjct: 531 aagtacctgcccggacggccgctcgaa 557
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
||||||||||||||||||||| |||||
Sbjct: 425 aagtacctgcccgggcggccgttcgaa 451
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||| ||||||||
Sbjct: 349 agtacctgcccgggcggncgctcgaa 374
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
mRNA sequence
Length = 527
Score = 46.1 bits (23), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcga 276
|||||||||||||||||| |||||||
Sbjct: 502 aagtacctgcccgggcggncgctcga 527
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07,
mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.006
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||| ||||||||
Sbjct: 342 gtacctgcccgggcggncgctcgaa 366
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
mRNA sequence
Length = 321
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||| ||||||||
Sbjct: 296 agtacctgcccgggcggacgctcgaa 321
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
mRNA sequence
Length = 298
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcga 276
||||||||||||||||| ||||||||
Sbjct: 26 aagtacctgcccgggcgcccgctcga 1
>gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula cDNA clone mtgmacc120002b11,
mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||| ||||||||
Sbjct: 414 gtacctgcccgggcggtcgctcgaa 438
>gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula cDNA clone mtgmacc120004c11,
mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||| ||||||||
Sbjct: 406 gtacctgcccgggcggacgctcgaa 430
>gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula cDNA clone mtgmacc120011b09,
mRNA sequence
Length = 314
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggacgctcgaa 314
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.092
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 60 agttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaa 115
||||||||| |||| ||||||||||||| | ||| | ||||| |||||||||||
Sbjct: 581 agttcaatggccttgacaaaatggcttctagcatatagccgatagttctcagcaaa 526
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05,
mRNA sequence
Length = 114
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
|||||||||||||| |||||||||
Sbjct: 24 gtacctgcccgggcagccgctcga 1
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 252 agtacctgcccgggcggccg 271
||||||||||||||||||||
Sbjct: 20 agtacctgcccgggcggccg 1
>gb|AJ499389.1|AJ499389 AJ499389 MTGIM Medicago truncatula cDNA clone mtgmacc120003e11,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.092
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 249 ataagtacctgcccgggcggccgctcga 276
|||||||||||||||||| |||||||||
Sbjct: 27 ataagtacctgcccgggc-gccgctcga 1
>gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula cDNA clone mtgmacc120004a05,
mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||| ||||
Sbjct: 24 gtacctgcccgggcggccgttcga 1
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccg 271
|||||||||||||||||||
Sbjct: 379 gtacctgcccgggcggccg 397
>gb|AJ500531.1|AJ500531 AJ500531 MTGIM Medicago truncatula cDNA clone mtgmacc120017d09,
mRNA sequence
Length = 627
Score = 38.2 bits (19), Expect = 0.37
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||| ||||||||||||||
Sbjct: 65 aagtacctgccc-ggcggccgctcgaa 40
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07,
mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccg 271
|||||||||||||||||||
Sbjct: 22 gtacctgcccgggcggccg 4
>gb|AJ499637.1|AJ499637 AJ499637 MTGIM Medicago truncatula cDNA clone mtgmacc120006f03,
mRNA sequence
Length = 535
Score = 38.2 bits (19), Expect = 0.37
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 250 taagtacctgcccgggcggccgctcga 276
||||||||||||| |||||||||||||
Sbjct: 26 taagtacctgccc-ggcggccgctcga 1
>gb|AJ499640.1|AJ499640 AJ499640 MTGIM Medicago truncatula cDNA clone mtgmacc120006f06,
mRNA sequence
Length = 476
Score = 38.2 bits (19), Expect = 0.37
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 250 taagtacctgcccgggcggccgctcga 276
||||||||||||| |||||||||||||
Sbjct: 26 taagtacctgccc-ggcggccgctcga 1
>gb|AJ499898.1|AJ499898 AJ499898 MTGIM Medicago truncatula cDNA clone mtgmacc120009h01,
mRNA sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.37
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 250 taagtacctgcccgggcggccgctcga 276
||||||||||||| |||||||||||||
Sbjct: 26 taagtacctgccc-ggcggccgctcga 1
>gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula cDNA clone mtgmacc120010c08,
mRNA sequence
Length = 463
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccg 271
|||||||||||||||||||
Sbjct: 445 gtacctgcccgggcggccg 463
>gb|AJ499996.1|AJ499996 AJ499996 MTGIM Medicago truncatula cDNA clone mtgmacc120011c04,
mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 0.37
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||| ||||||||||||||
Sbjct: 41 aagtacctgccc-ggcggccgctcgaa 16
>gb|AJ621874.1|AJ621874 AJ621874 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs890, mRNA sequence
Length = 352
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259 gcccgggcggccgctcgaa 277
|||||||||||||||||||
Sbjct: 324 gcccgggcggccgctcgaa 342
>emb|AJ844467.1| Medicago truncatula T-DNA integration region, transgenic line M3-3
Length = 3192
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 254 tacctgcccgggcggccgctcga 276
||||| |||||||||||||||||
Sbjct: 32 tacctccccgggcggccgctcga 10
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,162
Number of Sequences: 392609
Number of extensions: 82162
Number of successful extensions: 6328
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6281
Number of HSP's gapped (non-prelim): 46
length of query: 277
length of database: 441,732,993
effective HSP length: 19
effective length of query: 258
effective length of database: 434,273,422
effective search space: 112042542876
effective search space used: 112042542876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)