BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR301510.1| mte1-2K10RM1 BAC end, cultivar Jemalong A17... 46 0.004
emb|CR308299.1| mte1-29B10FM1 BAC end, cultivar Jemalong A1... 46 0.004
gb|CG931676.1|CG931676 MBECQ89TR mth2 Medicago truncatula g... 40 0.25
gb|CG934467.1|CG934467 MBELJ71TR mth2 Medicago truncatula g... 40 0.25
gb|CG942709.1|CG942709 MBEAH64TF mth2 Medicago truncatula g... 40 0.25
gb|CG945567.1|CG945567 MBEMS48TR mth2 Medicago truncatula g... 40 0.25
emb|CR954191.1| Medicago truncatula chromosome 5 clone mte1... 40 0.25
>emb|CR301510.1| mte1-2K10RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 555
Score = 46.1 bits (23), Expect = 0.004
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 148 caggaagaagtcctatcttatgcaatcttaaaatacaatctattatgttcctccatccgc 207
|||||||||| |||| ||| ||||||||||| || ||||| | || || ||||| ||
Sbjct: 534 caggaagaagacctagcttgtgcaatcttaagatgcaatcaagaatatttctccaacctg 475
Query: 208 tgcgtatgtgatcaccata 226
||||||||| |||||||||
Sbjct: 474 tgcgtatgtaatcaccata 456
>emb|CR308299.1| mte1-29B10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 729
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 453 ttatcaaaaaccacagaaacagcagcaactgttgg 487
|||||||| ||||||||||| ||||||| ||||||
Sbjct: 557 ttatcaaataccacagaaacggcagcaattgttgg 523
>gb|CG931676.1|CG931676 MBECQ89TR mth2 Medicago truncatula genomic clone 28O9, DNA sequence
Length = 770
Score = 40.1 bits (20), Expect = 0.25
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 150 ggaagaagtcctatcttatgcaatcttaaaatacaatctattatgttcctccatccgctg 209
|||||||| |||| || |||||||| || |||||||| | || |||||||| || ||
Sbjct: 572 ggaagaaggcctaagttgtgcaatctgaagatacaatcaagaatattcctccacccagtg 631
Query: 210 cgtatgtgatcaccataaacagttgctatagtgaaaacag 249
|| |||| ||||||||| | |||| |||||||||||||
Sbjct: 632 cggatgtaatcaccatacctacttgcaatagtgaaaacag 671
>gb|CG934467.1|CG934467 MBELJ71TR mth2 Medicago truncatula genomic clone 80K22, DNA
sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.25
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 150 ggaagaagtcctatcttatgcaatcttaaaatacaatctattatgttcctccatccgctg 209
|||||||| |||| || |||||||| || |||||||| | || |||||||| || ||
Sbjct: 605 ggaagaaggcctaagttgtgcaatctgaagatacaatcaagaatattcctccacccagtg 664
Query: 210 cgtatgtgatcaccataaacagttgctatagtgaaaacag 249
|| |||| ||||||||| | |||| |||||||||||||
Sbjct: 665 cggatgtaatcaccatacctacttgcaatagtgaaaacag 704
>gb|CG942709.1|CG942709 MBEAH64TF mth2 Medicago truncatula genomic clone 12L8, DNA sequence
Length = 845
Score = 40.1 bits (20), Expect = 0.25
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 150 ggaagaagtcctatcttatgcaatcttaaaatacaatctattatgttcctccatccgctg 209
|||||||| |||| || |||||||| || |||||||| | || |||||||| || ||
Sbjct: 603 ggaagaaggcctaagttgtgcaatctgaagatacaatcaagaatattcctccacccagtg 662
Query: 210 cgtatgtgatcaccataaacagttgctatagtgaaaacag 249
|| |||| ||||||||| | |||| |||||||||||||
Sbjct: 663 cggatgtaatcaccatacctacttgcaatagtgaaaacag 702
>gb|CG945567.1|CG945567 MBEMS48TR mth2 Medicago truncatula genomic clone 4H23, DNA sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.25
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 150 ggaagaagtcctatcttatgcaatcttaaaatacaatctattatgttcctccatccgctg 209
|||||||| |||| || |||||||| || |||||||| | || |||||||| || ||
Sbjct: 605 ggaagaaggcctaagttgtgcaatctgaagatacaatcaagaatattcctccacccagtg 664
Query: 210 cgtatgtgatcaccataaacagttgctatagtgaaaacag 249
|| |||| ||||||||| | |||| |||||||||||||
Sbjct: 665 cggatgtaatcaccatacctacttgcaatagtgaaaacag 704
>emb|CR954191.1| Medicago truncatula chromosome 5 clone mte1-26e13, WORKING DRAFT
SEQUENCE
Length = 94044
Score = 40.1 bits (20), Expect = 0.25
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 453 ttatcaaaaaccacagaaacagcagcaactgttggtccggccataacagaaaacatgtca 512
|||||||| |||||||||| || ||||||||||| || | ||||| || ||||| |||
Sbjct: 31139 ttatcaaataccacagaaatggctgcaactgttggaccagacataatggagaacatatca 31080
Query: 513 tgatcaag 520
| ||||||
Sbjct: 31079 taatcaag 31072
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,039
Number of Sequences: 392609
Number of extensions: 152039
Number of successful extensions: 12254
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12240
Number of HSP's gapped (non-prelim): 14
length of query: 722
length of database: 441,732,993
effective HSP length: 19
effective length of query: 703
effective length of database: 434,273,422
effective search space: 305294215666
effective search space used: 305294215666
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)