BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH2g03.yg.2.1
(537 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 72 5e-011
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 72 5e-011
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 56 3e-006
gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Med... 46 0.003
gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula c... 46 0.003
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 42 0.047
gb|AC146586.2| Medicago truncatula clone mth2-71m12, comple... 40 0.19
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 71.9 bits (36), Expect = 5e-011
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 7 gaaaagctttggagcttcaggcttttcttgatatggccaa 46
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5003 gaaaagctttggagcttcaggctttccttgatatggccaa 5042
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 135 atgaagtttacatatgttgtctcatgccaactatatgg 172
||||| || ||||||||||| |||||||||| ||||||
Sbjct: 5263 atgaaattcacatatgttgtatcatgccaacaatatgg 5300
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 71.9 bits (36), Expect = 5e-011
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 7 gaaaagctttggagcttcaggcttttcttgatatggccaa 46
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 76400 gaaaagctttggagcttcaggctttccttgatatggccaa 76439
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 135 atgaagtttacatatgttgtctcatgccaactatatgg 172
||||| || ||||||||||| |||||||||| ||||||
Sbjct: 76660 atgaaattcacatatgttgtatcatgccaacaatatgg 76697
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 7 gaaaagctttggagcttcaggcttttcttgatatggccaa 46
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 65119 gaaaagccttggagctccaggcttttctcgatatggccaa 65080
>gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Medicago truncatula cDNA clone
NF106E12ST 5', mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 474 caaactatagatatgaatcaggagcactatatggaggagncnttgaaaatgagnaatctg 533
||||| || |||||||||||||| |||||||||| || | || |||||||| ||| ||
Sbjct: 268 caaacaattgatatgaatcaggataactatatggaagaagctttcaaaatgaggaatttg 327
Query: 534 ctgc 537
||||
Sbjct: 328 ctgc 331
>gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula cDNA clone mtgmacc120016c03,
mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 474 caaactatagatatgaatcaggagcactatatggaggagncnttgaaaatgagnaatctg 533
||||| || |||||||||||||| |||||||||| || | || |||||||| ||| ||
Sbjct: 385 caaacaattgatatgaatcaggataactatatggaagaagctttcaaaatgaggaatttg 326
Query: 534 ctgc 537
||||
Sbjct: 325 ctgc 322
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 42.1 bits (21), Expect = 0.047
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaat 448
||||| |||||||||||||| | |||||||||
Sbjct: 57969 gaagggaagccagaaaaccaaaaccatgcaat 57938
>gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete sequence
Length = 109629
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 201 gcacatgatattttgagact 220
||||||||||||||||||||
Sbjct: 85426 gcacatgatattttgagact 85407
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,680
Number of Sequences: 392609
Number of extensions: 146680
Number of successful extensions: 11405
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11364
Number of HSP's gapped (non-prelim): 41
length of query: 537
length of database: 441,732,993
effective HSP length: 19
effective length of query: 518
effective length of database: 434,273,422
effective search space: 224953632596
effective search space used: 224953632596
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)