BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH10g11.yg.2.1
(632 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A1... 100 3e-019
emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A1... 100 3e-019
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 100 3e-019
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 100 3e-019
gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower M... 46 0.004
gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula c... 46 0.004
emb|CR343939.1| mte1-77E12FM1 BAC end, cultivar Jemalong A1... 44 0.014
emb|CR297227.1| mte1-14O9RM1 BAC end, cultivar Jemalong A17... 44 0.014
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 44 0.014
gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Med... 42 0.056
>emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 765
Score = 99.6 bits (50), Expect = 3e-019
Identities = 182/226 (80%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| |||||||| || |||||||| | ||| || ||||| |||||||||
Sbjct: 430 ttgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgatacca 489
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| || ||||||| | ||||| |||||||| || ||||||||||||| |||
Sbjct: 490 cctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaact 549
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| | |||| |||| ||| | ||| || || ||||| ||||||||||||||||| |||
Sbjct: 550 ttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgac 609
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttccc 230
|||||||| |||||||| || || || || ||||| | ||||||||
Sbjct: 610 atgaaccaggcaagagaggacacggagccagtgaaaatgtgttccc 655
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 275 aactcttctagtaggtttctcatctttagagcttcttcaaagtagtt 321
|||||||| || || ||||||||||| || ||||| |||||||||||
Sbjct: 701 aactcttcaaggagatttctcatcttgagtgcttcctcaaagtagtt 747
>emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 654
Score = 99.6 bits (50), Expect = 3e-019
Identities = 182/226 (80%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| |||||||| || |||||||| | ||| || ||||| |||||||||
Sbjct: 415 ttgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgatacca 474
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| || ||||||| | ||||| |||||||| || ||||||||||||| |||
Sbjct: 475 cctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaact 534
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| | |||| |||| ||| | ||| || || ||||| ||||||||||||||||| |||
Sbjct: 535 ttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgac 594
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttccc 230
|||||||| |||||||| || || || || ||||| | ||||||||
Sbjct: 595 atgaaccaggcaagagaggacacggagccagtgaaaatgtgttccc 640
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 99.6 bits (50), Expect = 3e-019
Identities = 182/226 (80%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| |||||||| || |||||||| | ||| || ||||| |||||||||
Sbjct: 20797 ttgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgatacca 20738
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| || ||||||| | ||||| |||||||| || ||||||||||||| |||
Sbjct: 20737 cctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaact 20678
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| | |||| |||| ||| | ||| || || ||||| ||||||||||||||||| |||
Sbjct: 20677 ttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgac 20618
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttccc 230
|||||||| |||||||| || || || || ||||| | ||||||||
Sbjct: 20617 atgaaccaggcaagagaggacacggagccagtgaaaatgtgttccc 20572
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 276 actcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatat 335
||||||| || || ||||||||||| || ||||| ||||||||||| || || ||||| |
Sbjct: 20526 actcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgt 20467
Query: 336 caatagt 342
| |||||
Sbjct: 20466 ctatagt 20460
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 99.6 bits (50), Expect = 3e-019
Identities = 182/226 (80%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| |||||||| || |||||||| | ||| || ||||| |||||||||
Sbjct: 12000 ttgaacccagcaaatatgtcctcgcttatgttgatcactctggaagctttgctgatacca 12059
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| || ||||||| | ||||| |||||||| || ||||||||||||| |||
Sbjct: 12060 cctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaact 12119
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| | |||| |||| ||| | ||| || || ||||| ||||||||||||||||| |||
Sbjct: 12120 ttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgac 12179
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttccc 230
|||||||| |||||||| || || || || ||||| | ||||||||
Sbjct: 12180 atgaaccaggcaagagaggacacggagccagtgaaaatgtgttccc 12225
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 276 actcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatat 335
||||||| || || ||||||||||| || ||||| ||||||||||| || || ||||| |
Sbjct: 12271 actcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgt 12330
Query: 336 caatagt 342
| |||||
Sbjct: 12331 ctatagt 12337
>gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower Medicago truncatula cDNA clone
NF051G10FL 5', mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgat 39
||||||||||||||||| || |||||||| |||||
Sbjct: 53 ttgaaaccagcaaaaatatcttcactaatattgat 19
>gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula cDNA clone mtgmacc120016c03,
mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 atcaaaaacatctgggtggccataatg 114
|||||| ||||||||||||||||||||
Sbjct: 125 atcaaatacatctgggtggccataatg 151
Score = 42.1 bits (21), Expect = 0.056
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 304 agcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgt 363
||||||||| | ||||| || || ||||||||||| ||||| | | ||||| |||||
Sbjct: 344 agcttcttccatatagttatcctgattcatatcaattgtttgcaagccttcgcctcttgt 403
Query: 364 gaagatgagtgcatgattctgattttctggctt 396
||| |||| ||||| || ||||||||||||||
Sbjct: 404 gaaaatgatggcatggttttgattttctggctt 436
>emb|CR343939.1| mte1-77E12FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||| ||||||||||||||
Sbjct: 223 gacatgaaccaggcaagagaagaaac 198
>emb|CR297227.1| mte1-14O9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 373
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||| ||||||||||||||
Sbjct: 213 gacatgaaccaggcaagagaagaaac 188
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||| ||||||||||||||
Sbjct: 63096 gacatgaaccaggcaagagaagaaac 63121
>gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Medicago truncatula cDNA clone
NF106E12ST 5', mRNA sequence
Length = 511
Score = 42.1 bits (21), Expect = 0.056
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 304 agcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgt 363
||||||||| | ||||| || || ||||||||||| ||||| | | ||||| |||||
Sbjct: 309 agcttcttccatatagttatcctgattcatatcaattgtttgcaagccttcgcctcttgt 250
Query: 364 gaagatgagtgcatgattctgattttctggctt 396
||| |||| ||||| || ||||||||||||||
Sbjct: 249 gaaaatgatggcatggttttgattttctggctt 217
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,465
Number of Sequences: 392609
Number of extensions: 195465
Number of successful extensions: 14309
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14273
Number of HSP's gapped (non-prelim): 30
length of query: 632
length of database: 441,732,993
effective HSP length: 19
effective length of query: 613
effective length of database: 434,273,422
effective search space: 266209607686
effective search space used: 266209607686
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)