BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 174 6e-042
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 155 6e-036
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 155 6e-036
gb|BF521212.1|BF521212 EST458760 DSIL Medicago truncatula c... 135 5e-030
gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Me... 135 5e-030
gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower M... 92 7e-017
gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cD... 70 3e-010
gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago tr... 64 2e-008
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 56 4e-006
gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cD... 56 4e-006
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 56 4e-006
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 54 2e-005
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 50 2e-004
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 50 2e-004
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 44 0.015
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 174 bits (88), Expect = 6e-042
Identities = 229/276 (82%)
Strand = Plus / Plus
Query: 294 aatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctcagc 353
|||||| ||||||| ||||||||||||||||| ||||| ||||||| |||||| |||||
Sbjct: 61590 aatcattagctcaatacccttgacaaaatggctacgggagtaaagtctatagttgtcagc 61649
Query: 354 aaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctccatg 413
|||||| |||||||| ||||||||||| || ||||| | ||| |||| || ||||||||
Sbjct: 61650 aaatttagcatggaaaaccacaaaccctcggccagtaggtctatattttgcacctccatg 61709
Query: 414 gagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtgaagaaaacaga 473
|| ||||||||||| || |||||||| ||||| || | ||| |||||||||||||| |
Sbjct: 61710 aagcaacgtccttccataatagtgagtctttgtcccaagcgaaaatgtgaagaaaactgg 61769
Query: 474 ggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaatcctctctccaa 533
|||||||| | |||||| | ||| || ||||| | ||||||| |||||| || |||||
Sbjct: 61770 agccaactgcaactgcattaatatgaactcactaagagcagttcggaatcccctttccaa 61829
Query: 534 accgatttccatcatcatgggcagcgccatcaaaaa 569
||||||||||| | ||| |||| |||||||||||
Sbjct: 61830 gccgatttccattaacataggcaaagccatcaaaaa 61865
Score = 111 bits (56), Expect = 8e-023
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || || |||| |||||| ||||| || || |||| |||
Sbjct: 61354 tcccaccaggattcccaactcttttcaggtggcacacctataccgcctcggatgctaatc 61413
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
|| || | |||||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 61414 catttattccaatcagtccaatcatcaacaatcttttgccactcaaacccagaaggattg 61473
Query: 178 aacaggaatggtgcaaagagccaagtgcccaccatgaaccacat 221
|||| ||| || ||| | ||||| ||||||||||| ||||||||
Sbjct: 61474 aacaagaagggagcataaagccaggtgcccaccataaaccacat 61517
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 155 bits (78), Expect = 6e-036
Identities = 408/518 (78%)
Strand = Plus / Minus
Query: 52 tctttttcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattg 111
|||| ||||||||| || ||||| ||||| || || | ||||| |||||||| || ||
Sbjct: 8714 tcttcttcccaccaagattcccaacttttttcaggcggtacacctatacctcctcggtta 8655
Query: 112 ctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaa 171
|| ||||| || | |||||||||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 8654 ctaatccatttattccaatcagtccaatcatcaacaattttttgccattcaaacccagag 8595
Query: 172 ggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatggatacggtg 231
|| ||||||| |||||| ||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 8594 gggttgaacaagaatggagcaaacagccaggttcccaccatgaaccacattgatacagta 8535
Query: 232 atgaagatgtaagttatagcccctctatatgactgaccaaatatttcatacacaactagt 291
|| || || || | | ||| | ||| ||||| |||| ||| ||||| || ||||| |||
Sbjct: 8534 atcaatatatatgcaacagcacttctgtatgaatgactaaaaatttcgtatacaacaagt 8475
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
| | || ||||||| ||||||||||| || || || |||||||||| ||| || |||
Sbjct: 8474 aataccaagagctcaatacccttgacaaagtgacttcgcgaataaagtctataattatca 8415
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| ||||||||||| |||||||| || | || |||| ||| |||| || ||||||
Sbjct: 8414 gcaaacttggcatggaaaaccacaaatcctctacccgtgggtctatattttgcacctcca 8355
Query: 412 tggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtgaagaaaaca 471
|| || | |||||||| | |||||||| || || || | || || |||||||| |||
Sbjct: 8354 tgaagcagtgtccttccaaaatagtgagtcttggtccctagggaaaacgtgaagaataca 8295
Query: 472 gaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaatcctctctcc 531
| || | ||| | ||||||||||||||| ||||| | |||||||| ||| || || |||
Sbjct: 8294 ggagcaagctgcaactgcatcagtataaattcactaagtgcagttcggaagcccctttcc 8235
Query: 532 aaaccgatttccatcatcatgggcagcgccatcaaaaa 569
|| || |||||||||| |||||||| ||||| |||||
Sbjct: 8234 aagccaatttccatcagcatgggcaaggccattaaaaa 8197
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 155 bits (78), Expect = 6e-036
Identities = 408/518 (78%)
Strand = Plus / Minus
Query: 52 tctttttcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattg 111
|||| ||||||||| || ||||| ||||| || || | ||||| |||||||| || ||
Sbjct: 80111 tcttcttcccaccaagattcccaacttttttcaggcggtacacctatacctcctcggtta 80052
Query: 112 ctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaa 171
|| ||||| || | |||||||||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 80051 ctaatccatttattccaatcagtccaatcatcaacaattttttgccattcaaacccagag 79992
Query: 172 ggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatggatacggtg 231
|| ||||||| |||||| ||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 79991 gggttgaacaagaatggagcaaacagccaggttcccaccatgaaccacattgatacagta 79932
Query: 232 atgaagatgtaagttatagcccctctatatgactgaccaaatatttcatacacaactagt 291
|| || || || | | ||| | ||| ||||| |||| ||| ||||| || ||||| |||
Sbjct: 79931 atcaatatatatgcaacagcacttctgtatgaatgactaaaaatttcgtatacaacaagt 79872
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
| | || ||||||| ||||||||||| || || || |||||||||| ||| || |||
Sbjct: 79871 aataccaagagctcaatacccttgacaaagtgacttcgcgaataaagtctataattatca 79812
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| ||||||||||| |||||||| || | || |||| ||| |||| || ||||||
Sbjct: 79811 gcaaacttggcatggaaaaccacaaatcctctacccgtgggtctatattttgcacctcca 79752
Query: 412 tggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtgaagaaaaca 471
|| || | |||||||| | |||||||| || || || | || || |||||||| |||
Sbjct: 79751 tgaagcagtgtccttccaaaatagtgagtcttggtccctagggaaaacgtgaagaataca 79692
Query: 472 gaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaatcctctctcc 531
| || | ||| | ||||||||||||||| ||||| | |||||||| ||| || || |||
Sbjct: 79691 ggagcaagctgcaactgcatcagtataaattcactaagtgcagttcggaagcccctttcc 79632
Query: 532 aaaccgatttccatcatcatgggcagcgccatcaaaaa 569
|| || |||||||||| |||||||| ||||| |||||
Sbjct: 79631 aagccaatttccatcagcatgggcaaggccattaaaaa 79594
>gb|BF521212.1|BF521212 EST458760 DSIL Medicago truncatula cDNA clone pDSIL-41P20, mRNA
sequence
Length = 342
Score = 135 bits (68), Expect = 5e-030
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 44 gctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacctc 103
|||| ||||||||||||||||| || ||||||||||| || || | ||||| |||||||
Sbjct: 286 gctcatgctctttttcccaccaggattcccagcttttttcaggaggtacaccgatacctc 227
Query: 104 cacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactcaa 163
| || ||||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||
Sbjct: 226 cgcggttgcttatccacttatgccaatctgtccaatcatcaagtatcttctgccactcaa 167
Query: 164 atccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatgg 223
|||| || |||||||| ||||| || ||||||||||| || || |||||||||| ||||
Sbjct: 166 atcccgatggattgaaaaggaaaggagcaaagagccatgtccctgccatgaaccatatgg 107
>gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Medicago truncatula cDNA clone
NF053H03IN 5', mRNA sequence
Length = 646
Score = 135 bits (68), Expect = 5e-030
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 44 gctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacctc 103
|||| ||||||||||||||||| || ||||||||||| || || | ||||| |||||||
Sbjct: 384 gctcatgctctttttcccaccaggattcccagcttttttcaggaggtacaccgatacctc 325
Query: 104 cacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactcaa 163
| || ||||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||
Sbjct: 324 cgcggttgcttatccacttatgccaatctgtccaatcatcaagtatcttctgccactcaa 265
Query: 164 atccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatgg 223
|||| || |||||||| ||||| || ||||||||||| || || |||||||||| ||||
Sbjct: 264 atcccgatggattgaaaaggaaaggagcaaagagccatgtccctgccatgaaccatatgg 205
Score = 56.0 bits (28), Expect = 4e-006
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||| || || ||||| || | ||| || |||||||| |||||||||||||||||
Sbjct: 112 acaaaatgactccgagaatagagcctataattatcagcaaacttggcatggaacaccacg 53
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttc 427
|| || || ||||| ||||||| | ||| |||||||| || || |||||||
Sbjct: 52 aaaccccgaccagtacctctgtactgcgcacctccatgaagcaatgtccttc 1
>gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF034H03FL 5', mRNA sequence
Length = 266
Score = 91.7 bits (46), Expect = 7e-017
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 126 ccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaa 185
|||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| |||
Sbjct: 256 ccaatcagtccaatcatcaacaattttttgccattcaaacccagaggggttgaacaagaa 197
Query: 186 tggtgcaaagagccaagtgcccaccatgaaccacatggatac 227
||| ||||| ||||| || ||||||||||||||||| |||||
Sbjct: 196 tggagcaaacagccaggttcccaccatgaaccacattgatac 155
Score = 50.1 bits (25), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 310 cccttgacaaaatggctgcgggaataaagtcgatagttctcag-caaatttggcatggaa 368
||||||||||| || || || |||||||||| ||| || |||| |||| |||||||||||
Sbjct: 70 cccttgacaaagtgacttcgcgaataaagtctataattatcaggcaaacttggcatggaa 11
Query: 369 caccacaaa 377
||||||||
Sbjct: 10 aaccacaaa 2
>gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cDNA clone pKV1-17D12, mRNA
sequence
Length = 617
Score = 69.9 bits (35), Expect = 3e-010
Identities = 185/235 (78%)
Strand = Plus / Minus
Query: 335 aaagtcgatagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctc 394
|||||| ||| || |||||||| ||||||||||| |||||||| || | || |||| ||
Sbjct: 617 aaagtctataattatcagcaaacttggcatggaaaaccacaaatcctctacccgtgggtc 558
Query: 395 tgtattccgctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacg 454
| |||| || |||||||| || | |||||||| | |||||||| || || || | |
Sbjct: 557 tatattttgcacctccatgaagcagtgtccttccaaaatagtgagtcttggtccctaggg 498
Query: 455 agaatgtgaagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcag 514
| || |||||||| |||| || | ||| | ||||||||||||||| ||||| | |||||
Sbjct: 497 aaaacgtgaagaatacaggagcaagctgcaactgcatcagtataaattcactaagtgcag 438
Query: 515 ttctgaatcctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaa 569
||| ||| || || ||||| || |||||||||| |||||||| ||||| |||||
Sbjct: 437 ttcggaagcccctttccaagccaatttccatcagcatgggcaaggccattaaaaa 383
>gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago truncatula cDNA clone NF069A09DT
5', mRNA sequence
Length = 668
Score = 63.9 bits (32), Expect = 2e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 486 ctgcatcagtataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccat 545
||||||||||||||| ||||| | |||||||| ||| || || ||||| || ||||||||
Sbjct: 613 ctgcatcagtataaattcactaagtgcagttcggaagcccctttccaagccaatttccat 554
Query: 546 catcatgggcagcgccatcaaaaa 569
|| |||||||| ||||| |||||
Sbjct: 553 cagcatgggcaaggccattaaaaa 530
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcat 491
|||||||| |||||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct: 636 tgagttttagttcccaaagagaatgtgaagaagacagaacacaactgaagttgcat 581
>gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cDNA clone pKV1-14L2, mRNA
sequence
Length = 364
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcat 491
|||||||| |||||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct: 360 tgagttttagttcccaaagagaatgtgaagaagacagaacacaactgaagttgcat 305
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcat 491
|||||||| |||||||| |||||||||||||| ||||| ||||||||| |||||
Sbjct: 660 tgagttttagttcccaaagagaatgtgaagaagacagaacacaactgaagttgcat 605
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 511 gcagttctgaatcctctctccaaaccgatttccatcatcatgggcag 557
|||||||||||||||||||| | || |||||||| |||||||||||
Sbjct: 55963 gcagttctgaatcctctctctagtccaatttccatgatcatgggcag 56009
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 atcttctgccactcaaatccagaaggattgaacaggaa 185
|||||||||||||||||||| || ||||| || |||||
Sbjct: 55600 atcttctgccactcaaatcccgatggattaaaaaggaa 55637
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 50.1 bits (25), Expect = 2e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||||||||| || | || | ||||||||| ||||| || | |||
Sbjct: 96836 tcccaccaagattcccagcttttatcagatggaataccaataccaccacggtttcccatc 96895
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||| | ||||||| |||| |||||||| | || ||||| ||||| || |||||||||
Sbjct: 96896 caccgcttccaatcactccaatcatccaccgttttttgccaatcaaaacctgaaggattg 96955
Query: 178 aacaggaatggtgcaaa 194
|||| |||||| |||||
Sbjct: 96956 aacaagaatggagcaaa 96972
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 50.1 bits (25), Expect = 2e-004
Identities = 109/137 (79%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||||||||| || | || | ||||||||| ||||| || | |||
Sbjct: 76998 tcccaccaagattcccagcttttatcagatggaataccaataccaccacggtttcccatc 76939
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||| | ||||||| |||| |||||||| | || ||||| ||||| || |||||||||
Sbjct: 76938 caccgcttccaatcactccaatcatccaccgttttttgccaatcaaaacctgaaggattg 76879
Query: 178 aacaggaatggtgcaaa 194
|||| |||||| |||||
Sbjct: 76878 aacaagaatggagcaaa 76862
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.015
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 311 ccttgacaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
|||||||||||||||| | | ||| || |||||||||||||||||
Sbjct: 571 ccttgacaaaatggcttctagcatatagccgatagttctcagcaaa 526
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,041
Number of Sequences: 392609
Number of extensions: 139041
Number of successful extensions: 10689
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10653
Number of HSP's gapped (non-prelim): 35
length of query: 690
length of database: 441,732,993
effective HSP length: 19
effective length of query: 671
effective length of database: 434,273,422
effective search space: 291397466162
effective search space used: 291397466162
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)