BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Med... 161 1e-037
gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula c... 161 1e-037
gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago tr... 84 2e-014
gb|CB893638.1|CB893638 EST646430 HOGA Medicago truncatula c... 74 2e-011
emb|CR343939.1| mte1-77E12FM1 BAC end, cultivar Jemalong A1... 64 2e-008
emb|CR297227.1| mte1-14O9RM1 BAC end, cultivar Jemalong A17... 64 2e-008
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 64 2e-008
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 62 7e-008
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 62 7e-008
gb|CB893388.1|CB893388 EST646180 HOGA Medicago truncatula c... 54 2e-005
emb|CR322977.1| mte1-5H7RM1 BAC end, cultivar Jemalong A17 ... 52 7e-005
emb|CR318117.1| mte1-43G7RM1 BAC end, cultivar Jemalong A17... 52 7e-005
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 52 7e-005
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 52 7e-005
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 48 0.001
gb|CG921243.1|CG921243 MBENQ65TF mth2 Medicago truncatula g... 44 0.017
gb|CG970945.1|CG970945 MBENK43TF mth2 Medicago truncatula g... 44 0.017
emb|CR493578.1| mth2-167N14FM1 BAC end, cultivar Jemalong A... 44 0.017
gb|CG928497.1|CG928497 MBEJG66TF mth2 Medicago truncatula g... 42 0.067
emb|CR496523.1| mth2-172K11FM2 BAC end, cultivar Jemalong A... 42 0.067
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.067
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 42 0.067
emb|CR969224.1| mth4-25O20FM1 BAC end, cultivar Jemalong A1... 40 0.26
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.26
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.26
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.26
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.26
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 40 0.26
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.26
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.26
gb|AC146586.2| Medicago truncatula clone mth2-71m12, comple... 40 0.26
emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2... 40 0.26
>gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Medicago truncatula cDNA clone
NF106E12ST 5', mRNA sequence
Length = 511
Score = 161 bits (81), Expect = 1e-037
Identities = 218/263 (82%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 201 tgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacaca 260
||||||||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| |||
Sbjct: 467 tgtccaattgtcacaaaactggtttcctgattggacataaaccatgcaagcgatgaaaca 408
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactcca---tgt 317
||||| ||||| || || ||||||| |||||| || | ||||||||| ||| |||
Sbjct: 407 ctgccagtaaaaatatgctctctgagtccaagtatagttggatatctggggccaccgtgt 348
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
||||| ||| |||||||||| ||| |||||||| ||||| || |||||||||| |||
Sbjct: 347 ttcttaagaaattcttgcagcaaattcctcattttgaaagcttcttccatatagttatcc 288
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
||||||||||| || ||||| | || ||||||||| ||||| || || |||||||| |||
Sbjct: 287 tgattcatatcaattgtttgcaagccttcgcctcttgtgaaaatgatggcatggttttga 228
Query: 438 ttttctggctttccttcacctaa 460
||||||||||| || ||||||||
Sbjct: 227 ttttctggcttcccctcacctaa 205
>gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula cDNA clone mtgmacc120016c03,
mRNA sequence
Length = 581
Score = 161 bits (81), Expect = 1e-037
Identities = 218/263 (82%), Gaps = 3/263 (1%)
Strand = Plus / Plus
Query: 201 tgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacaca 260
||||||||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| |||
Sbjct: 186 tgtccaattgtcacaaaactggtttcctgattggacataaaccatgcaagcgatgaaaca 245
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactcca---tgt 317
||||| ||||| || || ||||||| |||||| || | ||||||||| ||| |||
Sbjct: 246 ctgccagtaaaaatatgctctctgagtccaagtatagttggatatctggggccaccgtgt 305
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
||||| ||| |||||||||| ||| |||||||| ||||| || |||||||||| |||
Sbjct: 306 ttcttaagaaattcttgcagcaaattcctcattttgaaagcttcttccatatagttatcc 365
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
||||||||||| || ||||| | || ||||||||| ||||| || || |||||||| |||
Sbjct: 366 tgattcatatcaattgtttgcaagccttcgcctcttgtgaaaatgatggcatggttttga 425
Query: 438 ttttctggctttccttcacctaa 460
||||||||||| || ||||||||
Sbjct: 426 ttttctggcttcccctcacctaa 448
Score = 56.0 bits (28), Expect = 4e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 16 ggtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgt 75
||||||| || ||||| ||||| |||||||| || || |||||||| ||||||||||| |
Sbjct: 1 ggtactcatgatgagtgacatttccttcacgtaaagtagaattgaaacctgcaaatatat 60
Query: 76 cctc 79
||||
Sbjct: 61 cctc 64
>gb|BF636038.1|BF636038 NF069A09DT1F1068 Drought Medicago truncatula cDNA clone NF069A09DT
5', mRNA sequence
Length = 668
Score = 83.8 bits (42), Expect = 2e-014
Identities = 141/174 (81%)
Strand = Plus / Minus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtc 76
|||||| || ||||||||| | |||||||| | ||| || ||||| || ||||| || ||
Sbjct: 196 gtactcatgatgagtaacacttccttcacggagtgtagagttgaagccagcaaaaatatc 137
Query: 77 ctcactgagattgataattttggatgctttactcacaccacccctcgtaatgtggaaaag 136
||||| |||||||||| ||||| |||||||| ||||| || || || | ||| |||||
Sbjct: 136 ttcacttagattgataaccttggaggctttactgacaccccctcttgtcaggtgaaaaag 77
Query: 137 gcgatcgaagatatcaggatgaccataatgaaaacgaaccctcaacggattggc 190
| ||| |||| ||||||||| ||||| || ||||||||||||| ||||||||
Sbjct: 76 cctatcaaagacatcaggatgcccatagtggaaacgaaccctcaggggattggc 23
>gb|CB893638.1|CB893638 EST646430 HOGA Medicago truncatula cDNA clone HOGA-28F5, mRNA
sequence
Length = 841
Score = 73.8 bits (37), Expect = 2e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
||||| ||||||||||||||||| || ||| | || ||||| || | |||||||| |||
Sbjct: 835 atatctggatgaccataatgaaatcggacctttaaaggatttgccaaaactcgttggcca 776
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgccc 266
|| || || || || || ||||| |||||||| ||||| ||||||||||| ||||| ||
Sbjct: 775 atggtcacaaagctggtctcctggtttgacataaaccaagcaagggatgaaacacttccg 716
Query: 267 gtaaatatgtgttctct 283
|||||||| || |||||
Sbjct: 715 gtaaatatatgctctct 699
>emb|CR343939.1| mte1-77E12FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 710
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactg 263
|||||||| || ||||| ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 253 ccaattgtcacaaaactggtttcctgatttgacatgaaccaggcaagagaagaaacactg 194
>emb|CR297227.1| mte1-14O9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 373
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactg 263
|||||||| || ||||| ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 243 ccaattgtcacaaaactggtttcctgatttgacatgaaccaggcaagagaagaaacactg 184
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactg 263
|||||||| || ||||| ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 63066 ccaattgtcacaaaactggtttcctgatttgacatgaaccaggcaagagaagaaacactg 63125
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctccat 367
|||||||||||||| |||||||||||||| || |||||
Sbjct: 63308 tcttgcagcagattcctcattttcaaagcttcttccat 63345
Score = 40.1 bits (20), Expect = 0.26
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||||||||| ||||| | || ||| || | ||||| ||||| ||||| ||||
Sbjct: 63430 cctggttcatatctattgtttgcaagccttctccgcgtgtgaacattatggcatgattct 63489
Query: 436 gattttctggctttccttcacctaaaat 463
||||||| || || || ||||| |||||
Sbjct: 63490 gattttcaggtttaccctcacccaaaat 63517
Score = 40.1 bits (20), Expect = 0.26
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgcaaata 72
|||||| || ||||||||||| |||||||| | || ||||| || ||||||||||
Sbjct: 62288 gtactcatgatgagtaacatttccttcacgaagggtagaattaaaccctgcaaata 62343
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 61.9 bits (31), Expect = 7e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacact 262
|||||||| |||||||| || || ||||||||||| |||||||||||||| || |||||
Sbjct: 7096 ccaattgtcacgaaacttgtctcttgatttgacataaaccatgcaagggaagaaacact 7038
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 78 tcactgagattgataattttggatgctttactcacaccacccctcgtaatgtggaaaagg 137
||||| |||||||||| ||||| |||||||| ||||| || || || | ||| |||||
Sbjct: 7444 tcacttagattgataaccttggaggctttactgacaccccctcttgtcaggtgaaaaagc 7385
Query: 138 cgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||| |||| ||||||||| ||||| || |||||||||||
Sbjct: 7384 ctatcaaagacatcaggatgcccatagtggaaacgaaccct 7344
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 414 gtgaatattattgcatggttctgattttctggctttccttcacctaaaatggcattacct 473
||||| ||||| || || || |||||||| ||||| || ||||||||||| || |||
Sbjct: 6723 gtgaaaattatggcgtgattttgattttcgggcttaccctcacctaaaatcgctggacca 6664
Query: 474 ggtagctttatcttgtagatgacctgatcaag 505
|| |||||||| || || ||||||||||||||
Sbjct: 6663 ggaagctttattttatatatgacctgatcaag 6632
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 61.9 bits (31), Expect = 7e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacact 262
|||||||| |||||||| || || ||||||||||| |||||||||||||| || |||||
Sbjct: 78493 ccaattgtcacgaaacttgtctcttgatttgacataaaccatgcaagggaagaaacact 78435
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 78 tcactgagattgataattttggatgctttactcacaccacccctcgtaatgtggaaaagg 137
||||| |||||||||| ||||| |||||||| ||||| || || || | ||| |||||
Sbjct: 78841 tcacttagattgataaccttggaggctttactgacaccccctcttgtcaggtgaaaaagc 78782
Query: 138 cgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||| |||| ||||||||| ||||| || |||||||||||
Sbjct: 78781 ctatcaaagacatcaggatgcccatagtggaaacgaaccct 78741
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 414 gtgaatattattgcatggttctgattttctggctttccttcacctaaaatggcattacct 473
||||| ||||| || || || |||||||| ||||| || ||||||||||| || |||
Sbjct: 78120 gtgaaaattatggcgtgattttgattttcgggcttaccctcacctaaaatcgctggacca 78061
Query: 474 ggtagctttatcttgtagatgacctgatcaag 505
|| |||||||| || || ||||||||||||||
Sbjct: 78060 ggaagctttattttatatatgacctgatcaag 78029
>gb|CB893388.1|CB893388 EST646180 HOGA Medicago truncatula cDNA clone HOGA-27P9, mRNA
sequence
Length = 512
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaagggatgacacactgcccgtaaatatgtgttctct 283
||||| |||||||| ||||| ||||||||||| ||||| || |||||||| || |||||
Sbjct: 512 tcctggtttgacataaaccaagcaagggatgaaacacttccggtaaatatatgctctct 454
>emb|CR322977.1| mte1-5H7RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 636
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggat 254
|||||||| ||||| || || || || || ||||| |||||||| ||||| |||||||||
Sbjct: 270 actcgttggccaatggtcacaaagctggtctcctggtttgacataaaccaagcaagggat 211
Query: 255 gacacactgc 264
|| |||||||
Sbjct: 210 gaaacactgc 201
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 147 atatcaggatgaccataatgaaaacgaaccct 178
||||| ||||||||||||||||| || |||||
Sbjct: 463 atatctggatgaccataatgaaatcggaccct 432
>emb|CR318117.1| mte1-43G7RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 618
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggat 254
|||||||| ||||| || || || || || ||||| |||||||| ||||| |||||||||
Sbjct: 270 actcgttggccaatggtcacaaagctggtctcctggtttgacataaaccaagcaagggat 211
Query: 255 gacacactgc 264
|| |||||||
Sbjct: 210 gaaacactgc 201
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 147 atatcaggatgaccataatgaaaacgaaccct 178
||||| ||||||||||||||||| || |||||
Sbjct: 463 atatctggatgaccataatgaaatcggaccct 432
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggat 254
|||||||| ||||| || || || || || ||||| |||||||| ||||| |||||||||
Sbjct: 98481 actcgttggccaatggtcacaaagctggtctcctggtttgacataaaccaagcaagggat 98540
Query: 255 gacacactgc 264
|| |||||||
Sbjct: 98541 gaaacactgc 98550
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 147 atatcaggatgaccataatgaaaacgaaccct 178
||||| ||||||||||||||||| || |||||
Sbjct: 98288 atatctggatgaccataatgaaatcggaccct 98319
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggat 254
|||||||| ||||| || || || || || ||||| |||||||| ||||| |||||||||
Sbjct: 75353 actcgttggccaatggtcacaaagctggtctcctggtttgacataaaccaagcaagggat 75294
Query: 255 gacacactgc 264
|| |||||||
Sbjct: 75293 gaaacactgc 75284
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 147 atatcaggatgaccataatgaaaacgaaccct 178
||||| ||||||||||||||||| || |||||
Sbjct: 75546 atatctggatgaccataatgaaatcggaccct 75515
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaacca 244
||||| |||| ||| |||||||| || || |||||||| ||||||||||| |||||
Sbjct: 57513 gcaagaactctttgaccaattgtgacaaagctagtttcttgatttgacataaacca 57568
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 attgcatggttctgattttctggctttccttcacctaa 460
||||||||||| || ||||||||||| ||||| |||||
Sbjct: 57938 attgcatggttttggttttctggcttcccttctcctaa 57975
>gb|CG921243.1|CG921243 MBENQ65TF mth2 Medicago truncatula genomic clone 10K9, DNA sequence
Length = 903
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 312 ccatgtttcttctcaaactctt 333
||||||||||||||||||||||
Sbjct: 546 ccatgtttcttctcaaactctt 525
>gb|CG970945.1|CG970945 MBENK43TF mth2 Medicago truncatula genomic clone 8H13, DNA sequence
Length = 867
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 312 ccatgtttcttctcaaactctt 333
||||||||||||||||||||||
Sbjct: 325 ccatgtttcttctcaaactctt 304
>emb|CR493578.1| mth2-167N14FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 312 ccatgtttcttctcaaactctt 333
||||||||||||||||||||||
Sbjct: 325 ccatgtttcttctcaaactctt 304
>gb|CG928497.1|CG928497 MBEJG66TF mth2 Medicago truncatula genomic clone 67L11, DNA
sequence
Length = 935
Score = 42.1 bits (21), Expect = 0.067
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 408 cctctggtgaatattattgcatggttctgattttctggctttccttcacctaa 460
|||||||| || || ||||||||||| |||||||| || || ||||| |||||
Sbjct: 162 cctctggtaaaaataattgcatggttttgattttcaggtttcccttctcctaa 214
>emb|CR496523.1| mth2-172K11FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 498
Score = 42.1 bits (21), Expect = 0.067
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 408 cctctggtgaatattattgcatggttctgattttctggctttccttcacctaa 460
|||||||| || || ||||||||||| |||||||| || || ||||| |||||
Sbjct: 382 cctctggtaaaaataattgcatggttttgattttcaggtttcccttctcctaa 434
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtact 299
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtact 340
>emb|CR969224.1| mth4-25O20FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 787
Score = 40.1 bits (20), Expect = 0.26
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||||||||| ||||| | || ||| || | ||||| ||||| ||||| ||||
Sbjct: 97 cctggttcatatctattgtttgcaagccttctccgcgtgtgaacattatggcatgattct 156
Query: 436 gattttctggctttccttcacctaaaat 463
||||||| || || || ||||| |||||
Sbjct: 157 gattttcaggtttaccctcacccaaaat 184
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 1 cggccgcccgggcaggtact 20
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 445 cggccgcccgggcaggtact 426
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
>gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete sequence
Length = 109629
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 651 agtctcaaaatatcatgtgc 670
||||||||||||||||||||
Sbjct: 85407 agtctcaaaatatcatgtgc 85426
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE
Length = 120299
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 318 ttcttctcaaactcttgcag 337
||||||||||||||||||||
Sbjct: 89691 ttcttctcaaactcttgcag 89672
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184,407
Number of Sequences: 392609
Number of extensions: 184407
Number of successful extensions: 14462
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14356
Number of HSP's gapped (non-prelim): 105
length of query: 755
length of database: 441,732,993
effective HSP length: 20
effective length of query: 735
effective length of database: 433,880,813
effective search space: 318902397555
effective search space used: 318902397555
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)