BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 46 0.004
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 46 0.004
gb|AC161569.5| Medicago truncatula clone mth2-32c24, WORKIN... 42 0.056
emb|CR300704.1| mte1-19M17RM1 BAC end, cultivar Jemalong A1... 40 0.22
gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.22
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.22
emb|CR932040.1| Medicago truncatula chromosome 5 clone mth2... 40 0.22
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 613 aaaagtacctgcccgggcggccg 635
|||||||||||||||||||||||
Sbjct: 423 aaaagtacctgcccgggcggccg 445
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 613 aaaagtacctgcccgggcggccg 635
|||||||||||||||||||||||
Sbjct: 343 aaaagtacctgcccgggcggccg 321
>gb|AC161569.5| Medicago truncatula clone mth2-32c24, WORKING DRAFT SEQUENCE, 16
ordered pieces
Length = 121190
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 501 caaacatgccaaaaaatgttg 521
|||||||||||||||||||||
Sbjct: 59690 caaacatgccaaaaaatgttg 59670
>emb|CR300704.1| mte1-19M17RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 451 ggttgcctcaaaagaaaagtggaa 474
|||||||| |||||||||||||||
Sbjct: 119 ggttgcctaaaaagaaaagtggaa 142
>gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula cDNA clone mtgmacc120011f04,
mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 613 aaaagtacctgcccgggcgg 632
||||||||||||||||||||
Sbjct: 247 aaaagtacctgcccgggcgg 266
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccga 636
||||||||||||||||||||
Sbjct: 379 gtacctgcccgggcggccga 398
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 616 agtacctgcccgggcggccg 635
||||||||||||||||||||
Sbjct: 299 agtacctgcccgggcggccg 318
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 616 agtacctgcccgggcggccg 635
||||||||||||||||||||
Sbjct: 20 agtacctgcccgggcggccg 1
>emb|CR932040.1| Medicago truncatula chromosome 5 clone mth2-55h1, WORKING DRAFT
SEQUENCE
Length = 123931
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 291 ttgaacaagatattacaaat 310
||||||||||||||||||||
Sbjct: 56095 ttgaacaagatattacaaat 56114
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 214,972
Number of Sequences: 392609
Number of extensions: 214972
Number of successful extensions: 17233
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17212
Number of HSP's gapped (non-prelim): 21
length of query: 636
length of database: 441,732,993
effective HSP length: 19
effective length of query: 617
effective length of database: 434,273,422
effective search space: 267946701374
effective search space used: 267946701374
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)