BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE998469.1|BE998469 EST430192 GVSN Medicago truncatula c... 46 0.002
gb|AA661041.1|AA661041 00938 MtRHE Medicago truncatula cDNA... 44 0.007
gb|AW257512.1|AW257512 EST305649 KV2 Medicago truncatula cD... 44 0.007
gb|AW686063.1|AW686063 NF037H06NR1F1000 Nodulated root Medi... 44 0.007
gb|AW208273.2|AW208273 M110930e GVSN Medicago truncatula cD... 44 0.007
gb|BE203570.1|BE203570 EST396246 KV0 Medicago truncatula cD... 44 0.007
gb|BE203416.1|BE203416 EST403438 KV1 Medicago truncatula cD... 44 0.007
gb|AL371245.1|AL371245 MtBA42G10F1 MtBA Medicago truncatula... 44 0.007
gb|AL373865.1|AL373865 MtBB03C08F1 MtBB Medicago truncatula... 44 0.007
gb|BE997844.1|BE997844 EST429567 GVSN Medicago truncatula c... 44 0.007
gb|BE999499.1|BE999499 EST431222 GVSN Medicago truncatula c... 44 0.007
gb|BE999560.1|BE999560 EST431283 GVSN Medicago truncatula c... 44 0.007
gb|BE999871.1|BE999871 EST431594 GVSN Medicago truncatula c... 44 0.007
gb|BF634833.1|BF634833 NF070C10DT1F1081 Drought Medicago tr... 44 0.007
gb|BF650766.1|BF650766 NF100A07EC1F1051 Elicited cell cultu... 44 0.007
gb|AW691404.2|AW691404 NF041A02ST1F1000 Developing stem Med... 44 0.007
gb|BG580357.1|BG580357 EST482082 GVN Medicago truncatula cD... 44 0.007
gb|BG580619.1|BG580619 EST482346 GVN Medicago truncatula cD... 44 0.007
gb|BG580888.1|BG580888 EST482617 GVN Medicago truncatula cD... 44 0.007
gb|BG581612.1|BG581612 EST483347 GVN Medicago truncatula cD... 44 0.007
gb|BG582007.1|BG582007 EST483744 GVN Medicago truncatula cD... 44 0.007
gb|BG582419.1|BG582419 EST484163 GVN Medicago truncatula cD... 44 0.007
gb|BG583279.1|BG583279 EST485030 GVN Medicago truncatula cD... 44 0.007
gb|BG583290.1|BG583290 EST485041 GVN Medicago truncatula cD... 44 0.007
gb|BG583534.1|BG583534 EST485286 GVN Medicago truncatula cD... 44 0.007
gb|BG583777.1|BG583777 EST485532 GVN Medicago truncatula cD... 44 0.007
gb|BG646876.1|BG646876 EST508495 HOGA Medicago truncatula c... 44 0.007
gb|BG647295.1|BG647295 EST508914 HOGA Medicago truncatula c... 44 0.007
gb|BG648000.1|BG648000 EST509619 HOGA Medicago truncatula c... 44 0.007
gb|CA917502.1|CA917502 EST641649 GPOD Medicago truncatula c... 44 0.007
gb|CA917590.1|CA917590 EST641737 GPOD Medicago truncatula c... 44 0.007
gb|CA918175.1|CA918175 EST642322 GPOD Medicago truncatula c... 44 0.007
gb|CB892613.1|CB892613 EST645405 HOGA Medicago truncatula c... 44 0.007
gb|CB893069.1|CB893069 EST645861 HOGA Medicago truncatula c... 44 0.007
gb|CX529156.1|CX529156 s13dNF42F03MJ027_244370 Methyl Jasmo... 44 0.007
gb|CX535482.1|CX535482 s13dNF86H10MJ092_389133 Methyl Jasmo... 44 0.007
emb|AJ131943.1|MTR131943 Medicago truncatula mRNA for sucro... 44 0.007
gb|BG580989.1|BG580989 EST482718 GVN Medicago truncatula cD... 42 0.027
emb|CR305453.1| mte1-25I7FM1 BAC end, cultivar Jemalong A17... 40 0.11
gb|BF647979.1|BF647979 NF041A03EC1F1020 Elicited cell cultu... 40 0.11
gb|AW775243.1|AW775243 EST331965 GVN Medicago truncatula cD... 38 0.42
>gb|BE998469.1|BE998469 EST430192 GVSN Medicago truncatula cDNA clone pGVSN-12E7, mRNA
sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgcc 261
||||||||||||||||| |||||||||
Sbjct: 124 gtcactcagtgtaccattgctcatgcc 150
>gb|AA661041.1|AA661041 00938 MtRHE Medicago truncatula cDNA 5' similar to sucrose
synthase, mRNA sequence
Length = 692
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 342 gtcactcagtgtaccattgctcatgc 367
>gb|AW257512.1|AW257512 EST305649 KV2 Medicago truncatula cDNA clone KV2-10G5, mRNA
sequence
Length = 526
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 123 gtcactcagtgtaccattgctcatgc 148
>gb|AW686063.1|AW686063 NF037H06NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF037H06NR 5', mRNA sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 581 gtcactcagtgtaccattgctcatgc 606
>gb|AW208273.2|AW208273 M110930e GVSN Medicago truncatula cDNA clone SN239, mRNA sequence
Length = 302
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 39 gtcactcagtgtaccattgctcatgc 64
>gb|BE203570.1|BE203570 EST396246 KV0 Medicago truncatula cDNA clone pKV0-10H11, mRNA
sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 374 gtcactcagtgtaccattgctcatgc 399
>gb|BE203416.1|BE203416 EST403438 KV1 Medicago truncatula cDNA clone pKV1-5M24, mRNA
sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 227 gtcactcagtgtaccattgctcatgc 252
>gb|AL371245.1|AL371245 MtBA42G10F1 MtBA Medicago truncatula cDNA clone MtBA42G10 T3, mRNA
sequence
Length = 451
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 280 gtcactcagtgtaccattgctcatgc 305
>gb|AL373865.1|AL373865 MtBB03C08F1 MtBB Medicago truncatula cDNA clone MtBB03C08 T3, mRNA
sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 149 gtcactcagtgtaccattgctcatgc 174
>gb|BE997844.1|BE997844 EST429567 GVSN Medicago truncatula cDNA clone pGVSN-8I13, mRNA
sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 145 gtcactcagtgtaccattgctcatgc 170
>gb|BE999499.1|BE999499 EST431222 GVSN Medicago truncatula cDNA clone pGVSN-16N7, mRNA
sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 421 gtcactcagtgtaccattgctcatgc 446
>gb|BE999560.1|BE999560 EST431283 GVSN Medicago truncatula cDNA clone pGVSN-16J20, mRNA
sequence
Length = 466
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 290 gtcactcagtgtaccattgctcatgc 315
>gb|BE999871.1|BE999871 EST431594 GVSN Medicago truncatula cDNA clone pGVSN-24F16, mRNA
sequence
Length = 598
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 17 gtcactcagtgtaccattgctcatgc 42
>gb|BF634833.1|BF634833 NF070C10DT1F1081 Drought Medicago truncatula cDNA clone NF070C10DT
5', mRNA sequence
Length = 474
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 448 gtcactcagtgtaccattgctcatgc 473
>gb|BF650766.1|BF650766 NF100A07EC1F1051 Elicited cell culture Medicago truncatula cDNA
clone NF100A07EC 5', mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 289 gtcactcagtgtaccattgctcatgc 314
>gb|AW691404.2|AW691404 NF041A02ST1F1000 Developing stem Medicago truncatula cDNA clone
NF041A02ST 5', mRNA sequence
Length = 624
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 368 gtcactcagtgtaccattgctcatgc 393
>gb|BG580357.1|BG580357 EST482082 GVN Medicago truncatula cDNA clone pGVN-39J23 5' end,
mRNA sequence
Length = 333
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 25 gtcactcagtgtaccattgctcatgc 50
>gb|BG580619.1|BG580619 EST482346 GVN Medicago truncatula cDNA clone pGVN-61G9 5' end, mRNA
sequence
Length = 652
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 115 gtcactcagtgtaccattgctcatgc 140
>gb|BG580888.1|BG580888 EST482617 GVN Medicago truncatula cDNA clone pGVN-62L6 5' end, mRNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 99 gtcactcagtgtaccattgctcatgc 124
>gb|BG581612.1|BG581612 EST483347 GVN Medicago truncatula cDNA clone pGVN-65I10 5' end,
mRNA sequence
Length = 782
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 103 gtcactcagtgtaccattgctcatgc 128
>gb|BG582007.1|BG582007 EST483744 GVN Medicago truncatula cDNA clone pGVN-66O18 5' end,
mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 396 gtcactcagtgtaccattgctcatgc 421
>gb|BG582419.1|BG582419 EST484163 GVN Medicago truncatula cDNA clone pGVN-69J15 5' end,
mRNA sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 471 gtcactcagtgtaccattgctcatgc 496
>gb|BG583279.1|BG583279 EST485030 GVN Medicago truncatula cDNA clone pGVN-72O19 5' end,
mRNA sequence
Length = 785
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 145 gtcactcagtgtaccattgctcatgc 170
>gb|BG583290.1|BG583290 EST485041 GVN Medicago truncatula cDNA clone pGVN-72A22 5' end,
mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 43 gtcactcagtgtaccattgctcatgc 68
>gb|BG583534.1|BG583534 EST485286 GVN Medicago truncatula cDNA clone pGVN-73J11 5' end,
mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 483 gtcactcagtgtaccattgctcatgc 508
>gb|BG583777.1|BG583777 EST485532 GVN Medicago truncatula cDNA clone pGVN-74O22 5' end,
mRNA sequence
Length = 719
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 196 gtcactcagtgtaccattgctcatgc 221
>gb|BG646876.1|BG646876 EST508495 HOGA Medicago truncatula cDNA clone pHOGA-15E17 5' end,
mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 444 gtcactcagtgtaccattgctcatgc 469
>gb|BG647295.1|BG647295 EST508914 HOGA Medicago truncatula cDNA clone pHOGA-16B7 5' end,
mRNA sequence
Length = 778
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 561 gtcactcagtgtaccattgctcatgc 586
>gb|BG648000.1|BG648000 EST509619 HOGA Medicago truncatula cDNA clone pHOGA-18D7 5' end,
mRNA sequence
Length = 525
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 137 gtcactcagtgtaccattgctcatgc 162
>gb|CA917502.1|CA917502 EST641649 GPOD Medicago truncatula cDNA clone GPOD-36I18, mRNA
sequence
Length = 806
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 299 gtcactcagtgtaccattgctcatgc 324
>gb|CA917590.1|CA917590 EST641737 GPOD Medicago truncatula cDNA clone GPOD-36N7, mRNA
sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 488 gtcactcagtgtaccattgctcatgc 513
>gb|CA918175.1|CA918175 EST642322 GPOD Medicago truncatula cDNA clone GPOD-38B11, mRNA
sequence
Length = 824
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 722 gtcactcagtgtaccattgctcatgc 747
>gb|CB892613.1|CB892613 EST645405 HOGA Medicago truncatula cDNA clone HOGA-19C4, mRNA
sequence
Length = 776
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 431 gtcactcagtgtaccattgctcatgc 456
>gb|CB893069.1|CB893069 EST645861 HOGA Medicago truncatula cDNA clone HOGA-26N17, mRNA
sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 284 gtcactcagtgtaccattgctcatgc 309
>gb|CX529156.1|CX529156 s13dNF42F03MJ027_244370 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 155 gtcactcagtgtaccattgctcatgc 180
>gb|CX535482.1|CX535482 s13dNF86H10MJ092_389133 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 438 gtcactcagtgtaccattgctcatgc 463
>emb|AJ131943.1|MTR131943 Medicago truncatula mRNA for sucrose synthase
Length = 2728
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 1327 gtcactcagtgtaccattgctcatgc 1352
>gb|BG580989.1|BG580989 EST482718 GVN Medicago truncatula cDNA clone pGVN-63O1 5' end, mRNA
sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatg 259
||||||||||||||||| |||||||
Sbjct: 594 gtcactcagtgtaccattgctcatg 618
>emb|CR305453.1| mte1-25I7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 827
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 accatcgctcatgccttggagaaaaccaaata 278
||||| |||||||| ||||||||||| |||||
Sbjct: 657 accattgctcatgctttggagaaaacaaaata 688
>gb|BF647979.1|BF647979 NF041A03EC1F1020 Elicited cell culture Medicago truncatula cDNA
clone NF041A03EC 5', mRNA sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 247 accatcgctcatgccttggagaaaaccaaata 278
||||| |||||||| ||||||||||| |||||
Sbjct: 417 accattgctcatgctttggagaaaacaaaata 448
>gb|AW775243.1|AW775243 EST331965 GVN Medicago truncatula cDNA clone pGVN-30K21, mRNA
sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 238 actcagtgtaccatcgctcatgc 260
|||||||||||||| ||||||||
Sbjct: 571 actcagtgtaccattgctcatgc 593
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,350
Number of Sequences: 392609
Number of extensions: 53350
Number of successful extensions: 2921
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2849
Number of HSP's gapped (non-prelim): 72
length of query: 319
length of database: 441,732,993
effective HSP length: 19
effective length of query: 300
effective length of database: 434,273,422
effective search space: 130282026600
effective search space used: 130282026600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)