BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC140030.6| Medicago truncatula clone mth2-7g24, complet... 38 0.76
emb|CR333982.1| mte1-64O15RM2 BAC end, cultivar Jemalong A1... 36 3.0
emb|CR506301.1| mth4-40N21RM1 BAC end, cultivar Jemalong A1... 36 3.0
gb|AL381543.1|AL381543 MtBC01F02R2 MtBC Medicago truncatula... 36 3.0
gb|AC146342.5| Medicago truncatula clone mth2-10o20, comple... 36 3.0
gb|AC146751.10| Medicago truncatula clone mth2-60a22, compl... 36 3.0
gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORK... 36 3.0
gb|AC141864.7| Medicago truncatula clone mth2-21o24, comple... 36 3.0
gb|AC151483.22| Medicago truncatula clone mth2-157f20, WORK... 36 3.0
>gb|AC140030.6| Medicago truncatula clone mth2-7g24, complete sequence
Length = 122057
Score = 38.2 bits (19), Expect = 0.76
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 309 aaagcaaatggtaaaaagacatg 331
||||||||||||||||| |||||
Sbjct: 82676 aaagcaaatggtaaaaaaacatg 82698
>emb|CR333982.1| mte1-64O15RM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 599
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 310 aagcaaatggtaaaaaga 327
||||||||||||||||||
Sbjct: 262 aagcaaatggtaaaaaga 245
>emb|CR506301.1| mth4-40N21RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 557
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 374 gaaatgccaactcatgcc 391
||||||||||||||||||
Sbjct: 502 gaaatgccaactcatgcc 485
>gb|AL381543.1|AL381543 MtBC01F02R2 MtBC Medicago truncatula cDNA clone MtBC01F02 T7, mRNA
sequence
Length = 553
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 98 acagttcaacaaaacact 115
||||||||||||||||||
Sbjct: 426 acagttcaacaaaacact 409
>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
Length = 112154
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 489 aaacaaatggtgtaaaat 506
||||||||||||||||||
Sbjct: 44380 aaacaaatggtgtaaaat 44397
>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence
Length = 119297
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 98 acagttcaacaaaacact 115
||||||||||||||||||
Sbjct: 82569 acagttcaacaaaacact 82552
>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
Length = 127679
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 196 gaatcagaagagatagag 213
||||||||||||||||||
Sbjct: 29347 gaatcagaagagatagag 29364
>gb|AC141864.7| Medicago truncatula clone mth2-21o24, complete sequence
Length = 106571
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 310 aagcaaatggtaaaaaga 327
||||||||||||||||||
Sbjct: 102706 aagcaaatggtaaaaaga 102723
>gb|AC151483.22| Medicago truncatula clone mth2-157f20, WORKING DRAFT SEQUENCE
Length = 119773
Score = 36.2 bits (18), Expect = 3.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 218 ctcctcacaagaaaattg 235
||||||||||||||||||
Sbjct: 63073 ctcctcacaagaaaattg 63056
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,096
Number of Sequences: 392609
Number of extensions: 136096
Number of successful extensions: 11538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11517
Number of HSP's gapped (non-prelim): 21
length of query: 559
length of database: 441,732,993
effective HSP length: 19
effective length of query: 540
effective length of database: 434,273,422
effective search space: 234507647880
effective search space used: 234507647880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)