BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBB9c12.pg.2.1
(545 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR483625.1| mth2-150N20FM1 BAC end, cultivar Jemalong A... 50 2e-004
gb|AC162276.2| Medicago truncatula chromosome 7 clone mth2-... 50 2e-004
gb|AC171534.4| Medicago truncatula chromosome 7 BAC clone m... 50 2e-004
emb|CR509787.1| mth4-21M17FM1 BAC end, cultivar Jemalong A1... 48 8e-004
gb|AW687523.2|AW687523 NF010E07RT1F1054 Developing root Med... 46 0.003
gb|AC142095.9| Medicago truncatula clone mth2-14c17, comple... 46 0.003
gb|CB892825.1|CB892825 EST645617 HOGA Medicago truncatula c... 44 0.012
gb|CX532494.1|CX532494 s13dNF66F08MJ063_271277 Methyl Jasmo... 44 0.012
gb|AW127513.2|AW127513 M110722 DSIL Medicago truncatula cDN... 42 0.048
gb|BG456632.1|BG456632 NF083B07PL1F1059 Phosphate starved l... 42 0.048
gb|CA920182.1|CA920182 EST637900 MTUS Medicago truncatula c... 42 0.048
gb|AC136449.21| Medicago truncatula clone mth2-11k13, compl... 42 0.048
emb|CR346754.1| mte1-80G12RM1 BAC end, cultivar Jemalong A1... 40 0.19
emb|CR971733.1| mth4-19N13FM1 BAC end, cultivar Jemalong A1... 40 0.19
gb|AC124971.15| Medicago truncatula clone mth2-22h8, comple... 40 0.19
gb|AC152406.8| Medicago truncatula clone mth2-71o20, comple... 40 0.19
gb|AC151740.21| Medicago truncatula clone mth2-82n16, compl... 40 0.19
gb|AC169125.1| Medicago truncatula chromosome 7 clone mth2-... 40 0.19
gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKIN... 40 0.19
>emb|CR483625.1| mth2-150N20FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 631
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 acacattgcggatggaactcgacattggaagca 211
|||||||| ||||||||||| ||||||||||||
Sbjct: 67 acacattgtggatggaactccacattggaagca 99
>gb|AC162276.2| Medicago truncatula chromosome 7 clone mth2-145k10, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 124138
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 acacattgcggatggaactcgacattggaagca 211
|||||||| ||||||||||| ||||||||||||
Sbjct: 119220 acacattgtggatggaactccacattggaagca 119252
Score = 46.1 bits (23), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 144 aagttctagcacataaagctacaggttgtttcttcacacattgcggatggaactcgacat 203
|||||||||||||| || ||| ||| ||||| | |||||||| || ||||| || ||||
Sbjct: 110709 aagttctagcacatgaatctatagggtgttttgtaacacattgtggttggaattccacat 110768
Query: 204 tggaagc 210
|||||||
Sbjct: 110769 tggaagc 110775
>gb|AC171534.4| Medicago truncatula chromosome 7 BAC clone mth2-90a20, complete
sequence
Length = 88903
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 acacattgcggatggaactcgacattggaagca 211
|||||||| ||||||||||| ||||||||||||
Sbjct: 12489 acacattgtggatggaactccacattggaagca 12521
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 179 acacattgcggatggaactcgacattggaagca 211
|||||||| ||||||||||| ||||||||||||
Sbjct: 7980 acacattgtggatggaactccacattggaagca 8012
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 128 tggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgc 187
|||||||||||| | || |||||||| ||| |||| | ||| ||||| | ||||||||
Sbjct: 35642 tggtgcccccagttagaggttctagctcatgaagcaatagggtgttttgtaacacattgt 35701
Query: 188 ggatggaactcgacattggaagc 210
|| ||||| || |||||||||||
Sbjct: 35702 ggttggaattccacattggaagc 35724
>emb|CR509787.1| mth4-21M17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 490
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 179 acacattgcggatggaactcgacattggaagc 210
|||||||| || ||||||||||||||||||||
Sbjct: 33 acacattgtggttggaactcgacattggaagc 2
>gb|AW687523.2|AW687523 NF010E07RT1F1054 Developing root Medicago truncatula cDNA clone
NF010E07RT 5', mRNA sequence
Length = 328
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 128 tggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgc 187
|||||||||||| | || |||||||| ||| |||| | ||| ||||| | ||||||||
Sbjct: 78 tggtgcccccagttagaggttctagctcatgaagcaatagggtgttttgtaacacattgt 137
Query: 188 ggatggaactcgacattggaagc 210
|| ||||| || |||||||||||
Sbjct: 138 ggttggaattccacattggaagc 160
>gb|AC142095.9| Medicago truncatula clone mth2-14c17, complete sequence
Length = 110037
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 128 tggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgc 187
|||||||||||| | || |||||||| ||| |||| | ||| ||||| | ||||||||
Sbjct: 13689 tggtgcccccagttagaggttctagctcatgaagcaatagggtgttttgtaacacattgt 13748
Query: 188 ggatggaactcgacattggaagc 210
|| ||||| || |||||||||||
Sbjct: 13749 ggttggaattccacattggaagc 13771
>gb|CB892825.1|CB892825 EST645617 HOGA Medicago truncatula cDNA clone HOGA-19J24, mRNA
sequence
Length = 812
Score = 44.1 bits (22), Expect = 0.012
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 153 cacataaagctacaggttgtttcttcacacattgcggatggaactcgacattggaagc 210
||||| ||||| ||||||||| | |||||||| || ||||||||||| ||||||||
Sbjct: 391 cacatgaagctttaggttgttttgtgacacattgtggttggaactcgacgttggaagc 448
>gb|CX532494.1|CX532494 s13dNF66F08MJ063_271277 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.012
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 153 cacataaagctacaggttgtttcttcacacattgcggatggaactcgacattggaagc 210
||||| ||||| ||||||||| | |||||||| || ||||||||||| ||||||||
Sbjct: 87 cacatgaagctttaggttgttttgtgacacattgtggttggaactcgacgttggaagc 144
>gb|AW127513.2|AW127513 M110722 DSIL Medicago truncatula cDNA clone IL275, mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.048
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaactcgacattggaagc 210
|||||||| ||||| || |||||||| || |||||||||||
Sbjct: 186 tgtttcttaacacactgtggatggaattctacattggaagc 226
>gb|BG456632.1|BG456632 NF083B07PL1F1059 Phosphate starved leaf Medicago truncatula cDNA
clone NF083B07PL 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.048
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaactcgacattggaagc 210
|||||||| ||||| || |||||||| || |||||||||||
Sbjct: 351 tgtttcttaacacactgtggatggaattctacattggaagc 391
>gb|CA920182.1|CA920182 EST637900 MTUS Medicago truncatula cDNA clone MTUS-24F9, mRNA
sequence
Length = 787
Score = 42.1 bits (21), Expect = 0.048
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 170 tgtttcttcacacattgcggatggaactcgacattggaagc 210
|||||||| ||||| || |||||||| || |||||||||||
Sbjct: 540 tgtttcttaacacactgtggatggaattctacattggaagc 500
>gb|AC136449.21| Medicago truncatula clone mth2-11k13, complete sequence
Length = 112369
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 38 ccattcatttgggttgtgagg 58
|||||||||||||||||||||
Sbjct: 34273 ccattcatttgggttgtgagg 34253
>emb|CR346754.1| mte1-80G12RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 496 tttaagttaatttttcaaatattt 519
||||||||||||||| ||||||||
Sbjct: 231 tttaagttaatttttaaaatattt 208
>emb|CR971733.1| mth4-19N13FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 179 acacattgcggatggaactcgacattggaagc 210
|||||||| || ||||||||||||| ||||||
Sbjct: 33 acacattgtggttggaactcgacataggaagc 2
>gb|AC124971.15| Medicago truncatula clone mth2-22h8, complete sequence
Length = 122754
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 496 tttaagttaatttttcaaatattt 519
|||||||||||||| |||||||||
Sbjct: 102099 tttaagttaattttacaaatattt 102076
>gb|AC152406.8| Medicago truncatula clone mth2-71o20, complete sequence
Length = 114919
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 496 tttaagttaatttttcaaatattt 519
|||||||||||||| |||||||||
Sbjct: 25737 tttaagttaattttacaaatattt 25714
>gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete sequence
Length = 131700
Score = 40.1 bits (20), Expect = 0.19
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 173 ttcttcacacattgcggatggaactcgacattggaa 208
||||| || ||||| ||||||||||| |||||||||
Sbjct: 60978 ttcttgactcattgtggatggaactccacattggaa 60943
>gb|AC169125.1| Medicago truncatula chromosome 7 clone mth2-3c24, *** SEQUENCING IN
PROGRESS ***, 5 ordered pieces
Length = 109061
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 496 tttaagttaatttttcaaatattt 519
||||||||||||||| ||||||||
Sbjct: 24067 tttaagttaatttttaaaatattt 24044
>gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKING DRAFT SEQUENCE, 4 unordered
pieces
Length = 151398
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 497 ttaagttaatttttcaaata 516
||||||||||||||||||||
Sbjct: 132011 ttaagttaatttttcaaata 132030
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,262
Number of Sequences: 392609
Number of extensions: 155262
Number of successful extensions: 12493
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12418
Number of HSP's gapped (non-prelim): 75
length of query: 545
length of database: 441,732,993
effective HSP length: 19
effective length of query: 526
effective length of database: 434,273,422
effective search space: 228427819972
effective search space used: 228427819972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)