BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ4d09.yg.2.1
(542 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW573685.1|AW573685 EST316276 GVN Medicago truncatula cD... 40 0.19
gb|AW684225.1|AW684225 NF014C10NR1F1000 Nodulated root Medi... 40 0.19
gb|AW774331.1|AW774331 EST333482 KV3 Medicago truncatula cD... 40 0.19
gb|BE124437.1|BE124437 EST393472 GVN Medicago truncatula cD... 40 0.19
gb|BF519768.1|BF519768 EST457232 DSIL Medicago truncatula c... 40 0.19
gb|BG451806.1|BG451806 NF101D06DT1F1047 Drought Medicago tr... 40 0.19
gb|BG580648.1|BG580648 EST482367 GVN Medicago truncatula cD... 40 0.19
gb|BG583896.1|BG583896 EST485655 GVN Medicago truncatula cD... 40 0.19
gb|BG587882.1|BG587882 EST489657 KV3 Medicago truncatula cD... 40 0.19
gb|BQ165820.1|BQ165820 EST611689 KVKC Medicago truncatula c... 40 0.19
gb|CF069827.1|CF069827 EST670548 MTUS Medicago truncatula c... 40 0.19
gb|AC138452.10| Medicago truncatula clone mth2-17p11, compl... 40 0.19
gb|AC147430.9| Medicago truncatula clone mth2-71e6, complet... 40 0.19
gb|AC174455.4| Medicago truncatula clone mth2-92e7, WORKING... 40 0.19
>gb|AW573685.1|AW573685 EST316276 GVN Medicago truncatula cDNA clone pGVN-47L22, mRNA
sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 100 ggaatgagccactatgtcct 119
>gb|AW684225.1|AW684225 NF014C10NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF014C10NR 5', mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 199 ggaatgagccactatgtcct 218
>gb|AW774331.1|AW774331 EST333482 KV3 Medicago truncatula cDNA clone pKV3-22C6, mRNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 190 ggaatgagccactatgtcct 209
>gb|BE124437.1|BE124437 EST393472 GVN Medicago truncatula cDNA clone pGVN-59J13, mRNA
sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 23 ggaatgagccactatgtcct 42
>gb|BF519768.1|BF519768 EST457232 DSIL Medicago truncatula cDNA clone pDSIL-21L11, mRNA
sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 202 ggaatgagccactatgtcct 221
>gb|BG451806.1|BG451806 NF101D06DT1F1047 Drought Medicago truncatula cDNA clone NF101D06DT
5', mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 217 ggaatgagccactatgtcct 236
>gb|BG580648.1|BG580648 EST482367 GVN Medicago truncatula cDNA clone pGVN-61K9 5' end, mRNA
sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 168 ggaatgagccactatgtcct 187
>gb|BG583896.1|BG583896 EST485655 GVN Medicago truncatula cDNA clone pGVN-74J10 5' end,
mRNA sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 217 ggaatgagccactatgtcct 236
>gb|BG587882.1|BG587882 EST489657 KV3 Medicago truncatula cDNA clone pKV3-13O4 5' end, mRNA
sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 205 ggaatgagccactatgtcct 224
>gb|BQ165820.1|BQ165820 EST611689 KVKC Medicago truncatula cDNA clone pKVKC-12A6, mRNA
sequence
Length = 718
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 201 ggaatgagccactatgtcct 220
>gb|CF069827.1|CF069827 EST670548 MTUS Medicago truncatula cDNA clone MTUS-24G5, mRNA
sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 172 ggaatgagccactatgtcct 191
>gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete sequence
Length = 127710
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 27987 ggaatgagccactatgtcct 28006
>gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete sequence
Length = 125478
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 109602 ggaatgagccactatgtcct 109621
>gb|AC174455.4| Medicago truncatula clone mth2-92e7, WORKING DRAFT SEQUENCE, 28 unordered
pieces
Length = 147956
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148 ggaatgagccactatgtcct 167
||||||||||||||||||||
Sbjct: 111218 ggaatgagccactatgtcct 111199
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,529
Number of Sequences: 392609
Number of extensions: 90529
Number of successful extensions: 7600
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7571
Number of HSP's gapped (non-prelim): 29
length of query: 542
length of database: 441,732,993
effective HSP length: 19
effective length of query: 523
effective length of database: 434,273,422
effective search space: 227124999706
effective search space used: 227124999706
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)