BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI974312.1|AI974312 T110314e KV0 Medicago truncatula cDN... 42 0.047
gb|AW267962.1|AW267962 EST306184 DSIR Medicago truncatula c... 42 0.047
gb|AW560713.1|AW560713 EST315761 DSIR Medicago truncatula c... 42 0.047
gb|AW774726.1|AW774726 EST333877 KV3 Medicago truncatula cD... 42 0.047
gb|BE204278.1|BE204278 EST396954 KV0 Medicago truncatula cD... 42 0.047
gb|BF637102.1|BF637102 NF076H04LF1F1041 Developing leaf Med... 42 0.047
gb|BF641921.1|BF641921 NF057H03IN1F1031 Insect herbivory Me... 42 0.047
gb|BF642578.1|BF642578 NF060H02IN1F1026 Insect herbivory Me... 42 0.047
gb|BF642723.1|BF642723 NF069H03IN1F1031 Insect herbivory Me... 42 0.047
gb|BF650513.1|BF650513 NF090A12EC1F1087 Elicited cell cultu... 42 0.047
gb|AW692170.2|AW692170 NF052H06ST1F1000 Developing stem Med... 42 0.047
gb|AW695764.2|AW695764 NF098D01ST1F1012 Developing stem Med... 42 0.047
gb|AW693050.2|AW693050 NF059C06ST1F1049 Developing stem Med... 42 0.047
gb|BE321195.2|BE321195 NF022A07IN1F1049 Insect herbivory Me... 42 0.047
gb|BE322224.2|BE322224 NF022A07IN1F1050 Insect herbivory Me... 42 0.047
gb|BE322155.2|BE322155 NF010E11IN1F1084 Insect herbivory Me... 42 0.047
gb|BG645388.1|BG645388 EST507007 KV3 Medicago truncatula cD... 42 0.047
gb|BG646545.1|BG646545 EST508164 HOGA Medicago truncatula c... 42 0.047
gb|BI265990.1|BI265990 NF094G09IN1F1072 Insect herbivory Me... 42 0.047
gb|BQ165586.1|BQ165586 EST611455 KVKC Medicago truncatula c... 42 0.047
gb|AJ501840.1|AJ501840 AJ501840 MTAMP Medicago truncatula c... 42 0.047
gb|AJ501849.1|AJ501849 AJ501849 MTAMP Medicago truncatula c... 42 0.047
gb|AJ503789.1|AJ503789 AJ503789 MTAMP Medicago truncatula c... 42 0.047
gb|CA921279.1|CA921279 EST638997 MTUS Medicago truncatula c... 42 0.047
gb|CB891225.1|CB891225 EST648194 KV3 Medicago truncatula cD... 42 0.047
gb|CB891651.1|CB891651 EST648620 KV3 Medicago truncatula cD... 42 0.047
gb|CB892060.1|CB892060 EST649029 KV3 Medicago truncatula cD... 42 0.047
gb|CX525081.1|CX525081 s13dNF22C07AT054_478796 Aphid-Infect... 42 0.047
gb|DW017133.1|DW017133 EST1226094 MTY Medicago truncatula c... 42 0.047
gb|BQ146286.1|BQ146286 NF034B10FL1F1080 Developing flower M... 40 0.19
gb|AC138016.14| Medicago truncatula clone mth2-34f15, compl... 40 0.19
gb|AC152499.17| Medicago truncatula clone mth2-56f20, compl... 40 0.19
>gb|AI974312.1|AI974312 T110314e KV0 Medicago truncatula cDNA clone pKV0-1F22, mRNA
sequence
Length = 457
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 219 gctgttgaccattatcatcgataccagga 247
>gb|AW267962.1|AW267962 EST306184 DSIR Medicago truncatula cDNA clone pDSIR-8D11, mRNA
sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 226 gctgttgaccattatcatcgataccagga 254
>gb|AW560713.1|AW560713 EST315761 DSIR Medicago truncatula cDNA clone pDSIR-28G11, mRNA
sequence
Length = 461
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 222 gctgttgaccattatcatcgataccagga 250
>gb|AW774726.1|AW774726 EST333877 KV3 Medicago truncatula cDNA clone pKV3-23B8, mRNA
sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 198 gctgttgaccattatcatcgataccagga 226
>gb|BE204278.1|BE204278 EST396954 KV0 Medicago truncatula cDNA clone pKV0-15C22, mRNA
sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 210 gctgttgaccattatcatcgataccagga 238
>gb|BF637102.1|BF637102 NF076H04LF1F1041 Developing leaf Medicago truncatula cDNA clone
NF076H04LF 5', mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 231 gctgttgaccattatcatcgataccagga 259
>gb|BF641921.1|BF641921 NF057H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone
NF057H03IN 5', mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 224 gctgttgaccattatcatcgataccagga 252
>gb|BF642578.1|BF642578 NF060H02IN1F1026 Insect herbivory Medicago truncatula cDNA clone
NF060H02IN 5', mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 228 gctgttgaccattatcatcgataccagga 256
>gb|BF642723.1|BF642723 NF069H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone
NF069H03IN 5', mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 230 gctgttgaccattatcatcgataccagga 258
>gb|BF650513.1|BF650513 NF090A12EC1F1087 Elicited cell culture Medicago truncatula cDNA
clone NF090A12EC 5', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.047
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 15 aagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||| || || | ||| ||||||||||| ||||||||
Sbjct: 233 aagcaatggcgatgtagcagttgatcattatcatcgttacaagga 277
>gb|AW692170.2|AW692170 NF052H06ST1F1000 Developing stem Medicago truncatula cDNA clone
NF052H06ST 5', mRNA sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 234 gctgttgaccattatcatcgataccagga 262
>gb|AW695764.2|AW695764 NF098D01ST1F1012 Developing stem Medicago truncatula cDNA clone
NF098D01ST 5', mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 234 gctgttgaccattatcatcgataccagga 262
>gb|AW693050.2|AW693050 NF059C06ST1F1049 Developing stem Medicago truncatula cDNA clone
NF059C06ST 5', mRNA sequence
Length = 531
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 234 gctgttgaccattatcatcgataccagga 262
>gb|BE321195.2|BE321195 NF022A07IN1F1049 Insect herbivory Medicago truncatula cDNA clone
NF022A07IN 5', mRNA sequence
Length = 358
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 121 gctgttgaccattatcatcgataccagga 149
>gb|BE322224.2|BE322224 NF022A07IN1F1050 Insect herbivory Medicago truncatula cDNA clone
NF022A07IN 5', mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 121 gctgttgaccattatcatcgataccagga 149
>gb|BE322155.2|BE322155 NF010E11IN1F1084 Insect herbivory Medicago truncatula cDNA clone
NF010E11IN 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 216 gctgttgaccattatcatcgataccagga 244
>gb|BG645388.1|BG645388 EST507007 KV3 Medicago truncatula cDNA clone pKV3-46G13 5' end,
mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 218 gctgttgaccattatcatcgataccagga 246
>gb|BG646545.1|BG646545 EST508164 HOGA Medicago truncatula cDNA clone pHOGA-9I9 5' end,
mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 221 gctgttgaccattatcatcgataccagga 249
>gb|BI265990.1|BI265990 NF094G09IN1F1072 Insect herbivory Medicago truncatula cDNA clone
NF094G09IN 5', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 237 gctgttgaccattatcatcgataccagga 265
>gb|BQ165586.1|BQ165586 EST611455 KVKC Medicago truncatula cDNA clone pKVKC-10C8, mRNA
sequence
Length = 788
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 216 gctgttgaccattatcatcgataccagga 244
>gb|AJ501840.1|AJ501840 AJ501840 MTAMP Medicago truncatula cDNA clone mtgmadc120012e02,
mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 262 gctgttgaccattatcatcgataccagga 290
>gb|AJ501849.1|AJ501849 AJ501849 MTAMP Medicago truncatula cDNA clone mtgmadc120012e11,
mRNA sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 262 gctgttgaccattatcatcgataccagga 290
>gb|AJ503789.1|AJ503789 AJ503789 MTAMP Medicago truncatula cDNA clone mtgmadc120038c06,
mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 251 gctgttgaccattatcatcgataccagga 279
>gb|CA921279.1|CA921279 EST638997 MTUS Medicago truncatula cDNA clone MTUS-38D8, mRNA
sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 166 gctgttgaccattatcatcgataccagga 194
>gb|CB891225.1|CB891225 EST648194 KV3 Medicago truncatula cDNA clone KV3-49F17, mRNA
sequence
Length = 809
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 194 gctgttgaccattatcatcgataccagga 222
>gb|CB891651.1|CB891651 EST648620 KV3 Medicago truncatula cDNA clone KV3-51G14, mRNA
sequence
Length = 424
Score = 42.1 bits (21), Expect = 0.047
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 15 aagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||| || || | ||| ||||||||||| ||||||||
Sbjct: 154 aagcaatggcgatgtagcagttgatcattatcatcgttacaagga 198
>gb|CB892060.1|CB892060 EST649029 KV3 Medicago truncatula cDNA clone KV3-53E15, mRNA
sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 195 gctgttgaccattatcatcgataccagga 223
>gb|CX525081.1|CX525081 s13dNF22C07AT054_478796 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 243 gctgttgaccattatcatcgataccagga 271
>gb|DW017133.1|DW017133 EST1226094 MTY Medicago truncatula cDNA clone MTYAP85, mRNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 gctgctgaccattatcatcgatacaagga 59
|||| ||||||||||||||||||| ||||
Sbjct: 257 gctgttgaccattatcatcgataccagga 285
>gb|BQ146286.1|BQ146286 NF034B10FL1F1080 Developing flower Medicago truncatula cDNA clone
NF034B10FL 5', mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 347 gagtaaagcattgggtcacattcaatgagcca 378
|||||||||||||||| || || |||||||||
Sbjct: 339 gagtaaagcattgggttacttttaatgagcca 370
>gb|AC138016.14| Medicago truncatula clone mth2-34f15, complete sequence
Length = 116164
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 347 gagtaaagcattgggtcacattcaatgagcca 378
|||||||||||||||| || || |||||||||
Sbjct: 103996 gagtaaagcattgggttacttttaatgagcca 104027
>gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete sequence
Length = 125561
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 31 gctgctgaccattatcatcgatac 54
|||| |||||||||||||||||||
Sbjct: 77949 gctgttgaccattatcatcgatac 77926
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,237
Number of Sequences: 392609
Number of extensions: 98237
Number of successful extensions: 7124
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7088
Number of HSP's gapped (non-prelim): 36
length of query: 541
length of database: 441,732,993
effective HSP length: 19
effective length of query: 522
effective length of database: 434,273,422
effective search space: 226690726284
effective search space used: 226690726284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)