BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG936705.1|CG936705 MBEDP04TFC mth2 Medicago truncatula ... 40 0.28
emb|CR956399.4| M.truncatula DNA sequence from clone MTH2-7... 38 1.1
gb|CG962145.1|CG962145 MBEGM83TR mth2 Medicago truncatula g... 36 4.4
gb|AW257368.1|AW257368 EST305505 KV2 Medicago truncatula cD... 36 4.4
gb|AW329540.2|AW329540 N200786e rootphos(-) Medicago trunca... 36 4.4
gb|AW774777.1|AW774777 EST333928 KV3 Medicago truncatula cD... 36 4.4
gb|BI308044.1|BI308044 EST529454 GPOD Medicago truncatula c... 36 4.4
gb|CA919205.1|CA919205 EST636923 MTUS Medicago truncatula c... 36 4.4
gb|CX521078.1|CX521078 s13dNF65D07VI060_449942 Virus-Infect... 36 4.4
gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone m... 36 4.4
gb|AC157376.2| Medicago truncatula chromosome 7 BAC clone m... 36 4.4
emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-1... 36 4.4
gb|AC162161.8| Medicago truncatula clone mth2-2g22, WORKING... 36 4.4
gb|AC157779.16| Medicago truncatula clone mth2-156d20, WORK... 36 4.4
gb|AC173288.2| Medicago truncatula chromosome 2 clone mth2-... 36 4.4
gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone m... 36 4.4
gb|AC151724.20| Medicago truncatula clone mth2-78n17, WORKI... 36 4.4
>gb|CG936705.1|CG936705 MBEDP04TFC mth2 Medicago truncatula genomic clone 33B8, DNA
sequence
Length = 809
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 356 gttcaaaaagaaaatagcaa 375
||||||||||||||||||||
Sbjct: 81 gttcaaaaagaaaatagcaa 62
>emb|CR956399.4| M.truncatula DNA sequence from clone MTH2-7L7 on chromosome 3, complete
sequence
Length = 142604
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 401 tcttcaatatttgttaagt 419
|||||||||||||||||||
Sbjct: 125524 tcttcaatatttgttaagt 125506
>gb|CG962145.1|CG962145 MBEGM83TR mth2 Medicago truncatula genomic clone 51M21, DNA
sequence
Length = 596
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 438 ataatcttgctgcttgtt 455
||||||||||||||||||
Sbjct: 589 ataatcttgctgcttgtt 572
>gb|AW257368.1|AW257368 EST305505 KV2 Medicago truncatula cDNA clone KV2-9M10, mRNA
sequence
Length = 720
Score = 36.2 bits (18), Expect = 4.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 782 gtcaatgtgctctgcccagagtttgt 807
||||||||||| ||||| ||||||||
Sbjct: 572 gtcaatgtgctttgccctgagtttgt 547
>gb|AW329540.2|AW329540 N200786e rootphos(-) Medicago truncatula cDNA clone MHRP-21C6, mRNA
sequence
Length = 166
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 536 gatgatacatctgatgga 553
||||||||||||||||||
Sbjct: 71 gatgatacatctgatgga 54
>gb|AW774777.1|AW774777 EST333928 KV3 Medicago truncatula cDNA clone pKV3-23L16, mRNA
sequence
Length = 745
Score = 36.2 bits (18), Expect = 4.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 782 gtcaatgtgctctgcccagagtttgt 807
||||||||||| ||||| ||||||||
Sbjct: 650 gtcaatgtgctttgccctgagtttgt 675
>gb|BI308044.1|BI308044 EST529454 GPOD Medicago truncatula cDNA clone pGPOD-1P8 5' end,
mRNA sequence
Length = 776
Score = 36.2 bits (18), Expect = 4.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 782 gtcaatgtgctctgcccagagtttgt 807
||||||||||| ||||| ||||||||
Sbjct: 664 gtcaatgtgctttgccctgagtttgt 689
>gb|CA919205.1|CA919205 EST636923 MTUS Medicago truncatula cDNA clone MTUS-10D5, mRNA
sequence
Length = 829
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 454 ttttgagaagcatgtaca 471
||||||||||||||||||
Sbjct: 552 ttttgagaagcatgtaca 569
>gb|CX521078.1|CX521078 s13dNF65D07VI060_449942 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 563
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 454 ttttgagaagcatgtaca 471
||||||||||||||||||
Sbjct: 52 ttttgagaagcatgtaca 35
>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
sequence
Length = 99692
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 357 ttcaaaaagaaaatagca 374
||||||||||||||||||
Sbjct: 59306 ttcaaaaagaaaatagca 59289
>gb|AC157376.2| Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence
Length = 87346
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 357 ttcaaaaagaaaatagca 374
||||||||||||||||||
Sbjct: 75195 ttcaaaaagaaaatagca 75212
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3,
complete sequence
Length = 133351
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 450 cttgttttgagaagcatg 467
||||||||||||||||||
Sbjct: 3390 cttgttttgagaagcatg 3407
>gb|AC162161.8| Medicago truncatula clone mth2-2g22, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 110034
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 654 tcataataaacattggtt 671
||||||||||||||||||
Sbjct: 32660 tcataataaacattggtt 32677
>gb|AC157779.16| Medicago truncatula clone mth2-156d20, WORKING DRAFT SEQUENCE, 3
ordered pieces
Length = 122638
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 588 ttgttgctgtcattgatg 605
||||||||||||||||||
Sbjct: 62974 ttgttgctgtcattgatg 62991
>gb|AC173288.2| Medicago truncatula chromosome 2 clone mth2-145k7, *** SEQUENCING IN
PROGRESS ***, 5 ordered pieces
Length = 122167
Score = 36.2 bits (18), Expect = 4.4
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 304 tgtgactgtcgttgatttctcagaggaaaatggaagag 341
|||| |||| ||||||||||| || ||||| |||||||
Sbjct: 25342 tgtgtctgtagttgatttctctgaagaaaagggaagag 25379
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete
sequence
Length = 128810
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 aaaacactagtttatgat 538
||||||||||||||||||
Sbjct: 60450 aaaacactagtttatgat 60467
>gb|AC151724.20| Medicago truncatula clone mth2-78n17, WORKING DRAFT SEQUENCE, 7 ordered
pieces
Length = 148376
Score = 36.2 bits (18), Expect = 4.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 454 ttttgagaagcatgtaca 471
||||||||||||||||||
Sbjct: 66825 ttttgagaagcatgtaca 66808
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,270
Number of Sequences: 392609
Number of extensions: 217270
Number of successful extensions: 16901
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16849
Number of HSP's gapped (non-prelim): 52
length of query: 808
length of database: 441,732,993
effective HSP length: 20
effective length of query: 788
effective length of database: 433,880,813
effective search space: 341898080644
effective search space used: 341898080644
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)