BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR2a06.yg.3.1
         (612 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC174305.4|  Medicago truncatula clone mth2-108j24, WORKI...    38   0.84 

>gb|AC174305.4| Medicago truncatula clone mth2-108j24, WORKING DRAFT SEQUENCE, 8
           unordered pieces
          Length = 52707

 Score = 38.2 bits (19), Expect = 0.84
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 482 aaatactcactaattgcat 500
           |||||||||||||||||||
Sbjct: 173 aaatactcactaattgcat 191



  Database: Mt_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:46 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,580
Number of Sequences: 392609
Number of extensions: 104580
Number of successful extensions: 6917
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6915
Number of HSP's gapped (non-prelim): 2
length of query: 612
length of database: 441,732,993
effective HSP length: 19
effective length of query: 593
effective length of database: 434,273,422
effective search space: 257524139246
effective search space used: 257524139246
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)