BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA858912.1|CA858912 EST636167 GLSD Medicago truncatula c... 101 3e-019
gb|CA921115.1|CA921115 EST638833 MTUS Medicago truncatula c... 100 1e-018
gb|DW017999.1|DW017999 EST1226960 MTY Medicago truncatula c... 96 2e-017
gb|BF635200.1|BF635200 NF081G04DT1F1035 Drought Medicago tr... 76 1e-011
gb|BQ122549.1|BQ122549 EST608125 GLSD Medicago truncatula c... 76 1e-011
gb|AC126781.22| Medicago truncatula clone mth2-12m15, compl... 66 1e-008
gb|CA922225.1|CA922225 EST639943 MTUS Medicago truncatula c... 58 3e-006
gb|BI270858.1|BI270858 NF056C08FL1F1066 Developing flower M... 52 2e-004
gb|BQ147759.1|BQ147759 NF046D05FL1F1045 Developing flower M... 50 8e-004
gb|CX539985.1|CX539985 s13dNF43D12GS094_463242 Germinating ... 50 8e-004
gb|BG583859.1|BG583859 EST485617 GVN Medicago truncatula cD... 46 0.013
gb|CG925095.1|CG925095 MBEHB47TR mth2 Medicago truncatula g... 42 0.20
>gb|CA858912.1|CA858912 EST636167 GLSD Medicago truncatula cDNA clone pGLSD-39M16, mRNA
sequence
Length = 850
Score = 101 bits (51), Expect = 3e-019
Identities = 216/270 (80%), Gaps = 2/270 (0%)
Strand = Plus / Plus
Query: 1354 aagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggag 1413
||||||||||| |||| || ||||| ||||||||| | ||||| || || ||||||||||
Sbjct: 441 aagagcttgcttggacatgttataacttctaccaatcaactccaacaaaattggctggag 500
Query: 1414 aaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaacatcttga 1473
| || ||||| || ||| ||||| |||||||| ||||||| || || ||||| ||| | |
Sbjct: 501 agaactatttctttcattctggagaggacatgagtgtgggtacatcatggaatatcctaa 560
Query: 1474 gaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaataaaacatacc 1533
| || ||||| ||||| ||||| | ||||| |||||| | || || || || |||||||
Sbjct: 561 ggccagagacagttgagtcactcttttacctttggcgcctaaccggcaacaagacatacc 620
Query: 1534 aaga--ttgggggtgggacatattccaggcatttgagaagaactcccgcatagaatctgg 1591
|||| | |||| ||| | ||||| || || |||||||||||||| |||||||| || ||
Sbjct: 621 aagaactgggggttggaatatatttcaagcttttgagaagaactctcgcatagagtcagg 680
Query: 1592 atatgtgggactgagagatgtgaacactgg 1621
||||| ||||| | ||||| ||||||||
Sbjct: 681 ctatgttggactaaaggatgttaacactgg 710
>gb|CA921115.1|CA921115 EST638833 MTUS Medicago truncatula cDNA clone MTUS-36B8, mRNA
sequence
Length = 759
Score = 99.6 bits (50), Expect = 1e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 1527 acataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcatagaa 1586
||||||||||| ||||| ||| | ||||| || || |||||||||||||| ||||||||
Sbjct: 752 acataccaagactggggttggaatatatttcaagcttttgagaagaactctcgcatagag 693
Query: 1587 tctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagt 1646
|| || ||||| ||||| | ||||| |||||||| | ||||||||||||||||| |||
Sbjct: 692 tcaggctatgttggactaaaggatgttaacactggcgttaaagacaacatgatgcaaagt 633
Query: 1647 ttcttcctggcagagacgctgaagta 1672
||||| || || ||||| ||||||||
Sbjct: 632 ttctttcttgcggagacactgaagta 607
>gb|DW017999.1|DW017999 EST1226960 MTY Medicago truncatula cDNA clone MTYB096, mRNA
sequence
Length = 792
Score = 95.6 bits (48), Expect = 2e-017
Identities = 204/256 (79%)
Strand = Plus / Plus
Query: 442 gggaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggg 501
|||||||||| ||||| |||||||| |||||||||| |||||||| || ||||| ||||
Sbjct: 18 gggaaaaagtaaaagatgcaatgcttcatgcttggagttcttatgagaaatatgcatggg 77
Query: 502 gaatggacgagcttcagccacaatcgaagaatggtatcaacagctttggtggtcttggag 561
|| || || || |||||||| || || | |||| |||| |||||||| ||||||||||
Sbjct: 78 gacaagatgaactacagccacagtcaaaaagtggtgtcaatagctttggaggtcttggag 137
Query: 562 caacccttgttgactcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
|||| | |||| || |||||||| |||||||| ||||| || | || | |||||||
Sbjct: 138 caactttaattgattctcttgatacactatacattatgggtctcgatgaacagtttcaga 197
Query: 622 aagctagagactgggtggcggagtcattagactttgacaaggattatgatgcgagtgttt 681
|||| |||||||||| || | || | || ||| ||||||||||||| || |||||||
Sbjct: 198 aagcccgagactgggttgcaaactctctggattttaacaaggattatgaagcaagtgttt 257
Query: 682 ttgaaacgaccataag 697
| || || ||||||||
Sbjct: 258 tcgagacaaccataag 273
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 852 aatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaacttgaa 911
||||||||||||||| ||||| ||||| | ||||||||||| || || ||||| ||
Sbjct: 428 aatcctggatggactgggggtgagagtattttggcagattctggcactgaacaactagag 487
Query: 912 ttcatagctctttcacagaggactggagatcccaaataccagcagaagg 960
||||| ||||| || || ||||| ||||| || || || ||||||||||
Sbjct: 488 ttcattgctctatctcaaaggaccggagacccaaagtatcagcagaagg 536
>gb|BF635200.1|BF635200 NF081G04DT1F1035 Drought Medicago truncatula cDNA clone NF081G04DT
5', mRNA sequence
Length = 683
Score = 75.8 bits (38), Expect = 1e-011
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 1354 aagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggag 1413
||||||||||| |||| || ||||| ||||||||| | ||||| || || ||||||||||
Sbjct: 454 aagagcttgcttggacatgttataacttctaccaatcaactccaacaaaattggctggag 513
Query: 1414 aaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaacatcttga 1473
| || ||||| || ||| ||||| |||||||| ||||||| || || ||||| ||| | |
Sbjct: 514 agaactatttctttcattctggagaggacatgagtgtgggtacatcatggaatatcctaa 573
Query: 1474 gaccggagactgttgaatcact 1495
| || ||||| ||||| |||||
Sbjct: 574 ggccagagacagttgagtcact 595
>gb|BQ122549.1|BQ122549 EST608125 GLSD Medicago truncatula cDNA clone pGLSD-29E14, mRNA
sequence
Length = 329
Score = 75.8 bits (38), Expect = 1e-011
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 1354 aagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggag 1413
||||||||||| |||| || ||||| ||||||||| | ||||| || || ||||||||||
Sbjct: 156 aagagcttgcttggacatgttataacttctaccaatcaactccaacaaaattggctggag 215
Query: 1414 aaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaacatcttga 1473
| || ||||| || ||| ||||| |||||||| ||||||| || || ||||| ||| | |
Sbjct: 216 agaactatttctttcattctggagaggacatgagtgtgggtacatcatggaatatcctaa 275
Query: 1474 gaccggagactgttgaatcact 1495
| || ||||| ||||| |||||
Sbjct: 276 ggccagagacagttgagtcact 297
>gb|AC126781.22| Medicago truncatula clone mth2-12m15, complete sequence
Length = 116119
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 1524 aaaacataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcata 1583
|||||||||||||| ||||| ||| | || ||||| |||||||| |||||||| ||||
Sbjct: 30917 aaaacataccaagaatggggttggaatattttccaagcatttgaaaagaactctcgcact 30976
Query: 1584 gaatctggatatgtgggactgagagatgt 1612
||| | |||||||| ||||| ||||||||
Sbjct: 30977 gaaacaggatatgttggactcagagatgt 31005
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| || ||||| ||||| ||||||||||||| |||||||| ||||| || || |||
Sbjct: 31350 gtgaatacaggtgacaaagatgacatgatgcagagcttcttccttgcagaaaccctcaag 31409
Query: 1671 tacct 1675
|||||
Sbjct: 31410 tacct 31414
Score = 50.1 bits (25), Expect = 8e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1153 aaatgtgggagacatcaatggaaggtcta 1181
|||||||||||||||||||| ||||||||
Sbjct: 29581 aaatgtgggagacatcaatgaaaggtcta 29609
Score = 46.1 bits (23), Expect = 0.013
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctct 922
||||| ||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 27717 agtattcttgcagattctggttcagagcagcttgaatttatcgctct 27763
Score = 44.1 bits (22), Expect = 0.051
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1081 acagcttctacgaatatttgctcaaggtctggat 1114
||||||||||||| ||| ||||||||| ||||||
Sbjct: 28744 acagcttctacgagtatctgctcaaggcctggat 28777
Score = 42.1 bits (21), Expect = 0.20
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 714 cttagttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattaca 773
|||||| | |||||||| ||||| ||| |||| || || || ||||||| |||| || ||
Sbjct: 26930 cttagtgcttacgatctctctggcgatgaagtcttcctcgaaaaggctagagatcttgca 26989
Query: 774 gatcgactcttacctgcttgggatacaacatctggcatcccttataatagaat 826
||| | || | ||||||||| ||||| | || || ||||||||||| |||||
Sbjct: 26990 gataggcttctgcctgcttggaatacaccttcaggaatcccttataacagaat 27042
>gb|CA922225.1|CA922225 EST639943 MTUS Medicago truncatula cDNA clone MTUS-51A6, mRNA
sequence
Length = 687
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 1608 gatgtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctg 1667
||||| |||||||| | ||||||||||||||||| |||||||| || || ||||| |||
Sbjct: 660 gatgttaacactggcgttaaagacaacatgatgcaaagtttctttcttgcggagacactg 601
Query: 1668 aagta 1672
|||||
Sbjct: 600 aagta 596
>gb|BI270858.1|BI270858 NF056C08FL1F1066 Developing flower Medicago truncatula cDNA clone
NF056C08FL 5', mRNA sequence
Length = 203
Score = 52.0 bits (26), Expect = 2e-004
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
|||||||| || || | |||| |||| |||||||| |||||||||||||| | ||||
Sbjct: 53 cagccacagtcaaaaagtggtgtcaatagctttggaggtcttggagcaactttaattgat 112
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcagaaagctagagactgg 635
|| |||||||| |||||||| ||||| || | || | ||||||||||| ||||||||
Sbjct: 113 tctcttgatacactatacattatgggtctcgatgaacagtttcagaaagcccgagactgg 172
Query: 636 gt 637
||
Sbjct: 173 gt 174
>gb|BQ147759.1|BQ147759 NF046D05FL1F1045 Developing flower Medicago truncatula cDNA clone
NF046D05FL 5', mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 852 aatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaacttgaa 911
||||||||||||||| ||||| ||||| | ||||||||||| || || ||||| ||
Sbjct: 239 aatcctggatggactgggggtgagagtattttggcagattctggcactgaacaactagag 298
Query: 912 ttcatagctctttcacagaggactggagatcccaaataccagcagaagg 960
||||| ||||| || || ||||| ||||| || || || ||||||||||
Sbjct: 299 ttcattgctctatctcaaaggaccggagacccaaagtatcagcagaagg 347
Score = 46.1 bits (23), Expect = 0.013
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 658 acaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctta 717
||||||||||||| || |||||||| || || |||||||| || || || || || ||||
Sbjct: 45 acaaggattatgaagcaagtgttttcgagacaaccataagagtagtaggtggccttctta 104
Query: 718 gttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacagat 776
|| |||| ||||| || || || ||| | || ||||| || |||| ||||||| |||||
Sbjct: 105 gtacatatgatctttcaggcgacaaaattttccttgacaaagctagagatattgcagat 163
>gb|CX539985.1|CX539985 s13dNF43D12GS094_463242 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 660
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 852 aatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaacttgaa 911
||||||||||||||| ||||| ||||| | ||||||||||| || || ||||| ||
Sbjct: 292 aatcctggatggactgggggtgagagtattttggcagattctggcactgaacaactagag 351
Query: 912 ttcatagctctttcacagaggactggagatcccaaataccagcagaagg 960
||||| ||||| || || ||||| ||||| || || || ||||||||||
Sbjct: 352 ttcattgctctatctcaaaggaccggagacccaaagtatcagcagaagg 400
Score = 46.1 bits (23), Expect = 0.013
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 658 acaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctta 717
||||||||||||| || |||||||| || || |||||||| || || || || || ||||
Sbjct: 98 acaaggattatgaagcaagtgttttcgagacaaccataagagtagtaggtggccttctta 157
Query: 718 gttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacagat 776
|| |||| ||||| || || || ||| | || ||||| || |||| ||||||| |||||
Sbjct: 158 gtacatatgatctttcaggcgacaaaattttccttgacaaagctagagatattgcagat 216
>gb|BG583859.1|BG583859 EST485617 GVN Medicago truncatula cDNA clone pGVN-74B14 5' end, mRNA
sequence
Length = 804
Score = 46.1 bits (23), Expect = 0.013
Identities = 120/147 (81%), Gaps = 4/147 (2%)
Strand = Plus / Minus
Query: 1528 cataccaagattgggggtgggacatattccaggcatttgagaagaactcccg-catagaa 1586
|||||||||| ||||| ||| | ||||| || || |||||||||||||| || ||||||
Sbjct: 663 cataccaagactggggttggaatatatttcaagcttttgagaagaactctcgccatagag 604
Query: 1587 tctggatatgtgggact-gagagatgtgaacact-ggtgaaaaagacaac-atgatgcag 1643
|| || ||||| ||||| || ||||| |||||| || | ||||||||| ||||||||
Sbjct: 603 tcaggctatgttggactaaagggatgttaacactgggcgttaaagacaacaatgatgcaa 544
Query: 1644 agtttcttcctggcagagacgctgaag 1670
|||||||| || || ||||| ||||||
Sbjct: 543 agtttctttcttgcggagacactgaag 517
>gb|CG925095.1|CG925095 MBEHB47TR mth2 Medicago truncatula genomic clone 54G22, DNA
sequence
Length = 923
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 658 acaaggattatgatgcgagtgtttttgaaacgaccataagg 698
||||||||||||| || |||||||| || || |||||||||
Sbjct: 516 acaaggattatgaagcaagtgttttcgagacaaccataagg 476
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 607,638
Number of Sequences: 392609
Number of extensions: 607638
Number of successful extensions: 47494
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47444
Number of HSP's gapped (non-prelim): 49
length of query: 2249
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2229
effective length of database: 433,880,813
effective search space: 967120332177
effective search space used: 967120332177
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)