BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula c... 105 5e-021
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 103 2e-020
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 88 1e-015
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 74 2e-011
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 74 2e-011
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 74 2e-011
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 74 2e-011
gb|CB893638.1|CB893638 EST646430 HOGA Medicago truncatula c... 72 7e-011
emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A1... 64 2e-008
gb|CB893388.1|CB893388 EST646180 HOGA Medicago truncatula c... 56 4e-006
gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Med... 48 0.001
gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula c... 48 0.001
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 48 0.001
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 48 0.001
gb|CG975081.1|CG975081 MBEFW73TF mth2 Medicago truncatula g... 46 0.004
emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A1... 44 0.015
gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower M... 44 0.015
gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago tr... 40 0.24
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 40 0.24
gb|AC137825.26| Medicago truncatula clone mth2-23j1, comple... 40 0.24
gb|AC130802.36| Medicago truncatula clone mth2-28b21, compl... 40 0.24
>gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula cDNA clone MTYA123, mRNA
sequence
Length = 634
Score = 105 bits (53), Expect = 5e-021
Identities = 182/225 (80%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttccccacctg 100
|||||||||||| ||||||||||| || || | ||| ||||| | || || || |||||
Sbjct: 314 aactttcccctcgaatagtgcaatctgattgaggcccacatcccttcccttaccaacctg 255
Query: 101 gatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcatatat 160
||||||||||| || || ||||| ||||| | ||| || |||||||| || | || ||
Sbjct: 254 aatatattcatgatgagtaatgtttccttgacacaaggttgaattgaatcctgagtagat 195
Query: 161 atcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatgtgaaa 220
||||||||| ||||| || || || || |||||||| || ||||| ||||||||||| ||
Sbjct: 194 atcttcgctaatattgataacacgggaagccttgctgataccaccgcgggttatgtggaa 135
Query: 221 tatccgatcaaaaacatcaggatgtccatagtgcattcgaacttt 265
| | |||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 134 gactctatcaaaaacatcaggatgaccataatgcatacgaacttt 90
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 103 bits (52), Expect = 2e-020
Identities = 199/248 (80%)
Strand = Plus / Minus
Query: 18 acttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaagcca 77
|||||||| ||||| || || || |||||||| ||||| || ||||| ||||| || |||
Sbjct: 279 acttgctctccattaccacctgctactttcccttcaaagagggcaatctggtttaaacca 220
Query: 78 acatcacgccctttccccacctggatatattcatggtgtgtgatgttcccttggcgcaaa 137
||||| | ||||| || ||||| || |||||||||||||||| || || | |||||
Sbjct: 219 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatttccaagccgcaac 160
Query: 138 gtcgaattgaacccggcatatatatcttcgcttatattaatcactcgagacgccttgcta 197
|| || ||||| || |||||||||||||| || |||||||| || || || || || |||
Sbjct: 159 gtagagttgaagccagcatatatatcttcactaatattaataacacgtgaagctttacta 100
Query: 198 atgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcatt 257
|| || || || |||||||||||||| | ||||| ||||| || || |||||||||||
Sbjct: 99 atccctccacgagttatgtgaaatattctgtcaaatacatctgggtgcccatagtgcatg 40
Query: 258 cgaacttt 265
||||||||
Sbjct: 39 cgaacttt 32
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 87.7 bits (44), Expect = 1e-015
Identities = 197/248 (79%)
Strand = Plus / Minus
Query: 18 acttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaagcca 77
|||||||| ||||| || || || |||||||| ||||| || ||||| ||||| || |||
Sbjct: 255 acttgctctccattaccacctgctactttcccttcaaagagggcaatctggtttaaacca 196
Query: 78 acatcacgccctttccccacctggatatattcatggtgtgtgatgttcccttggcgcaaa 137
||||| | ||||| || ||||| || |||||||||||||||| || || | |||||
Sbjct: 195 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatttccaagccgcaac 136
Query: 138 gtcgaattgaacccggcatatatatcttcgcttatattaatcactcgagacgccttgcta 197
|| || ||||| || |||||||||||||| || |||||||| || || || || || |||
Sbjct: 135 gtagagttgaagccagcatatatatcttcactaatattaataacacgtgaagctttacta 76
Query: 198 atgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcatt 257
|| || || || |||||||||||||| | ||||| ||||| || |||||||||||
Sbjct: 75 atccctccacgagttatgtgaaatattctgtcaaatacatctgggaacccatagtgcatg 16
Query: 258 cgaacttt 265
||||||||
Sbjct: 15 cgaacttt 8
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 73.8 bits (37), Expect = 2e-011
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 159 atatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatgtga 218
||||||||||| ||||| || || || || |||||||| || ||||| |||||||||||
Sbjct: 5406 atatcttcgctaatattgataacacgggaagccttgctgataccaccgcgggttatgtgg 5465
Query: 219 aatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| | | |||||||||||||||||| ||||| ||||| ||||||
Sbjct: 5466 aagactctatcaaaaacatcaggatgaccataatgcatacgaact 5510
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 95 cacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||| ||||||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 4818 cacctgaatatattcatgatgagtaatgtttccttgacgcaaggttgaattgaa 4871
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 4702 aactttcccctcgaatagtgcaat 4725
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 73.8 bits (37), Expect = 2e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcatatcg 482
|||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||
Sbjct: 20524 tcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgtct 20465
Query: 483 atcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctc 535
|| ||||| | || || || ||||||||||| ||||| || ||||| |||||
Sbjct: 20464 atagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctc 20412
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 228 tcaaaaacatcaggatgtccatagtgcattcgaacttt 265
||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 20713 tcaaacacatctggatgaccataatgcattcgaacttt 20676
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 73.8 bits (37), Expect = 2e-011
Identities = 88/105 (83%)
Strand = Plus / Minus
Query: 159 atatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatgtga 218
||||||||||| ||||| || || || || |||||||| || ||||| |||||||||||
Sbjct: 4874 atatcttcgctaatattgataacacgggaagccttgctgataccaccgcgggttatgtgg 4815
Query: 219 aatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| | | |||||||||||||||||| ||||| ||||| ||||||
Sbjct: 4814 aagactctatcaaaaacatcaggatgaccataatgcatacgaact 4770
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 95 cacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||| ||||||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 5462 cacctgaatatattcatgatgagtaatgtttccttgacgcaaggttgaattgaa 5409
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 5578 aactttcccctcgaatagtgcaat 5555
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 73.8 bits (37), Expect = 2e-011
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcatatcg 482
|||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||
Sbjct: 12273 tcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgtct 12332
Query: 483 atcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctc 535
|| ||||| | || || || ||||||||||| ||||| || ||||| |||||
Sbjct: 12333 atagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctc 12385
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 228 tcaaaaacatcaggatgtccatagtgcattcgaacttt 265
||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 12084 tcaaacacatctggatgaccataatgcattcgaacttt 12121
>gb|CB893638.1|CB893638 EST646430 HOGA Medicago truncatula cDNA clone HOGA-28F5, mRNA
sequence
Length = 841
Score = 71.9 bits (36), Expect = 7e-011
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 479
|||||||| | || |||||||||||| | ||||| || |||| ||||||||||||||
Sbjct: 655 aattcttccaatacatttctcattttgaaagcttcttcatagtaattatcctgattcatg 596
Query: 480 tcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcaggt 539
||||| ||||| | || ||||| ||||| || || |||||||| |||||||| ||||||
Sbjct: 595 tcgatggtctgcaaagcttctccgcgagtaaatataatggcatgattttggttttcaggt 536
Query: 540 ntgccttcacc 550
| ||||||||
Sbjct: 535 ttcccttcacc 525
>emb|CR350839.1| mte1-86C17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 765
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcat 478
|||||||| | ||||||||| || | ||||||||| ||||||||||||||||||||
Sbjct: 704 tcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcat 759
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 228 tcaaaaacatcaggatgtccatagtgcattcgaacttt 265
||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 514 tcaaacacatctggatgaccataatgcattcgaacttt 551
>gb|CB893388.1|CB893388 EST646180 HOGA Medicago truncatula cDNA clone HOGA-27P9, mRNA
sequence
Length = 512
Score = 56.0 bits (28), Expect = 4e-006
Identities = 105/131 (80%)
Strand = Plus / Minus
Query: 420 aattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 479
|||||||| | || |||||||||||| | ||||| || |||| ||| ||||||||||
Sbjct: 410 aattcttccaatacatttctcattttgaaagcttcttcatagtaattaccctgattcatg 351
Query: 480 tcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcaggt 539
||||| |||| | || ||||| ||||| || || |||||||| |||||||| ||||||
Sbjct: 350 tcgatgttctgcaaagcttctccgcgagtaaatataatggcatgattttggttttcaggt 291
Query: 540 ntgccttcacc 550
| ||||||||
Sbjct: 290 ttcccttcacc 280
>gb|AW696467.2|AW696467 NF106E12ST1F1098 Developing stem Medicago truncatula cDNA clone
NF106E12ST 5', mRNA sequence
Length = 511
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| || ||||| |||||||| | ||||| |||| ||||||||||||||||
Sbjct: 340 gaaattcttgcagcaaattcctcattttgaaagcttcttccatatagttatcctgattca 281
Query: 478 tatc 481
||||
Sbjct: 280 tatc 277
>gb|AJ500423.1|AJ500423 AJ500423 MTGIM Medicago truncatula cDNA clone mtgmacc120016c03,
mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| || ||||| |||||||| | ||||| |||| ||||||||||||||||
Sbjct: 313 gaaattcttgcagcaaattcctcattttgaaagcttcttccatatagttatcctgattca 372
Query: 478 tatc 481
||||
Sbjct: 373 tatc 376
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 432 aaatttctcattttcattgcttcctccaagtagttatcct 471
|||||||||||||||| ||||| |||| |||||||||||
Sbjct: 6881 aaatttctcattttcaaggcttcttccatgtagttatcct 6842
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 432 aaatttctcattttcattgcttcctccaagtagttatcct 471
|||||||||||||||| ||||| |||| |||||||||||
Sbjct: 78278 aaatttctcattttcaaggcttcttccatgtagttatcct 78239
>gb|CG975081.1|CG975081 MBEFW73TF mth2 Medicago truncatula genomic clone 47N1, DNA sequence
Length = 791
Score = 46.1 bits (23), Expect = 0.004
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 183 cgagacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcagga 242
||||| ||||| ||||| || || ||||| ||||| || || | |||||||||||| |||
Sbjct: 709 cgagaagccttactaattcctccacgggtaatgtggaaaattctatcaaaaacatctgga 650
Query: 243 tgtccatagtg 253
|| ||||||||
Sbjct: 649 tgaccatagtg 639
>emb|CR351348.1| mte1-86D18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 228 tcaaaaacatcaggatgtccatagtgcattcgaacttt 265
||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 499 tcaaacacatctggatgaccataatgcattcgaacttt 536
>gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower Medicago truncatula cDNA clone
NF051G10FL 5', mRNA sequence
Length = 520
Score = 44.1 bits (22), Expect = 0.015
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgt 118
|||||||||||||| | ||||| || ||||| ||||||||||| |||||
Sbjct: 128 ttcaagccaacatctcttcctttacctacctgtatatattcatgatgtgt 79
>gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago truncatula cDNA clone
NF032G03DT 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 47 aactttcccctcgaatagtgcaat 24
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 227 atcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||||||| ||||| |||||||| | ||||||
Sbjct: 57060 atcaaaaacatccggatgaccatagtggaatcgaac 57095
>gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete sequence
Length = 130938
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 580 agtatatttcttggtctttg 599
||||||||||||||||||||
Sbjct: 11091 agtatatttcttggtctttg 11110
>gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete sequence
Length = 123626
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 427 caagtaaatttctcattttcattg 450
|||||||||| |||||||||||||
Sbjct: 22041 caagtaaattgctcattttcattg 22018
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158,532
Number of Sequences: 392609
Number of extensions: 158532
Number of successful extensions: 11542
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11476
Number of HSP's gapped (non-prelim): 62
length of query: 691
length of database: 441,732,993
effective HSP length: 19
effective length of query: 672
effective length of database: 434,273,422
effective search space: 291831739584
effective search space used: 291831739584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)