BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC148776.12| Medicago truncatula clone mth2-39g6, comple... 44 0.008
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 44 0.008
gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKIN... 44 0.008
emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2... 44 0.008
gb|AC174282.4| Medicago truncatula clone mth2-18p3, WORKING... 38 0.47
gb|AC174294.6| Medicago truncatula clone mth2-71d8, WORKING... 38 0.47
gb|CG939930.1|CG939930 MBEMB81TF mth2 Medicago truncatula g... 34 7.4
gb|CG947581.1|CG947581 MBECS14TR mth2 Medicago truncatula g... 34 7.4
gb|CG952585.1|CG952585 MBEMQ51TR mth2 Medicago truncatula g... 34 7.4
gb|CG954974.1|CG954974 MBECN04TR mth2 Medicago truncatula g... 34 7.4
gb|CG961696.1|CG961696 MBEDX55TRC mth2 Medicago truncatula ... 34 7.4
emb|CR323705.1| mte1-50H7FM1 BAC end, cultivar Jemalong A17... 34 7.4
emb|CR343517.1| mte1-76P23FM1 BAC end, cultivar Jemalong A1... 34 7.4
emb|CR507008.1| mth4-41P19RM1 BAC end, cultivar Jemalong A1... 34 7.4
emb|CR513124.1| mth4-42C15FM2 BAC end, cultivar Jemalong A1... 34 7.4
emb|CR964419.1| mth4-10B9RM1 BAC end, cultivar Jemalong A17... 34 7.4
gb|AW686924.2|AW686924 NF004A11RT1F1084 Developing root Med... 34 7.4
gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-... 34 7.4
gb|AC155898.15| Medicago truncatula clone mth2-109f1, compl... 34 7.4
gb|AC151620.26| Medicago truncatula clone mth2-2p16, WORKIN... 34 7.4
gb|AC158737.14| Medicago truncatula clone mth2-154f20, comp... 34 7.4
>gb|AC148776.12| Medicago truncatula clone mth2-39g6, complete sequence
Length = 109378
Score = 44.1 bits (22), Expect = 0.008
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 cagattcttccatggttgtattatcacaatgtcattgg 76
||||||||||| ||| ||| ||||||||| ||||||||
Sbjct: 107757 cagattcttccctggatgttttatcacaaagtcattgg 107794
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 44.1 bits (22), Expect = 0.008
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 39 cagattcttccatggttgtattatcacaatgtcattgg 76
||||||||||| ||| ||| ||||||||| ||||||||
Sbjct: 51897 cagattcttccctggatgttttatcacaaagtcattgg 51860
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 125828
Score = 44.1 bits (22), Expect = 0.008
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 39 cagattcttccatggttgtattatcacaatgtcattgg 76
||||||||||| ||| ||| ||||||||| ||||||||
Sbjct: 99107 cagattcttccctggatgttttatcacaaagtcattgg 99070
>emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2-39M4, WORKING DRAFT SEQUENCE
Length = 109385
Score = 44.1 bits (22), Expect = 0.008
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 cagattcttccatggttgtattatcacaatgtcattgg 76
||||||||||| ||| ||| ||||||||| ||||||||
Sbjct: 107758 cagattcttccctggatgttttatcacaaagtcattgg 107795
>gb|AC174282.4| Medicago truncatula clone mth2-18p3, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 83063
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 83 acatttctttctattagtt 101
|||||||||||||||||||
Sbjct: 9654 acatttctttctattagtt 9636
>gb|AC174294.6| Medicago truncatula clone mth2-71d8, WORKING DRAFT SEQUENCE, 10 unordered
pieces
Length = 151569
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83 acatttctttctattagtt 101
|||||||||||||||||||
Sbjct: 126118 acatttctttctattagtt 126136
>gb|CG939930.1|CG939930 MBEMB81TF mth2 Medicago truncatula genomic clone 84M18, DNA
sequence
Length = 912
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 ttcacatttctttctat 96
|||||||||||||||||
Sbjct: 154 ttcacatttctttctat 138
>gb|CG947581.1|CG947581 MBECS14TR mth2 Medicago truncatula genomic clone 28D3, DNA sequence
Length = 822
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 tcacatttctttctatt 97
|||||||||||||||||
Sbjct: 200 tcacatttctttctatt 216
>gb|CG952585.1|CG952585 MBEMQ51TR mth2 Medicago truncatula genomic clone 4I5, DNA sequence
Length = 919
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 ttcacatttctttctat 96
|||||||||||||||||
Sbjct: 149 ttcacatttctttctat 133
>gb|CG954974.1|CG954974 MBECN04TR mth2 Medicago truncatula genomic clone 27A8, DNA sequence
Length = 684
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 88 tctttctattagttgaa 104
|||||||||||||||||
Sbjct: 48 tctttctattagttgaa 32
>gb|CG961696.1|CG961696 MBEDX55TRC mth2 Medicago truncatula genomic clone 35J14, DNA
sequence
Length = 950
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 93 ctattagttgaaggaga 109
|||||||||||||||||
Sbjct: 77 ctattagttgaaggaga 93
>emb|CR323705.1| mte1-50H7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 720
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 44 tcttccatggttgtatt 60
|||||||||||||||||
Sbjct: 170 tcttccatggttgtatt 186
>emb|CR343517.1| mte1-76P23FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 673
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 44 tcttccatggttgtatt 60
|||||||||||||||||
Sbjct: 157 tcttccatggttgtatt 173
>emb|CR507008.1| mth4-41P19RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 400
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 tcacatttctttctatt 97
|||||||||||||||||
Sbjct: 205 tcacatttctttctatt 221
>emb|CR513124.1| mth4-42C15FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 704
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 ttcacatttctttctat 96
|||||||||||||||||
Sbjct: 154 ttcacatttctttctat 138
>emb|CR964419.1| mth4-10B9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 550
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 tcacatttctttctatt 97
|||||||||||||||||
Sbjct: 205 tcacatttctttctatt 221
>gb|AW686924.2|AW686924 NF004A11RT1F1084 Developing root Medicago truncatula cDNA clone
NF004A11RT 5', mRNA sequence
Length = 752
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 64 acaatgtcattggtgtt 80
|||||||||||||||||
Sbjct: 489 acaatgtcattggtgtt 505
>gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-58i9, *** SEQUENCING IN
PROGRESS ***, 11 unordered pieces
Length = 127336
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 ttcacatttctttctat 96
|||||||||||||||||
Sbjct: 83358 ttcacatttctttctat 83342
>gb|AC155898.15| Medicago truncatula clone mth2-109f1, complete sequence
Length = 93173
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 82 cacatttctttctatta 98
|||||||||||||||||
Sbjct: 48811 cacatttctttctatta 48795
>gb|AC151620.26| Medicago truncatula clone mth2-2p16, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 109154
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 93 ctattagttgaaggaga 109
|||||||||||||||||
Sbjct: 66439 ctattagttgaaggaga 66423
>gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete sequence
Length = 114538
Score = 34.2 bits (17), Expect = 7.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 82 cacatttctttctatta 98
|||||||||||||||||
Sbjct: 4613 cacatttctttctatta 4597
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,914
Number of Sequences: 392609
Number of extensions: 57914
Number of successful extensions: 4244
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4209
Number of HSP's gapped (non-prelim): 35
length of query: 352
length of database: 441,732,993
effective HSP length: 19
effective length of query: 333
effective length of database: 434,273,422
effective search space: 144613049526
effective search space used: 144613049526
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)