BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF1g01.yg.2.1
(335 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 74 8e-012
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 74 8e-012
gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula c... 54 8e-006
gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower M... 44 0.007
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 44 0.007
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 44 0.007
gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago tr... 40 0.11
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 73.8 bits (37), Expect = 8e-012
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 18 acttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaagcca 77
|||||||| ||||| || || || |||||||| ||||| || ||||| ||||| || |||
Sbjct: 255 acttgctctccattaccacctgctactttcccttcaaagagggcaatctggtttaaacca 196
Query: 78 acatcacgccctttccccacctggatatattcatggtgtgtgatgttcccttggcgcaaa 137
||||| | ||||| || ||||| || |||||||||||||||| || || | |||||
Sbjct: 195 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatttccaagccgcaac 136
Query: 138 gtcgaattgaacccggcatatatatcttcgcttatattaat 178
|| || ||||| || |||||||||||||| || ||||||||
Sbjct: 135 gtagagttgaagccagcatatatatcttcactaatattaat 95
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 73.8 bits (37), Expect = 8e-012
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 18 acttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaagcca 77
|||||||| ||||| || || || |||||||| ||||| || ||||| ||||| || |||
Sbjct: 279 acttgctctccattaccacctgctactttcccttcaaagagggcaatctggtttaaacca 220
Query: 78 acatcacgccctttccccacctggatatattcatggtgtgtgatgttcccttggcgcaaa 137
||||| | ||||| || ||||| || |||||||||||||||| || || | |||||
Sbjct: 219 acatcccttccttttccaacctgaatgtattcatggtgtgtgacatttccaagccgcaac 160
Query: 138 gtcgaattgaacccggcatatatatcttcgcttatattaat 178
|| || ||||| || |||||||||||||| || ||||||||
Sbjct: 159 gtagagttgaagccagcatatatatcttcactaatattaat 119
>gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula cDNA clone MTYA123, mRNA
sequence
Length = 634
Score = 54.0 bits (27), Expect = 8e-006
Identities = 108/135 (80%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttccccacctg 100
|||||||||||| ||||||||||| || || | ||| ||||| | || || || |||||
Sbjct: 314 aactttcccctcgaatagtgcaatctgattgaggcccacatcccttcccttaccaacctg 255
Query: 101 gatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcatatat 160
||||||||||| || || ||||| ||||| | ||| || |||||||| || | || ||
Sbjct: 254 aatatattcatgatgagtaatgtttccttgacacaaggttgaattgaatcctgagtagat 195
Query: 161 atcttcgcttatatt 175
||||||||| |||||
Sbjct: 194 atcttcgctaatatt 180
>gb|BI271181.1|BI271181 NF051G10FL1F1084 Developing flower Medicago truncatula cDNA clone
NF051G10FL 5', mRNA sequence
Length = 520
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgt 118
|||||||||||||| | ||||| || ||||| ||||||||||| |||||
Sbjct: 128 ttcaagccaacatctcttcctttacctacctgtatatattcatgatgtgt 79
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 44.1 bits (22), Expect = 0.007
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 95 cacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||| ||||||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 4818 cacctgaatatattcatgatgagtaatgtttccttgacgcaaggttgaattgaa 4871
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 4702 aactttcccctcgaatagtgcaat 4725
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 44.1 bits (22), Expect = 0.007
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 95 cacctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||| ||||||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 5462 cacctgaatatattcatgatgagtaatgtttccttgacgcaaggttgaattgaa 5409
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 5578 aactttcccctcgaatagtgcaat 5555
>gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago truncatula cDNA clone
NF032G03DT 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 41 aactttcccctcaaatagtgcaat 64
|||||||||||| |||||||||||
Sbjct: 47 aactttcccctcgaatagtgcaat 24
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,841
Number of Sequences: 392609
Number of extensions: 46841
Number of successful extensions: 2833
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2814
Number of HSP's gapped (non-prelim): 16
length of query: 335
length of database: 441,732,993
effective HSP length: 19
effective length of query: 316
effective length of database: 434,273,422
effective search space: 137230401352
effective search space used: 137230401352
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)