BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW689635.1|AW689635 NF022F04ST1F1000 Developing stem Med... 64 5e-008
gb|BE187520.1|BE187520 EST336081 KV0 Medicago truncatula cD... 64 5e-008
gb|BE325256.1|BE325256 NF119C10ST1F1081 Developing stem Med... 64 5e-008
gb|AL368467.1|AL368467 MtBA24F08F1 MtBA Medicago truncatula... 64 5e-008
gb|AW694074.2|AW694074 NF072C01ST1F1004 Developing stem Med... 64 5e-008
gb|BG447588.1|BG447588 NF009C07ST1F1000 Developing stem Med... 64 5e-008
gb|BG644618.1|BG644618 EST506237 KV3 Medicago truncatula cD... 64 5e-008
gb|BG648151.1|BG648151 EST509770 HOGA Medicago truncatula c... 64 5e-008
gb|AC135797.13| Medicago truncatula clone mth2-11f7, comple... 64 5e-008
gb|AC125368.7| Medicago truncatula clone mth2-13h15, comple... 64 5e-008
gb|BG453761.1|BG453761 NF093G06LF1F1049 Developing leaf Med... 62 2e-007
gb|BI272787.1|BI272787 NF092B08FL1F1064 Developing flower M... 62 2e-007
gb|BQ124580.1|BQ124580 EST610156 GLSD Medicago truncatula c... 62 2e-007
gb|CX530050.1|CX530050 s13dNF98E09MJ068_246136 Methyl Jasmo... 56 1e-005
gb|CG926528.1|CG926528 MBECM26TR mth2 Medicago truncatula g... 54 5e-005
gb|CG967118.1|CG967118 MBEKS49TF mth2 Medicago truncatula g... 54 5e-005
emb|CR483511.1| mth2-150D18RM1 BAC end, cultivar Jemalong A... 42 0.19
emb|CR496997.1| mth2-172F6FM1 BAC end, cultivar Jemalong A1... 42 0.19
emb|CR306103.1| mte1-26C2RM1 BAC end, cultivar Jemalong A17... 42 0.19
gb|AW559239.1|AW559239 EST306075 DSIR Medicago truncatula c... 42 0.19
gb|AL367160.1|AL367160 MtBA12F02R1 MtBA Medicago truncatula... 42 0.19
gb|BE248069.2|BE248069 NF001A11DT1F1081 Drought Medicago tr... 42 0.19
gb|CA920510.1|CA920510 EST638228 MTUS Medicago truncatula c... 42 0.19
gb|CB891929.1|CB891929 EST648898 KV3 Medicago truncatula cD... 42 0.19
gb|AC119413.16| Medicago truncatula clone mth2-19p2, comple... 42 0.19
gb|AC149079.7| Medicago truncatula clone mth2-75i8, complet... 42 0.19
emb|CR954195.2| Medicago truncatula chromosome 5 clone mth2... 42 0.19
gb|AC119408.22| Medicago truncatula clone mth2-5f18, comple... 42 0.19
>gb|AW689635.1|AW689635 NF022F04ST1F1000 Developing stem Medicago truncatula cDNA clone
NF022F04ST 5', mRNA sequence
Length = 678
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 407 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 466
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 467 ctttttgctgcagtacctgc 486
>gb|BE187520.1|BE187520 EST336081 KV0 Medicago truncatula cDNA clone pKV0-10E13, mRNA
sequence
Length = 642
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 388 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 447
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 448 ctttttgctgcagtacctgc 467
>gb|BE325256.1|BE325256 NF119C10ST1F1081 Developing stem Medicago truncatula cDNA clone
NF119C10ST 5', mRNA sequence
Length = 641
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 438 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 497
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 498 ctttttgctgcagtacctgc 517
>gb|AL368467.1|AL368467 MtBA24F08F1 MtBA Medicago truncatula cDNA clone MtBA24F08 T3, mRNA
sequence
Length = 491
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 398 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 457
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 458 ctttttgctgcagtacctgc 477
>gb|AW694074.2|AW694074 NF072C01ST1F1004 Developing stem Medicago truncatula cDNA clone
NF072C01ST 5', mRNA sequence
Length = 515
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 405 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 464
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 465 ctttttgctgcagtacctgc 484
>gb|BG447588.1|BG447588 NF009C07ST1F1000 Developing stem Medicago truncatula cDNA clone
NF009C07ST 5', mRNA sequence
Length = 679
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 411 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 470
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 471 ctttttgctgcagtacctgc 490
>gb|BG644618.1|BG644618 EST506237 KV3 Medicago truncatula cDNA clone pKV3-37F18 5' end,
mRNA sequence
Length = 754
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 323 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 382
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 383 ctttttgctgcagtacctgc 402
>gb|BG648151.1|BG648151 EST509770 HOGA Medicago truncatula cDNA clone pHOGA-18P22 5' end,
mRNA sequence
Length = 721
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 285 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 344
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 345 ctttttgctgcagtacctgc 364
>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence
Length = 118242
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 75982 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 76041
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 76042 ctttttgctgcagtacctgc 76061
Score = 60.0 bits (30), Expect = 8e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1223 ttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatc 1282
|||||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 77834 ttcctctcaagagaatatgttcaaccacaatgggtatttgactgtgtgaatgcacggata 77893
Query: 1283 atattgccaacaga 1296
|| |||||||||||
Sbjct: 77894 attttgccaacaga 77907
>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence
Length = 124271
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||| |||
Sbjct: 82011 aggtacccaagatttgttgatgcacttggagaattggatgactgtcttacaatggtacat 82070
Query: 401 ctgtttgcggcattacctgc 420
|| ||||| ||| |||||||
Sbjct: 82071 ctttttgctgcagtacctgc 82090
Score = 60.0 bits (30), Expect = 8e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1223 ttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatc 1282
|||||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 83863 ttcctctcaagagaatatgttcaaccacaatgggtatttgactgtgtgaatgcacggata 83922
Query: 1283 atattgccaacaga 1296
|| |||||||||||
Sbjct: 83923 attttgccaacaga 83936
>gb|BG453761.1|BG453761 NF093G06LF1F1049 Developing leaf Medicago truncatula cDNA clone
NF093G06LF 5', mRNA sequence
Length = 646
Score = 61.9 bits (31), Expect = 2e-007
Identities = 97/119 (81%)
Strand = Plus / Plus
Query: 1223 ttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatc 1282
|||||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 28 ttcctctcaagagaatatgttcaaccacaatgggtatttgactgtgtgaatgcacggata 87
Query: 1283 atattgccaacagaaggttatcttgttggaagagtacctccaccacatttgtctccttt 1341
|| ||||||||||| |||| |||| ||||| | |||||||| || ||||| |||||
Sbjct: 88 attttgccaacagacaattattttgtgggaaggattcctccaccgcacttgtcgccttt 146
>gb|BI272787.1|BI272787 NF092B08FL1F1064 Developing flower Medicago truncatula cDNA clone
NF092B08FL 5', mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 2e-007
Identities = 97/119 (81%)
Strand = Plus / Plus
Query: 1223 ttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatc 1282
|||||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 65 ttcctctcaagagaatatgttcaaccacaatgggtatttgactgtgtgaatgcacggata 124
Query: 1283 atattgccaacagaaggttatcttgttggaagagtacctccaccacatttgtctccttt 1341
|| ||||||||||| |||| |||| ||||| | |||||||| || ||||| |||||
Sbjct: 125 attttgccaacagacaattattttgtgggaaggattcctccaccgcacttgtcgccttt 183
>gb|BQ124580.1|BQ124580 EST610156 GLSD Medicago truncatula cDNA clone pGLSD-35N15, mRNA
sequence
Length = 709
Score = 61.9 bits (31), Expect = 2e-007
Identities = 97/119 (81%)
Strand = Plus / Plus
Query: 1223 ttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatc 1282
|||||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 25 ttcctctcaagagaatatgttcaaccacaatgggtatttgactgtgtgaatgcacggata 84
Query: 1283 atattgccaacagaaggttatcttgttggaagagtacctccaccacatttgtctccttt 1341
|| ||||||||||| |||| |||| ||||| | |||||||| || ||||| |||||
Sbjct: 85 attttgccaacagacaattattttgtgggaaggattcctccaccgcacttgtcgccttt 143
>gb|CX530050.1|CX530050 s13dNF98E09MJ068_246136 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 665
Score = 56.0 bits (28), Expect = 1e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaa 1297
|||||||||||||| ||||| ||||| ||||| ||||| || || || |||||||||||
Sbjct: 14 tatgttcaaccacaatgggtatttgactgtgtgaatgcacggataattttgccaacagac 73
Query: 1298 ggttatcttgttggaagagtacctccaccacatttgtctccttt 1341
|||| |||| ||||| | |||||||| || ||||| |||||
Sbjct: 74 aattattttgtgggaaggattcctccaccgcacttgtcgccttt 117
>gb|CG926528.1|CG926528 MBECM26TR mth2 Medicago truncatula genomic clone 27E3, DNA sequence
Length = 849
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1242 ttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacaga 1296
|||||||||||||| | ||||||||||||||||| || || || ||||| |||||
Sbjct: 680 ttcaaccacagtggatatttgattgtgtaaatgcacgcataattttgccgacaga 734
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 aatgaacctggtgcactgatg 985
|||||||||||||||||||||
Sbjct: 67 aatgaacctggtgcactgatg 87
>gb|CG967118.1|CG967118 MBEKS49TF mth2 Medicago truncatula genomic clone 76J1, DNA sequence
Length = 917
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 1242 ttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacaga 1296
|||||||||||||| | ||||||||||||||||| || || || ||||| |||||
Sbjct: 726 ttcaaccacagtggatatttgattgtgtaaatgcacgcataattttgccgacaga 780
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 965 aatgaacctggtgcactgatg 985
|||||||||||||||||||||
Sbjct: 113 aatgaacctggtgcactgatg 133
>emb|CR483511.1| mth2-150D18RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 196 gcaaagaaaagaaaaagaagaaagt 220
>emb|CR496997.1| mth2-172F6FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 196 gcaaagaaaagaaaaagaagaaagt 220
>emb|CR306103.1| mte1-26C2RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1681 ggatgatgatgatgatattgg 1701
|||||||||||||||||||||
Sbjct: 251 ggatgatgatgatgatattgg 271
>gb|AW559239.1|AW559239 EST306075 DSIR Medicago truncatula cDNA clone pDSIR-7F10, mRNA
sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 131 gcaaagaaaagaaaaagaagaaagt 155
>gb|AL367160.1|AL367160 MtBA12F02R1 MtBA Medicago truncatula cDNA clone MtBA12F02 T7, mRNA
sequence
Length = 433
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 237 gcaaagaaaagaaaaagaagaaagt 213
>gb|BE248069.2|BE248069 NF001A11DT1F1081 Drought Medicago truncatula cDNA clone NF001A11DT
5', mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 586 gaggaggatgatgatgatgat 606
>gb|CA920510.1|CA920510 EST638228 MTUS Medicago truncatula cDNA clone MTUS-29B3, mRNA
sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1672 acaagaggaggatgatgatgatgat 1696
||||||||| |||||||||||||||
Sbjct: 342 acaagaggatgatgatgatgatgat 318
>gb|CB891929.1|CB891929 EST648898 KV3 Medicago truncatula cDNA clone KV3-52J9, mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 139 gcaaagaaaagaaaaagaagaaagt 163
>gb|AC119413.16| Medicago truncatula clone mth2-19p2, complete sequence
Length = 113431
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 54464 gaggaggatgatgatgatgat 54444
>gb|AC149079.7| Medicago truncatula clone mth2-75i8, complete sequence
Length = 121295
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 98962 gcaaagaaaagaaaaagaagaaagt 98986
>emb|CR954195.2| Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE
Length = 116834
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 97824 gaggaggatgatgatgatgat 97804
>gb|AC119408.22| Medicago truncatula clone mth2-5f18, complete sequence
Length = 120121
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1755 gcaaagaaaagaaaaaggagaaagt 1779
||||||||||||||||| |||||||
Sbjct: 12126 gcaaagaaaagaaaaagaagaaagt 12150
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 752,596
Number of Sequences: 392609
Number of extensions: 752596
Number of successful extensions: 72310
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72128
Number of HSP's gapped (non-prelim): 181
length of query: 2118
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2098
effective length of database: 433,880,813
effective search space: 910281945674
effective search space used: 910281945674
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)